RNA id: XM_021565516.2


Basic Information

Item Value
RNA id XM_021565516.2
length 3317
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110491776
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27902972 ~ 27986259 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaccaataggtgcccttctttgtgaggcagtggaaaacctccctggtctttgtggttgaatctgtgttcgaCTGAGGGACTTGTATGTGTGCAGAATATTTGAAAGCACTGCGTAAAACAGGTAAAACCCATAGAAGCCTTAAGACACGGATCAGTGAGCACCGCAGCAATATACGGACAGCCCTATGACTGTGCGAAAGGGAAACAAGCGCCTGACCATCTCCATCCAGGAACACATGGCCATTGACGTCTGTCCCGGGCCAATCCGCCCCATACGACAGATCTCTGCCTACTTTCCCCGCCTCTCGCCCACTTCCTCCGTCTCTGAGTTGAATCCAGCCAATCCATCTGGATTTCCTTCCACGCTCAGCCCCAGCAGCGGAGGAGGGGcagtagggggaggaggagggggcggcGGTGGCCTGTTGTCCCCACTGTTGGCGGGGGCAACGGGAGACGGTGGAGGGGGCACGTTGTCGGCCATGGGTAGCATGGACACATCAATCGAGATTGACAGCTGTGACAGCGATGACAGCACCGCCTTGGGGACATTGGAGTTTGACCTGCTGTATGAGCGAGCCACCAGCTCCTTACACTGCACCGTAATCAAAGCCAAGGGTCTGAAGCCGATGGATTTCAATGGCCTGGCCGATCCTTACGTCAAGCTGCACCTGCTCCCAGGAGCCTGCAAGGCGAACAAACTGAAGACCAAGATCGTGCACAACACCCTGAACCCTGTGTGGAATGAAAGACTCACCTACCTGGGCATCACAGAGGAGGACATGTACAGAAAGACACTCAGggtgtctgtgtgtgacgAGGACAAGCTGACGCATAACGAGTTCATCGGAGAGTCGCGGGTGGCCCTGCGCCGCGTGAAGCCTGACCAAACCAAACGCTTCAACATTTGTCTGGAACACCCACCGCcccttCCCTCCCCTTCTGCAATGAGTGCGGCACTGAGAGGCATTTCCTGCTACCTGAGAGAGTGGGAGAGTGAACAGCAGAGGAGTCTGGAGGAGAGGGGTCGTCTGCTGCTCTGCCTGCAGTTCCTCCCCACGTCCGGTGTGGTCGATAAGGccaaaggggaggagagggcccACGGAGGGCTCTGTGTGGGTGTGCGACGCTGCGCCCACCTAGCCGCCATGGACGTCAATGGATTCTCGGACCCCTATGTCAAAACGTACCTCAAGCCAGACCTGCAGAAGAAATCCAAGCATAAAACAGCCGTCATAAAAAAGACTCTTAACCCAGAGTttaatgagGAGTTCTTCTATGAGATCTCCTTCACGGAGCTGTCCACCAAAACCCTGGAGGTCACCGTCTGGGACTACGACCTAGGGAAATCCAACGATTTTATTGGAGGCGTGTCCTTAGGCTGTCACTCACAAGGAGAAACTCTCCAGCATTGGATAGACTGTCTGAAGAACAAGGGCACAAAGGTGGAGCGATGGCACACGTTGACCAATGAGCTGCCTGGATCCACATTCCATGAATGAAAATGGGCCAATAATAATATCTCACTACTGTACTGTTTTTGGCCAAAATGTTTGGCTAAATTGGGATTATGGATGAAAAGGTGTTCATCAACGCATGTTATGAAGATGTATTCTGCATGACTTGAACATTTGAGTTCAGAAGAAATGGTAGGGGTGTGGGGttagttgagccaaaggggttaGTTAAGGCATCCTTGTTTCTaagaaaccatacacaaaatgtataatttgGCCAAATACTTAGGAAgcggtcatcatttcatggagtctgtgaagaaaggtttcctaaactcggtcctcgggactcCAAGGGGTGCCCTTTTTTTTattccctagcactacacagctgattcaaataatcaactaatcatcaagctttgatcattttaATTAGCCGTGTAGTGTTCAGGCAAAAAGAAAAACATGCACAAAAGTGGGACGCAAGTCAGGTCCCCAAAAatgattttcaccaagtcaaatgaatatgttagaggtttcatgatgcttgtatttgaaccaaagtagatcattttaagattgttctatacatcagttggggtctttATGAgtttcaatatgaggtcctaaacctagcatgaggtcctaaaccttcatccttgtagctgtgtgggctaatatagtcaaaatgtttacattttgggtaagtgttttcttcccaggcataatgcaaggcattatcgctgggacatgaggtaataacagggcaTGGCCTATGTTAAAAATGATTCAAATGATTCAAAGACAAAAAGTGcttgtgattgtgttgaattgtgtttggaaaataaagatagacatggttttaaaaaggtagtggttatatttcattcagtacagaaatgtgCAGCTAAGTTTGTCCcgcagctcaacttaccccaaacCCAATGTAAGTTGTACCAAGAGATCACTTTTTTTGGGACAAACTAGGCTTTCAAtatttacatgaattctgattattaccagggatacacaacatcctgaaatatatatatatatatagatatctttgttagaaagaatactgtactgtatgtccctTGATGGAATGaggctgaatgtaaaaaatggcACAACTTACACCACTCTCCCCTAAGTAGAGAATATCTCCTTATACTTAGGCTATACATAATTCTCTTTCACGTTACAGAGGGCCATATCCATTCTGTATATTTAATTTTGCGCTCAGTGTTCAGAAACATAGCACCCTAGGCTACTGAATAGACCTCCTGTGAAAAAGGCTAATTAAAATCATGTAAATCACATCTAAGGAAGTGAAAAAATGAAATTATTTTGTAAATTTACTCCTCATTATTCATACTGTTTCGTTTGTTTATTCTTCTAAAATTAGATTTCGTTCTTTCATTAACTTCTGATTCGTCCTGACCTGGAAAATATCCCCCCGTATTTCCCTTCTCACTGCCTGAATACCTCTCCAAAAGCAATAACGTCTTGCCTAATGCTTCCAAAGAATTCTAAATGGGTCTTATTAGTCACAAACATTTTCTATCGACTGATGTAACTGCCATTAAATGATCTGCAAATTATAATTCATTTGATTAAATAGTGCAAAGTAATAAGACAGTTGGTTCTTTGCATGTTTgatgtaataaaaaaaatgtgactGACTTACCTCTCCTCCAGTTTTGGTGGAACAGACACAAATGCTTGAAGAGCATCATTTCAGGATGTAGGCCTACATCTCTGTGCTGTTCCATATTTTCTCGAGTCACGTTGGGATGACTACCCTTGTAAAATAAATATGTACTTTGTTCAAATAAATCATTGTGGAAAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1552724 lncRNA upstream 113210 27819977 ~ 27823580 (+) True LOC110491775
TU1552653 lncRNA upstream 177060 27660729 ~ 27759730 (+) True G1358411
TU1552657 lncRNA upstream 248885 27668849 ~ 27687905 (+) True G1358412
TU1552683 lncRNA upstream 335736 27600515 ~ 27601054 (+) True G1358437
TU1552626 lncRNA upstream 394854 27541699 ~ 27541936 (+) True G1358398
TU1552925 lncRNA downstream 16050 28002309 ~ 28004524 (+) True G1358656
TU1552942 lncRNA downstream 34125 28020384 ~ 28034898 (+) True G1358671
TU1553007 lncRNA downstream 116906 28103165 ~ 28127485 (+) True G1358725
TU1553040 lncRNA downstream 191036 28177295 ~ 28181077 (+) True G1358757
TU1553141 lncRNA downstream 312010 28298269 ~ 28298893 (+) True G1358839
XM_036946681.1 mRNA upstream 113209 27776282 ~ 27823581 (+) False LOC110491775
XM_021565524.2 mRNA downstream 62807 28049066 ~ 28081371 (+) False pagr1
XM_021565526.2 mRNA downstream 62807 28049066 ~ 28081371 (+) False pagr1
XM_036946688.1 mRNA downstream 62807 28049066 ~ 28081371 (+) False pagr1
XM_021565521.2 mRNA downstream 63033 28049292 ~ 28081371 (+) False pagr1
XM_021565522.2 mRNA downstream 63235 28049494 ~ 28081371 (+) False pagr1
TU1552634 other upstream 359698 27561147 ~ 27577092 (+) True LOC110491768
TU1552517 other upstream 604515 27329311 ~ 27332275 (+) True G1358292
TU1551392 other upstream 1621989 26306492 ~ 26314801 (+) False mpp3b
TU1552979 other downstream 60423 28046682 ~ 28047390 (+) True G1358698
TU1555703 other downstream 1816395 29802654 ~ 29804368 (+) True G1361207
TU1556224 other downstream 1957182 29943441 ~ 29943756 (+) True G1361671
TU1557278 other downstream 2717388 30703647 ~ 30704108 (+) True LOC110492869
TU1557509 other downstream 2968350 30954609 ~ 30955975 (+) True G1362902

Expression Profile