RNA id: XM_036946615.1


Basic Information

Item Value
RNA id XM_036946615.1
length 2891
RNA type mRNA
GC content 0.47
exon number 12
gene id muc13b
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 26132993 ~ 26166321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACCTGAGCCATTAGTATTCACACAAGAAGGAAGACTACCTGGCGACGCACCTAGAACACGTCGTATTGATCGCCTGTCTCCGTTTTTTGACCTGAAGAAAGTTTTTCCTTTTATATTAATTTGATTTCATGAGCTGAGCAAGATGTTCGTCGTTAGACGTATTCTCGTCTTGTGCCTTGCAGTGGCCGTTTTCGGACAGATAACAACTACTGCGACTCCCACGGCTACTGCGACTCCCACGTCTACTGCGGCTCCCACGTCTACTGCTGCGGCTCCCACGTCTACTGAGGCTCCCACGTCTACTGAGGCTCCCACGTCTACTGAGGCTCCCACGTCTACTGAGGCTCCCACGTCTACTGCGGCTCCCACGTCTACTGCTGCGGCTCCCACGTCTACTGAGGCTCCCACGTCTACTGCGGCTCCCCCGTCTACTGCGGCTCCCCCGTCTACTGCGGCTCCCCCGTCTACTGCGGCTCCTCCGTCTACTGCGGCTCCCCCGTCTACTGCGGCTCCTCCGTCTACTGCGGCTCCTCCGTCTACTGCGGCTCCTCCGTCTACTGCGGCTCCCCCATCTACTGcggcaccaacaccaacaccggAGGCCACTACAACACCATCAAAATCAGATCCCTGTGCACCAAACCCATGCAAAGGTGGCAGCAGCTGTCAGCCAGGCTATGACTCCCACttcacctgtctctgtctggctggcCAAAAATACTCTGAGGATAGAAAGCGATGTGAGGAAGCCAAGGTCTTCCCAGGATCTCTGACCCTGCCTAGTATGACCTTCATCGATGACATGACCAACCCACAATCAGAACGTTTCAATACATCAGCTGACAAGTTAATTACTATGATGAGGAATCTTTTCCAGAGTCACCTTGGCTACATTGATTCCACAGTGCTGAATTTCAGCAAAATGGCTAAGGGTCCGGCCCGTACCATCTGGTCACTCAAGTCAGGTGGTGTCAACGTGGCCATGGAGAACAATTTTAAACTCGACTCCGTCATCACAGAAGCCTTCATCAATGGAACGATACAGGATGCTATTGTAGACTGTGACAAAACGGGTGCCGTTTGTTTAAATGATCTACTTAAAAATGCAGCATACAAAGAAACCGATCTGTGTGATTCGTATCGGAAACCTTGTGACGACACGTCAACTACTTGTACTTCTGACAGTGGTAGACCTGAATGTACTTGTCAGGACAATTACGTGAAATCGGAATACTCTATCAGAACATGCAAAGCTTGTGAAAGTGGGAAGAAAGCAGAGGACGGTGTGTGTAATGATTGTTCATTTGGTTACTCTGGTTTAAACTGCAATGAATcatGGAAGTTGATTCTGGTGATTGTCGGGACTGTTCTTGGTGCGCTGCTACTCATCACACTAATCATGCTGCCAGTAGTTGCACGCAAGACGTCCAAGAAGAGCTCCTCCAAGAAGTCCTCGAAGAACGCTGAGGTTCCTACCTACACCAGCCCCTATACCGCCAAGGACTTCAGGGCATCGGCCTTAACCAATGGGGGGGTGACCAATGTCAGTTCAGGTTTTGCGGGCGTACCCAAGATCCCCCGGGCCATGCCCAACAACAACAGCTGGGACCGTGGCAGCAACCTGGAGATGACGGAGAGCGGTAGCAGACAGGCACTGGTGACCAGGGGAGACAAAGGAGGGATTGGCAGCTACCAGAACCCTGATGACACAAGTAGCTTCAACAACAGGAACCCCTACCAGAGCGGAGGTCAGGGCAACAACCCTTACCAGAGCGGAGGTCAGGGCAACAACCCCTACCAGAGCGGAGGTCAGAGCAACAACGCCTACCAGAGCGGAGGTCAGGGCAACAACCCCTACCAGAGCGGAGGTCAGGGCAACAACCCCTACCAGAGCGGAGGTCAGAGCAACAACGCCTACCAGAGCGGAGGTCAGGGCAACAACCCCTACCAGAGCGGAGGTCAGGGCAACAACCCCTACCAGAGCAGAGGCTAGGACAACCCTTACTTTACACACGACAATGGAAGAAGAAACTGAAGACCCACTGGAACAGTCAATTAAGGATACCATTTTCTTCAGAACGCAAATGCTTAGAAATCAGAAACCAATAACAATGGTTTTTAAATAGTCCTACTTGTGATTCTGCCCTATGTTCTACTCAACTTTTATGCACTGTGTATCAATCTTTTTTTTGTTGTACAATAAATGATAGTTGAGTTGCAGTGTCCATTCTGTCCAAGAGTGGGCGGTGTATCCAAGCTCCTGAAATGTATGTAGCCAAAAGGCTACTAATGTATTGTCGCTCAGTTTTCCTTATGTTTTTAAGTATTTGTTAATCCATTCTCATGTCCTGATTGTATTGTAGAACTGTAATGAATGTGTTTTTTTCTAATATCAATCCAATACTGTATTCATGTGTGATACATGAGGGCTTAGTCTGTGACTCATGCAAATCTTACGTTAATGCCAATGCAAAATGTTATAACGTGAAAGGCCCAAGTTTGGCGTGCTAAATCATCATTATATTATGATTGCATGGGTCTGTCATTTTAAATGTTTCTTGTTAATTTATTTGAATATGGACGAACCCAGTTCAAATGGTGTTAGGGGAATTTATTGGTGTGGTTCGCCATTGTCTATTTTGATCTCTTGTACATCTACACCGGGGTTTAGAAATAGCAAATAATGACATTTTATCCTTAATGTGCCATCTTAATACATATTGTATATGTGATATAAATATAGTCCaatataaataaacagaatgtgtGTCAAATTGTTCAATGAGACACACCGTTCAGTATGATGActtttacacaatacattttgtaAATGAGACTGGCCTCTCGTTGGAATAAAGAAGGAAGGAAAATAAATCCATTTTCAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1550849 lncRNA upstream 63945 26004438 ~ 26069048 (+) True G1356780
TU1550818 lncRNA upstream 177929 25954835 ~ 25955064 (+) True G1356755
TU1550817 lncRNA upstream 178845 25953892 ~ 25954148 (+) True G1356754
TU1550719 lncRNA upstream 345022 25787713 ~ 25787971 (+) True G1356665
TU1550414 lncRNA upstream 348797 25783846 ~ 25784196 (+) True G1356395
TU1550998 lncRNA downstream 37524 26203845 ~ 26281363 (+) True lrp2b
TU1551031 lncRNA downstream 70245 26236566 ~ 26243680 (+) True G1356917
TU1551390 lncRNA downstream 115920 26282241 ~ 26282589 (+) True G1357249
TU1551400 lncRNA downstream 138630 26304951 ~ 26314801 (+) False mpp3b
TU1551394 lncRNA downstream 139746 26306067 ~ 26314801 (+) False mpp3b
XM_021565415.2 mRNA upstream 25586 26076461 ~ 26107407 (+) False znf281b
XM_021565416.2 mRNA upstream 25586 26076461 ~ 26107407 (+) False znf281b
XM_021565417.2 mRNA upstream 25586 26076462 ~ 26107407 (+) False znf281b
XM_036946614.1 mRNA upstream 225987 25795973 ~ 25907006 (+) False svild
XM_021565420.2 mRNA downstream 20494 26186815 ~ 26281357 (+) False lrp2b
XM_036946618.1 mRNA downstream 116750 26283071 ~ 26314809 (+) False mpp3b
XM_036946616.1 mRNA downstream 116754 26283075 ~ 26314809 (+) False mpp3b
XM_036946617.1 mRNA downstream 116754 26283075 ~ 26314809 (+) False mpp3b
XM_036946619.1 mRNA downstream 116754 26283075 ~ 26314809 (+) False mpp3b
TU1550905 other upstream 43610 26076541 ~ 26089383 (+) True znf281b
TU1549230 other upstream 1349481 24764639 ~ 24783512 (+) True dcakd
TU1549200 other upstream 1449074 24681414 ~ 24683919 (+) False G1355273
TU1549194 other upstream 1451878 24670599 ~ 24681115 (+) True LOC110491698
TU1549199 other upstream 1452274 24670439 ~ 24680719 (+) False LOC110491698
TU1551395 other downstream 138630 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other downstream 140171 26306492 ~ 26314801 (+) False mpp3b
TU1551396 other downstream 145375 26311696 ~ 26314801 (+) False mpp3b
TU1551398 other downstream 145375 26311696 ~ 26314801 (+) True mpp3b
TU1552517 other downstream 1162990 27329311 ~ 27332275 (+) True G1358292

Expression Profile