RNA id: XM_021565475.2


Basic Information

Item Value
RNA id XM_021565475.2
length 3315
RNA type mRNA
GC content 0.47
exon number 19
gene id patl2
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27382279 ~ 27398868 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCATACAAAGCTGTCTAAAAAGATAAAGGTAGCAGAAAGGTAAACCGACGAATAGAAGTGTAATATTTTCAGAAACTATTCAAATGAGTGACTCAGAACAACCAGAGACTGAAACCGCAGTCTCTCAACCTCAGTGGCCAGAGAACGGAGGCCAATGGAGCGATGAAGAAGGGGGGGCAGGCATGGACGAGTGTGGATTGGCAGAGATggcagaggaggatgaggaaataGATATCTACAACAATGAGACGTTTGGAATGgATATGGATACAGAAGTCGGGGACACGGAAGGGGATCCCACTAACCCTCTGTTCCAATTTGGAGAGAAGCCACCTGCCCCACCTGCCTTGCCATCCCTCTCCCCTAgctccccccccttctctcccaggGCCCGGCCACAACTCCGGGTCCAGGGCCCTCCGGTCCGacgaggaaggggacagaggggagGTCAGGCCATGGCGCAGATGTTTGAAGACCCAGCTGTGGTGAGGACTGTGGAGGGGCGACCAAGTTTGCAGAGCTTAGACAGCGCTATAGTGGACGTTGGGAGCGTCTCCTACTGGGATGATCTAGATCCAGATGCTTGGATGTTATCATCTTATGAGAGAACCAGACACGCCTCTGGATCAGTATTGCAGGACCCGGCCATTGTGTGTGTGATGGACAGTCATGCCCCTGGCAGAGGACCGAACTACCTGGACTCTCACTACCCGTTCTCCAACTcaagtgggaggagagggggccTAAGAGGGTCATACTCAAGTAGACCATTTGGGCAAAGATGCCCATCTCAGATTAATACCATGTTGCCCAGCTCTCCCATCGTCTCCCGGCGACCTTTCACCACACAACAGCCATATAACCAGGTGGGGGGCTTCCTCTCGCCCTCGCCACGTCCCTGCCCCTCCACCCCTCAACCTTTAACTCCGAAAATGATGCAGCTTCGCTTTGGTGCAAACTCCCCAAGACCCTCTCCCTTCTACAGCCCCTCGTCAAATCGTGTGCAGCGATTCAGGTTCCCTGATCCAGTGACACAGCTTCACCCCCAACACAGACGATTGTTGAGTCAAAGGCAACAGAGATCCCAAAGAAAACCAGACAGCTGGGACCCCTACTGTAACCTCATGTCGGCTAAAGAGAAAGAGTGGATCATTAGACTACAGATGATTCAGCTTCAGAGCGAGAATCCCCACCTGGACGACTACTACTACCAGGAGTACTATCGGCGAATGGAGGCCAAGCTGGCAGAGGAGGAGTTGGGCATGCGGGGCAAGAGGGAGCCACCCAAACTCACCACCCCCTATGTCACCAAGATGGACTCTTACACCCCAGTGGTGCACATCGAGGGTTCCCTAGGCCAGGTCGCCGTGTCGACATGTTTCTCTCCTCGACGAGCGATCAATGCAGTTGCAGCCCACTGTCCACATGAGgaactaaaagacatcaggcaACAGCGATTGGATGTCCTAAAGAAAATAGAAAAGTTGTTCATGGTGCTGCTGGAGGTAGAAGAGGGGCAGAGGATGAAGGCACAGGTGCTGGGGGAGGGTGAGGAGAAGGGGCTGATGGAGAAAACTGAGATAAAAGTGGAGTACATCTACTCCCAGCTACAGCATCCTGACCTAGAGGCAGGGGAAGAATTTCTGCCATGTCTCCTGGTGTCCAAAGGAAAGCAGCTACTGGCTCGACTCATCCCCTTCCTTTCCCATGACGCCGCGTTGAAAGTCTTAAGCATGGTGACATCTCACCTGCCTGTACTCATGAGCAGAGACGCAGATGAgTCTCTTCCGGTTTTGTACCCGTCTCTTCGAATTGTGATCGGAGGCATGACCTTCAGTCAGCTTATTGGGGTCCTTAAAGACTTTACGGCATCACTTCCCGACTCCAGCGATGGCAGCGTGTGCCTCTCACTTGTCTGCCAAAGCAAGTTTGGGCTCTCCTTACTCTACGCTCTGCTGTCCCAAGGAGAGAGGCTACTGTCCTCTGATGTTCCTCTGGAGCCCAGCATTGGTGACTTTGAAACATGGACAGACACAGTCTTCTTGGTGGCTTCGCAGCTATCCCAGAGTGCTCTGGTGGAGCCCCTTCTCCTACCCTCAAACCTTCTCACACTCTTCTGCCGCTACCTGGACAAGCGTACTATCCACCAGCTGAAGAGCAATATGGAATCTGCGACTGGATACCTGGCTCTTCCGTCGTAGTAGGCAAGGACATCTGAAGCAGAGACTGTGTTTTGGCTAATGTACAGAATGTAATGAGCACCAAAATGAAAACGAGTGGGCATGCATACCCTGAGGTATTCCCTCTGCCTAGACGTACCACAgtatggctgcatttacacaaacagcccaattctgattttttttttttttttcaataattgcTCTTTTGAGTAATCAGATCAGCGCTGAAAAATAtttgatgtgaaaagatctgtgATTTTgtcaaagaccaattagtggaaaaaatatcagatttGGCCTACCTGAGTAAACGCAGCCTATGCTACCCATGCATTCTCCTTGTATGCAAAATGTGTTGTCTTAGAACACATGAATGCCATTCTTCTTATTCCTTCCTTTTTTTCTTCCCTCATTCCCTCACTTTTTTTGCACCTTTCCGTTGTCTCGATCTGTTTCCTTTATCTGCTCCTTTTTATTTCCTACTTTCCTCCTCTTAGTCTCCAGTCCAGCAACTCAGATTTGCTCTCTAGTCACAAATTCTCTTCATTTTTAACCTCTATAATCCAGTCCATAGTTTTAACTGCTACAGTACCATAGTACCACAATGTGGTGTAATGGACATAAGTTAGTCCTATGATGTAACACAGCCAGTAGATGGGGCTGAGCGATTGATACGTCAGCTCTCACTCTCCAGCTAACCTGCCTAATATTCAAGTCAAAATGAAAATATCAATCGATGTGTAATATCATTTCGGGAAGAGTAAGCTGTCATTTATCATTTTCATGATTTAAACGGTCTTCTCAAAAGAAATTGGTGTCTGAATCATGGAGGATTGTGCAGTTGCACTTTGTTAGTACGTGTGTAGGTTACATTTTGTCATAGAAAAATGTGTTTTCGTAAAATCAAATTGacttaaaaaaatatttggaaGTTTGGTTTCTTTCTAAAAGATAAATGTATATGGTTTTCCAAAATGTACCCTCTATGCATGTGCCATATGCTTTCTTCAATATTTATTTGAATATTTAAGTTGTAACTTGATCAAATTGAATCAGTTTAGTTGGAAACAGAATAATCACTCTTGTATAGCACTTGCAACATAAGAAATAAAATTCTTTAAAAATAA

Function

GO: NA

KEGG:

id description
K24823 PATL2; protein PAT1 homolog 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1552515 lncRNA upstream 41077 27332970 ~ 27341202 (+) True LOC110491761
TU1552466 lncRNA upstream 130107 27251269 ~ 27252172 (+) True G1358245
TU1552443 lncRNA upstream 184033 27198031 ~ 27198246 (+) True G1358223
TU1552441 lncRNA upstream 187608 27194464 ~ 27194671 (+) True G1358221
TU1552437 lncRNA upstream 191561 27190482 ~ 27190718 (+) True G1358217
TU1552570 lncRNA downstream 110750 27509618 ~ 27510435 (+) True G1358342
TU1552625 lncRNA downstream 140692 27539560 ~ 27539829 (+) True G1358397
TU1552626 lncRNA downstream 142831 27541699 ~ 27541936 (+) True G1358398
TU1552683 lncRNA downstream 201647 27600515 ~ 27601054 (+) True G1358437
TU1552653 lncRNA downstream 261861 27660729 ~ 27759730 (+) True G1358411
XM_021565466.2 mRNA upstream 259 27360553 ~ 27382020 (+) False LOC110491760
XM_036946636.1 mRNA upstream 259 27360553 ~ 27382020 (+) False LOC110491760
XM_021565468.2 mRNA upstream 259 27360554 ~ 27382020 (+) False LOC110491760
XM_021565467.2 mRNA upstream 259 27360555 ~ 27382020 (+) False LOC110491760
XM_021565471.2 mRNA upstream 259 27363796 ~ 27382020 (+) True LOC110491760
XM_036946644.1 mRNA downstream 32283 27431151 ~ 27500887 (+) False cmn
XM_036946645.1 mRNA downstream 32283 27431151 ~ 27500887 (+) False cmn
XM_036946647.1 mRNA downstream 32283 27431151 ~ 27500887 (+) False cmn
XM_036946648.1 mRNA downstream 32283 27431151 ~ 27500887 (+) False cmn
XM_036946652.1 mRNA downstream 32283 27431151 ~ 27500887 (+) False cmn
TU1552517 other upstream 50004 27329311 ~ 27332275 (+) True G1358292
TU1551395 other upstream 1067478 26304951 ~ 26314801 (+) False mpp3b
TU1552634 other downstream 162279 27561147 ~ 27577092 (+) True LOC110491768
TU1552849 other downstream 504182 27903050 ~ 27945841 (+) False LOC110491776
TU1552979 other downstream 647814 28046682 ~ 28047390 (+) True G1358698
TU1555703 other downstream 2403786 29802654 ~ 29804368 (+) True G1361207
TU1556224 other downstream 2544573 29943441 ~ 29943756 (+) True G1361671

Expression Profile