RNA id: XR_002468890.2


Basic Information

Item Value
RNA id XR_002468890.2
length 2212
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110491761
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27332830 ~ 27359591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatgactcccattgttagggcggagagagAAGTATCTTGTCAGTATATAAAAAATCTTTGTTTATACCTTAATGTTTGAATAGCCCCCGGCCGCGCAGTGCAGTCTGGGGCTACGGGCGGTGTTATCAGGGATCCTCGGGACGTCCATACCTAATTGATGTTGACATTTCAAATGGTTAATGTAAGGCTAGGGACGACTCAAGCATTCTGCATAGAACTGACCGTGAGGCGGCTGTCGCAACAATCTACTTGAAATGATGGATGGACTGGAAACCCAGTGACAGCTGTCATTTTCTGGTGGGAAAAAGAAATGGCCCTGTAATTACCAGAAAAGTCCAACAGGAGTGCATCCCTCAGGCCATCCGGTGCATGGACATCCTGTGCCAGTGTGATCCAGTTGTGGAGACTCCAGTAAATCGAGCCTGTGGCCGGACAGGCGTGGCATGCAGAATGTCAGACTCACCCCACGAGAAGCAGTGCATGATCAACGCCACCCTCTGCAAGGGGATCTGCTGGGAGTGATGTACTCTCTCACTCTGGGTGTAATACATAATTTAAACGTCATAGATATAAATTCCGACTGTGCCCATGATAAAATGTAATGCGAGTTGTGAAACTATGGAGATGCATTCAGACCATCCGTTGTGATTTGAACTTATGATAACTACATTACTTTAGTTGGCTGCTTTAAGGAAAACTTGAATGTAATATAAACTATTCTAGTTTGTGAATGATCTTTATTCATTGTTCACTTCTTTTTCAACAATATCAGATAGTCAGGGATGACCGGGGCCTTCAGCAAGTAAGACACGGAGTAAGAAATCATTTGAACATCACAGAAACAGTATAAATTCCCACTGTGCCCATGATAAAGTTGACCACTActtgccctccaagacacctacaacacctgatgtcacaggaaggtaaAAAAGAtccaaggacaataaccacccgggCCATGACCTGTTCACCctgcttccatccagaaggcgaggtcagtacaggtgcatcggAGCTGGGACAGAGCGATAGGAGCTGGGACAGagcgatagaagctgtttttcaatctcaaggccatcagattgttcaACAGCCACCACTATCACAGAGGGGGTCGGCTGCCTACCttcagacttgatatcattggctttaataaatagaacactagtcactttaataatgctacTTTAAGcatgtggcagggtagcctagtggttagtgttggactagtaaccggaaggttgcaagttcaaatccccgagctgacagggtacaaatctgccgttctgcccctgaacaaggcagttaacccactgttcctaggccgtcattgaaagtaagaatttgttcttaactgacctgcctagataaaggttaaaaataaataaatgtttacatatctcgcattactcatctcatatgtatatactgtatctttcaGCATCTTAGCTGCtctcactgctcatccatattttATACTTACATATTCTCATCCCATTCTTTTACTAGATTGtttgtattaggttttgttgtggaattgttagatataacctgttagatactgctgtaCTGTCGGCTcaagaagcataagcatttctctacactcgcaataacatctgctaaccatgtgtatgtgaccaataacattttattttacattaCTTTCATTGGCTGCTTTGAGCAAAACTTGTAATGGAACTTGTTTTGTGAGCCGTGTGTGTATGAACTATGTGAAATATTTTTGCTGAAAACAGGTACTGGCAGGAGGAGCAATATGAGTCTGCCAGTTTGTCATGTTATGGAGGCTTTGGTGGTCCACACAATGAAGCAGGTGTCCCTTCCAGTGATGTGGAGCTTGACCTTGGACCTGATGCTAGTAAGGATGGTGTTCAGAGGCTGAAATATCCTCCTTGATATAGAAATACTTCAACTTCACTGCCTCAATGGTAAGGTCCCTTGCACCATTGGGACACTTTACCTATACCACTACTGTGGTGCCCACCAGACCATCCGGTGAGGATCCCAGACCCTGTGACCCATAGCCCTGACTCCTGCACATTCATCCCTGTGGCCATTTTTAATGCATTGATGTGCTCTTCGTTATCTGTGGCCCATTGTAGGCGACACCGCATCCAATGACTGTGAACACCTTGAAATGCATTCCTTGTAAGGAATGTGCTTTATAAATAAAGTATGATTTGATTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1552466 lncRNA upstream 80664 27251269 ~ 27252172 (+) True G1358245
TU1552443 lncRNA upstream 134590 27198031 ~ 27198246 (+) True G1358223
TU1552441 lncRNA upstream 138165 27194464 ~ 27194671 (+) True G1358221
TU1552437 lncRNA upstream 142118 27190482 ~ 27190718 (+) True G1358217
TU1552425 lncRNA upstream 163153 27169461 ~ 27169683 (+) True G1358205
TU1552570 lncRNA downstream 168354 27509618 ~ 27510435 (+) True G1358342
TU1552625 lncRNA downstream 198296 27539560 ~ 27539829 (+) True G1358397
TU1552626 lncRNA downstream 200435 27541699 ~ 27541936 (+) True G1358398
TU1552683 lncRNA downstream 259251 27600515 ~ 27601054 (+) True G1358437
TU1552653 lncRNA downstream 319465 27660729 ~ 27759730 (+) True G1358411
XR_002469086.2 mRNA upstream 233616 27098269 ~ 27099220 (+) True LOC110492891
XM_021567337.2 mRNA upstream 287321 27018092 ~ 27045515 (+) True LOC110492862
XM_036946630.1 mRNA upstream 334481 26994629 ~ 26998355 (+) False LOC110492861
XM_036946629.1 mRNA upstream 334481 26994657 ~ 26998355 (+) True LOC110492861
XM_036946621.1 mRNA upstream 755683 26495038 ~ 26577153 (+) True ngfrb
XM_021565466.2 mRNA downstream 19289 27360553 ~ 27382020 (+) False LOC110491760
XM_036946636.1 mRNA downstream 19289 27360553 ~ 27382020 (+) False LOC110491760
XM_021565468.2 mRNA downstream 19290 27360554 ~ 27382020 (+) False LOC110491760
XM_021565467.2 mRNA downstream 19291 27360555 ~ 27382020 (+) False LOC110491760
XM_021565471.2 mRNA downstream 22532 27363796 ~ 27382020 (+) True LOC110491760
TU1552517 other upstream 561 27329311 ~ 27332275 (+) True G1358292
TU1551395 other upstream 1018035 26304951 ~ 26314801 (+) False mpp3b
TU1552634 other downstream 219883 27561147 ~ 27577092 (+) True LOC110491768
TU1552849 other downstream 561786 27903050 ~ 27945841 (+) False LOC110491776
TU1552979 other downstream 705418 28046682 ~ 28047390 (+) True G1358698
TU1555703 other downstream 2461390 29802654 ~ 29804368 (+) True G1361207
TU1556224 other downstream 2602177 29943441 ~ 29943756 (+) True G1361671

Expression Profile