RNA id: XM_021565467.2


Basic Information

Item Value
RNA id XM_021565467.2
length 2713
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110491760
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27360553 ~ 27382020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTACGCCTTCTCCAGTCTGTGGTACCAGTAGGCATAATACAGGAAGAGAGTCGTGGAGGAAAAGAAACGGGACGCCCTTTTTTTTATACTTGCATAGTTAGTAGATAACGGAATCCAAAAAGTTTTTCGGGGCCAACGCAGACAATAGCCCTGTTACAGAGATAATATATCCAGCCATTCCATGGACGTTTGACGAACAAGGTTCAATAGAATAAACCATCCACTACAAGCTGATGCTGATTATATTAATATTTTCTCACATCAAGAGGAAAAAAGCTAATTTCAGAATTTACCATGGATGATTTGGACGCCCTCCTCGCTGACCTAGAGAGCACCAGCTCTCCCCTGGCCAGGTGCCCAGTCCTGCTTACCTCTGATCCCCCGGCGACATCTGACCCCGCGCCTGCCAGCCCTCAGGAAAACGCCCAGACCAGGCCACCGCCTCCAGCTTACACACCCCAGCAGACGGTGTCTGCTGCAATGAAGTCCAATGGTTCTCAGAACCCAAACCCAGACAAACAACTGTACAGCACAGTGAATAAGCCTCGCTCCCCCCGCACGGCCGACCCTCCCCCTCcggccttctcctcctcctctgtgttaGGAGGGGGTCTCAGCGAACTGGACCACCTTCTGCAGGAGCTCAACGCCACCCAGTTCAACATCACAGATGAGATTCTGGCCCAGTTTCCCACCACTAAAAAGGATGAGAGGGACAAGATAAAAGAGTTCCAGGGGTCCAAGGACAAGGTCACAACACCCTACCCCAGTTCGGTGAAGCCGTCAGCCACCTCAGCTACACTTGAGCTGGACAAACTCATGGCCTCTCTGTCTGACTTCAGAGTCCAGAGCACAAACGCTACAGAGTTCAAAACTGCGGAGCCGCAGAGCCATGCGGTCTATTGTGACGTACGTCGCCCGCGACTTGATAACAGCCAGTTAAATGAGCCAGCTCCAGCTGTCACACCAGTGATCACAGTACCACAGCATCCGGTCCCGCCCCCACAAGCCTCTTCCGGCGGCTCATTGGACAGCATGCTGGGGCTCCTCCAATCGGATTTAACCAGGCAGGGAGTCCCCACATCCTCCAAGGGTAGCTGCTCGGCCTGTCAGAAACCGGTTGTAGGACAGGTGGTGACTGCTCTGGGGCGGGTATGGCACCCGGAACACTTTGTGTGCTCGGAGTGTGAGACAGAACTGGGCAGCCGGAACTTCTTCGAAAAGGATGGTCAGCCGTACTGCGAGTCGGACTACTTTACCCTCTACTCTCCCCACTGCGCACACTGCAACAAGCCCATACTCAATAAAATGGTCACCGCCCTGGACAAAAATTGGCACCCGGAGTGTTTCTGTTGCGTCAAGTGCAGCCGGGCATTCGGAGAGGAAGGTTTCCATGACCGCGAGGGTCAGCAGTACTGCCAGCAGTGCTTCTTGTCCCTCTTCGCCTCCCGTTGCCAAGGATGCACCCAGCCAATCCTGGAGAACTACATCTCTGCCCTCAACTCCCTGTGGCACCCGCAGTGCTTTGTGTgcaggGAGTGCTACTGCCCCTTCGTCAACGGCAGCTTCTTCGAGCACGAGGGCCAGCCGCTGTGCGAGGCCCACTACCACCAGTCGCGCGGCAGCATGTGCCAGGCGTGCCAACAGCCCATCCTGGGCCGCTGCGTCACCGCCATGGGTGCCAAATTCCACCCGCACCACCTGGTGTGCCACTTCTGCCTCAAGCCCCTCAGCAAGGGTTGTTTCAAAGAGCAGGAGAACAAGCCCTACTGCCATCCCTGCTTCATCAAACTCTTCGGCTGAGCACCGAGAAGGACGCTGCCCATCCTATGTTTTCTTCTTCCATAACTCCCATACCAGGTGTatgtcgtgttcattagggcacataacaatttaaaatgttttgcaacagaaaacgtaaatgagcatttcttattggacaagtccaggtccGTCCCTGTTTCAAtgcgtttggtgcctaatgaattcGACCCAGCTCTTTTCTAGTTGCGAAGTTGAACAAATATCTGTCAGCCATTTTGTTTTGTcgcagagaatgagagagagatcagagctgGACTCTTTCTGGGTTATAAGACAACATTGGCgactagaaagagaaagggatagagagaaaagTCTAAGACAATCCAAATCTCTATTAGACTGGTACCATGcaggcaaaactggttgaaattaTGTCATAATGAACATTTCAACTAGTTTTGTCCGCAGGGTACACAGAGGCCAACAAAAATATTTGGGTGAGAAGGGAGCATAGATCTCCAAGACACATAGATGACCAATGCAGAAGCCATAGCTAAACTTTTGAGGAAGTTTTCCAAAGAGAAAATAATAGAAAGTTGTTATCACATGGTGTATGTAAATCCATGACTTATCAAATGGAATATTGACCACTGAATTATttgaaattgacatttttgaTGGTATCGAATGGAACCTTTTTATGAACATTTTGATGAAGGATCTTTAATAAAAACCCATTTAATATATTTGCTTTACATTGCAAAGTATAATTATCACTGCTATTGCATTTCTATACTGATATATTGTCTATTTTAAATTTGAGGCTACCATGTATCGCAATTGTAGTGCCAAAGATTTTACAATGTTTTTTTCCACCATTGTGCTATGCAATTATGTATAAAGAATACCAAAGAGTAAAATAAACACAATTTTGTTCTGCCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1552515 lncRNA upstream 19353 27332970 ~ 27341202 (+) True LOC110491761
TU1552466 lncRNA upstream 108383 27251269 ~ 27252172 (+) True G1358245
TU1552443 lncRNA upstream 162309 27198031 ~ 27198246 (+) True G1358223
TU1552441 lncRNA upstream 165884 27194464 ~ 27194671 (+) True G1358221
TU1552437 lncRNA upstream 169837 27190482 ~ 27190718 (+) True G1358217
TU1552570 lncRNA downstream 127598 27509618 ~ 27510435 (+) True G1358342
TU1552625 lncRNA downstream 157540 27539560 ~ 27539829 (+) True G1358397
TU1552626 lncRNA downstream 159679 27541699 ~ 27541936 (+) True G1358398
TU1552683 lncRNA downstream 218495 27600515 ~ 27601054 (+) True G1358437
TU1552653 lncRNA downstream 278709 27660729 ~ 27759730 (+) True G1358411
XM_021565473.2 mRNA upstream 964 27332848 ~ 27359591 (+) False LOC110491761
XM_021565475.2 mRNA downstream 259 27382279 ~ 27398868 (+) True patl2
XM_036946644.1 mRNA downstream 49131 27431151 ~ 27500887 (+) False cmn
XM_036946645.1 mRNA downstream 49131 27431151 ~ 27500887 (+) False cmn
XM_036946647.1 mRNA downstream 49131 27431151 ~ 27500887 (+) False cmn
XM_036946648.1 mRNA downstream 49131 27431151 ~ 27500887 (+) False cmn
TU1552517 other upstream 28280 27329311 ~ 27332275 (+) True G1358292
TU1551395 other upstream 1045754 26304951 ~ 26314801 (+) False mpp3b
TU1552634 other downstream 179127 27561147 ~ 27577092 (+) True LOC110491768
TU1552849 other downstream 521030 27903050 ~ 27945841 (+) False LOC110491776
TU1552979 other downstream 664662 28046682 ~ 28047390 (+) True G1358698
TU1555703 other downstream 2420634 29802654 ~ 29804368 (+) True G1361207
TU1556224 other downstream 2561421 29943441 ~ 29943756 (+) True G1361671

Expression Profile