RNA id: XM_021567338.2



Basic Information


Item Value
RNA id XM_021567338.2
length 1078
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110492863
representative False

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27501331 ~ 27504634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGTGATTGCTGATTGGTCACACAGAAAGCATGCCACTCTGTGAGCTCAACAGGTCGCTTGCTAAGAACTTCAGTACCTGTTCCAAGGATGAGACTCGTGCCGACATTATCCTGCCAACTATCCTGCTTGACTTGACAATGTATGTGCCTAAAGTTCTTACTGGAGACTCTTTCAGGATATATGTATATTGCACGATCAACTAATGTCCTGTAAACTCAGGGGGACATTGGCTGGAGAAAGCCACCATGGCTTGCTTACATGGACCACGACTACTGAATTTGGAGAAAACCCCTCCTCATCTTCAGTTCAATGACTTGATCCTGACAGGCTACCGGCCAATTTCAACCTTTCAGGGGTGCATCAGAAGCTTGTTCTACTTGCACAATGAATTTGGTAACATTTATACCCATGgaATCCCATTCTTCTGTTTCCTTGTGCTGCTGCCACTTAACATCCCCTGGTCCGAGGTGGAGCAAACGTGGATGTGTGTGTTCCACTACCTTGCCTGCCTGTCCCCCACCGTGGGCTCAGTGCTTTACCACACCTTCATGAACCATGAGGGCGGGGAGCCCATCTACGACACACTCCTTTCCCTTGACATGGTCGGAGTCTGCCTGGTCAACACCTTGGGATGCCTGCCCATCATCTATATCACCCTGATGTGCTACCCTGGCACTTGCATCCTGGCCCTCCTGTCCTACAGCCTAATCTCAGCCTGGGGCATCCTCTGTGCCACCACAGCGCGTAGCAACTATGGGCGCCTTCGCGCTTTCATCTGGCAGGCCCTCTTCCGTgtgctcctcttcctgttccgtTGGCTGGGCGACGGTGTAGGCAGCCCAGCTTCGCTGCGCCTCTTCTTCACCATGGACATGCTGGCTATCATGGGTGGCCTGGTGAACCTTAGCCGGGTGCCCGAGCGTTTTAGCCCAGGCCTCTTCGACTACTGGTGCAACAGCCACCAGATAATGCATGTGCTGGTGATCTGCTCCATTATCTACATGCACTGGGGGATGCTGGAGGATTTAGCCTGGATTAAGACGTTCCAGTGTCCGGTGTTGGAGTGAGGGACAGAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1552515 lncRNA upstream 160129 27332970 ~ 27341202 (+) True LOC110491761
TU1552466 lncRNA upstream 249159 27251269 ~ 27252172 (+) True G1358245
TU1552443 lncRNA upstream 303085 27198031 ~ 27198246 (+) True G1358223
TU1552441 lncRNA upstream 306660 27194464 ~ 27194671 (+) True G1358221
TU1552437 lncRNA upstream 310613 27190482 ~ 27190718 (+) True G1358217
TU1552570 lncRNA downstream 4984 27509618 ~ 27510435 (+) True G1358342
TU1552625 lncRNA downstream 34926 27539560 ~ 27539829 (+) True G1358397
TU1552626 lncRNA downstream 37065 27541699 ~ 27541936 (+) True G1358398
TU1552683 lncRNA downstream 95881 27600515 ~ 27601054 (+) True G1358437
TU1552653 lncRNA downstream 156095 27660729 ~ 27759730 (+) True G1358411
XM_036946644.1 mRNA upstream 444 27431151 ~ 27500887 (+) False cmn
XM_036946645.1 mRNA upstream 444 27431151 ~ 27500887 (+) False cmn
XM_036946647.1 mRNA upstream 444 27431151 ~ 27500887 (+) False cmn
XM_036946648.1 mRNA upstream 444 27431151 ~ 27500887 (+) False cmn
XM_036946652.1 mRNA upstream 444 27431151 ~ 27500887 (+) False cmn
XM_021565505.2 mRNA downstream 56507 27561141 ~ 27595350 (+) False LOC110491768
XM_021565506.2 mRNA downstream 69896 27574530 ~ 27595350 (+) False LOC110491768
XM_036946678.1 mRNA downstream 90794 27595428 ~ 27646077 (+) True sult1st6
XM_021565511.2 mRNA downstream 198749 27703383 ~ 27727796 (+) True LOC110491774
XM_036946681.1 mRNA downstream 271648 27776282 ~ 27823581 (+) False LOC110491775
TU1552517 other upstream 169056 27329311 ~ 27332275 (+) True G1358292
TU1551395 other upstream 1186530 26304951 ~ 26314801 (+) False mpp3b
TU1552634 other downstream 56513 27561147 ~ 27577092 (+) True LOC110491768
TU1552849 other downstream 398416 27903050 ~ 27945841 (+) False LOC110491776
TU1552979 other downstream 542048 28046682 ~ 28047390 (+) True G1358698
TU1555703 other downstream 2298020 29802654 ~ 29804368 (+) True G1361207
TU1556224 other downstream 2438807 29943441 ~ 29943756 (+) True G1361671

Expression Profile