RNA id: XM_021565534.2


Basic Information

Item Value
RNA id XM_021565534.2
length 4886
RNA type mRNA
GC content 0.55
exon number 21
gene id taok2b
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28177715 ~ 28237354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTCGGCTCCCGCCCCACTCCGCCATCATGAAGTTGTGAACCAAAAAACGAATGAGACAGAAAGGGTAAAAAAAGGAAAACAATTCATGAATAACATTTATGTAATGATAAAATATGGTCGAGAGTGGAGCAAATACCGGGGTCAGCTTTAAATTGATTAACTGTTTCCCAGTCGTAATCTTCTGATTGCTGGTGAGAAGACCAGGTCGTTAGCATTTTGATTGACTGCCATAGCTAATGCTAGCTAAATCGTTCGCGAAGAATGGAatatcaatgaaaacaatgtggcTCGCTCGTGTTGAATAGAGCAGAAGAGGTAACGTTAACGTTAGAAGAGCGACCAATATTTCCCATCCCGGGCCAGCTAGCTAGCTCTCCAGCTAGCTACGGTGGACCCCAAAAGCCACGATTTGTCTTTGGTGGGGTGCAGGCATGCACCCAAATTAGCAACTGGGATGCCATTGCCAACACCAACATGAACATTTTCGATTGAAAACAATTGAAGGATTTTGGCGTTGGGCAACAGAGCTAGGAAGGGGCAACCCCATCCTTCATAatggcgcTGGCGATGCCGTCCAGTGTGCGGGCCGGGAGCCTGAAGGACCCAGAGGTAGCTGAGCTCTTCTACAGAGATGACCCTGAGAAGCTGTTCACCGACTTGCGGGAGATCGGCCACGGCAGCTTCGGAGCGGTCTACTTTGCACATGACATCCGCACCAATGAAGTGGTGGCCATTAAGAAAATGTCCTACGGTGGCAAGCAGTCCAATGAGAAATGGCAGGATATCATCAAAGAAGTGAAGTTTCTCCAGAAACTGCACCACCCCAACACTGTGGAGTACAGAGGTTGCTACCTGAGAGAGCACACAGCATGGCTGGTAATGGAGTATTGTTTGGGTTCAGCCTCTGACCTACTGGAAGTCCACAAGAAGCCCCTCCAGGAACAGGAGATAGCAGCCATCACCCACGGTGCATTGCAGGGCCTGGTGTATCTTCATTCTCACAACATGATTCACAGGGATGTGAAGGCTGGTAACATCTTGCTGACCGAGCCTGGCCAGGTGAAACTGGGTGATTTTGGCTCAGCCTCCATCATTGCCCCGGCCAACTCGTTCGTGGGCACGCCCTACTGGATGGCTCCTGAGGTGATCCTGGCCATGGACGAGGGCCAGTACGACGGCAAAGTGGATGTGTGGTCACTGGGCATTACCGCCATAGAGCTGGCGGAGAGGAAGCCGCCTCTGTTCAATATGAATGCTATGAGTGCCTTATACCACATTGCCCAGAACGAGAGTCCCGTTCTGCAGTCCAATCACTGGTCTGATTATTTCCATAACTTTGTGGACTCGTGTCTGCAGAAGATCCACCAGGACAGACCTACCTCGGACGTGCTGCTGAAGcACCATTTCCTATGCAGAGAGCGTCCTCACACGGCGGTGATGGACCTGATAGCTCGCACCAAAGATGCGGTGCGGGAGCTGGACAACCTGCAGTACCGCAAAATGAAGAAGATCCTTTTCCACGAGGCCCTCAACGGGCCCCAGcccgagggaggggaggaggaggaggACGTGGAGCAGTACATGCTGCGGACAGGTACGGTCAACAGCATGGAGAGCTCCCATTCGCTGCCTTCCATGTCCATCAGCGCAAGCTCCCAGAGCAGCTCGGTCAACAGCCTGGCGGACGGTTCGGACGACAGCGGCGAGATGGCCATGATGCAGGAGGGCGAGCAAACAGTCACCTCCAACAGCTCAGTCCTGCACAAGCCCCTGaGCCATGACAACATCTACGACGACCCCTACCAGCCCGAACTAGACGCACAGCAGCAGCCCCCGTCACGGGGTGAGGGACGAGAAGGTGGCAGGCGGAAGGGACACCGCAGCCGAGATCACTTTGCCACGATCCGGACAGCATCGCTGGTGACCCGGCAGATCCAGGAGCATGAGCAGGGGTCGGCGCTGAGGGAGCAGATGTCTGGGTACAAGCGCATGCGGCGGCAGCACCAGAAGCAGCTGATGGGCCTCGAAAACAAGCTGAAGGCGGAGATGGATGAGCATCAGCTGAGGCTGGACAAGGAGTTGGAGAACCAGAGAAACAGCTTTGGAGGGGAGGGGGACAAGCTGAGCAAGAAGCACCAGGCTATCCTGGAGAAGGAgACCAAGGCAGCCCTGGCTGAGGAGAAGAAGTTCCAGCAGCACATCCTGGCCCAGCAGAAGAAGGAACTGACCAGCCTGCTGGAATCCCAGAAACGCCAGTACCGCGCACGCAAGGAGCAGCTCAAAGAGGAACTGAACGAGAACCAGTTGACCCCCAAGCGTGAGAAGCAGGAGTGGCTGGTGCATCAGAAGGAGTGTCTCCAGCAGCTGCAGGCGGAAGATGAGGCTGGGCTCCTGCGCCGCCAGAGGCAGTACTACGAGCTGCAGTGTCGCCAGTACAAGAGGAAGATGCTGCTGGCGCGCCACAATCTGGAGCAGGACCTACTCCGAGAGGACCTGAACAAGAAGCAGACGCTGAAGGACCTGGAGTGCGCAATGCTTCTGCGCCACCACGAGTCCACCCAGGAGATGGAGTTCCGGCAGCTGGGCTCGGTGCAGCGCACGCGGGCTGACCTGATCCGCACACAGCACCAGACGGAGCTCACCAATCAGATGGAGTACAACAAGCGACGCGAGCAGGAGCTGAGGCAGAAGCACGCCGTGGAGGTCCGCCAGCAGCCCAAGAGCCTCAAATCCAAAGAACTCCAGATCAAGCGTCAGTTCCAGGACACGTGCAAGATCCAGACGCGCCAGTACAAGGCCCTGCGCAACCACTTGCTGGAGAACACGCCCAAGTCGGACCACAAGGCGGTGCTCAAGCGCCTGAAGGATGAGCAAACGCGTAAGCTGGCCATCCTGGCTGAGCAGTACGACCACTCCATCAATGACATGCTGTCCACACAGGCTCTCCGATTGGATGAGACGCAGGAGGCGGAGTATCAGGTGCTGCGGATCCAACTGCAGCAAGAGTTGGAGCTGCTCAACGCCTACCAGAGCAAGATCAAGATCCACACCGACTCGCAGCATGAGCGTGAGGCCAAGGACCTGGAGCAGAGGGTGTCCATCCGCCGGGCACTGCTGGAGCAGAGGATTGAGGAGGAGATGCTTTCTCTTCAGAATGAGCGCTCTGAGCGCATCCGCACCCTCCTGGAGCGGCAGGCCTGTGAGATCGAGTCCTTTGACTCGGAGAGCCTCCGTCTGGGTTTCAGCAACATGGCCCTTACGGGCATCCCCAGCGAGGCCTACCCCAAGCAGGGCTACACCAACGCCCCACCAGTGTTCCGCTCCGGCGGGGGCCACTGGAGCCATGGCATGCACCCCCAGAACGCCCAGCCCCAGCCGCACTCGCGCCGCAGCCACAACAGTAGTAGCagtggagggggtgggggtgttGGAGGGGGGAGCAAAGGGGAGTCTTCTTCTTCTCACGGCATGGCTCTGGGGTTGGGTCTGGGGAGGGACGGGAGGGAGGTGCATCCTTCATCTCGTTCATcagcctcttcttcttcctcctcctcccaacaacaccaccaccgcCATCACCTGCCACAGcactaccaccaccaaagcacacCCCAGCTCTACCGGGAgcgggagagggatagagagagggagcgggagaaggagagggacagggagtggGCCGGTGTCCGAGGCAGCGGCGACCTGGCCCACCCGCAGCACCCCCATCACTTCTCCCACAACCTGCCCTCTCGCTCCTCCTCTCAGTCCCTGGCCCTGCTGCCGCCGCCGCCCCCCGCGCCCCCCTCCATCTCGGGGCCCTCCTCGTCCTCCTTGCAGGGAGGGGTGTATGGCGGGGGGCTGGCCGTCAGGGGCGGTCCCAGCCTCATGGCCCTGAGGAACAGCCCCCAGCCACTGAGGAGGACGGCATCCGGAGGGGGACCTGGCGGGGCGGGTGGAGGCGACGGGGTGCTGAGCCGCAGCACCTCGGTCACCTCGCACATCTCCAACGGCTCCCACCTCTCCTACTCCTAAAGAGGGGGGAGGCGGTGGAGGGTGTTCACccgagagagagcaggaggtaGGGAGTAGACGGGGATGGGGGAATGTAGCTACCTGTCTTACCATTGAAGTGGGTGAGGGAAAAGGATGCGGAGAGGGTGTCTGACTTTTTTTCTGAGGTGAGGCAGGGGAAGGGTAGGTATCAGTTTGAGGGTTGCTCTTCAAGGTAGCCATGTCTTCTTCTATGATGTTCTATAATGGAATGGAGGAAGCGAGAGAATAGGTGGGAAAGTGCATGGAAAGGGAAGAGATAAAGACAACAGACCTAAAAGTGAATGTATGTATGTTGTGTGTGGTGTCCTGATAATCTAGCAAACACTTGTGTTGTATGGCTTCAGAAAGGGAAGACATGGGGAACAATAAAAAATGCTGGTTTTAGTCTGCATTCAGAAAGGTAGCTATTGTTCGAAACACATTTTATTGGTTTATAACTTATTTGTTGATAGtgttttagtttattttgtaGATGTGTTTAAAACAAGTGGCTCGGGACGTCACCAAGGCCTTTAAGAAGTCTTAAAGGGATGGTGTGATGACCACGCAAGAATTACAGCTGATGTAAATTAATATGAATACACAGAATGTTTATAAAGGCAACAAACAGACCCGGTTTCATTAAAAATAATGAAAGCACctggaatggagagagacattTGTATGGACAACAAAATGACCTCAAAAACTTTTCTGTCATCCatgacatacactatatatacaaaagtatgtggacaacccttcaaatgagtgaattcggctatttccaacaagtcagtttgtcaaatttctgtcctgctagagctcccccggttaactgtaagtgctgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1554185 lncRNA downstream 2689 28177272 ~ 28177556 (-) True G1359773
TU1554183 lncRNA downstream 3038 28176957 ~ 28177207 (-) True G1359771
TU1554153 lncRNA downstream 46618 28133397 ~ 28133627 (-) True G1359748
TU1554121 lncRNA downstream 107717 28051545 ~ 28072528 (-) True G1359717
TU1554075 lncRNA downstream 176273 28002765 ~ 28003972 (-) True prrt2
TU1554226 lncRNA upstream 37418 28274766 ~ 28313407 (-) True G1359812
TU1554329 lncRNA upstream 232184 28469532 ~ 28469782 (-) True G1359899
TU1554325 lncRNA upstream 234840 28472188 ~ 28473229 (-) True G1359895
TU1554320 lncRNA upstream 255078 28492426 ~ 28501241 (-) True G1359890
TU1554404 lncRNA upstream 310932 28548280 ~ 28548519 (-) True G1359974
XM_036946693.1 mRNA downstream 3334 28165347 ~ 28176911 (-) False maz
XM_036946694.1 mRNA downstream 3334 28165347 ~ 28176911 (-) True maz
XM_021565530.2 mRNA downstream 3335 28165347 ~ 28176910 (-) False maz
XM_036946689.1 mRNA downstream 51406 28082978 ~ 28128839 (-) True tlcd3bb
XM_021565527.2 mRNA downstream 51429 28081911 ~ 28128816 (-) False tlcd3bb
XM_021565548.2 mRNA upstream 60905 28298253 ~ 28354447 (-) False eif3c
XM_021565547.2 mRNA upstream 60905 28298253 ~ 28355981 (-) False eif3c
XM_021565546.2 mRNA upstream 60905 28298253 ~ 28356595 (-) False eif3c
XM_021565537.2 mRNA upstream 60905 28298253 ~ 28369344 (-) False eif3c
XM_021565538.2 mRNA upstream 60905 28298253 ~ 28369344 (-) False eif3c
TU1554168 other downstream 16018 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 652108 27527163 ~ 27528137 (-) True G1359412
TU1553687 other downstream 820683 27357284 ~ 27359562 (-) True G1359321
TU1553460 other downstream 1066844 27111783 ~ 27113401 (-) False G1359119
TU1555797 other upstream 1259765 29497113 ~ 29497555 (-) True G1361290
TU1556170 other upstream 1686523 29923871 ~ 29925154 (-) True G1361619
TU1558520 other upstream 3402089 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 3648401 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 3781446 32018794 ~ 32019498 (-) True G1364348

Expression Profile