RNA id: XM_021565557.2


Basic Information

Item Value
RNA id XM_021565557.2
length 5030
RNA type mRNA
GC content 0.46
exon number 5
gene id si:ch211-214e3.5
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28833364 ~ 28857801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGTGCAGGATAACTACTTCCGTTTTTTTATACTCCGTTTTGCTTGTTTGGGTAGCACTCCTCACAGGCCGTTTGGTGTAtgctttttgttgttgctgagttgAAACTGCCTAAACTCTGAAAGGCAGGTATCTGGCTCCACAGCGGCGGCAAGCACAAACAATTGTGCAAACGCCATGATACCAaagaagaagtagtagtagtacccgGATGGAGCTGTCATGGCCGCCGTCGCTGAGCTGCAAGGCTGAAGAGAAAAGGAAGCTTGCGGAGCCCATCCCCACATCACCAACCCTGAGGGAGAAGACAGAACATTCATGTTAAGGCTTCCTTGGAAGGGGTAAAGgtgACTCATACATCTTTACTTTTCCAGGATTTTCATGACTGTACAAACCTTGTTTGCTGACCCAAGACTTGCTATAACTGGGAGCCTGTATATTGAAGcatggaagagaacctgatgacACAGGATGATCCCGCTGAAAGCCATGATGACATCATGGAGGCTGAGGAAGAAAAGGAATCCACAAAGGACCACACAGACCAGATGGCAGGTCAAACTTCTGTGTTGCCATGTAGTGACCAATGTGACCCCGATGAAACATCTGAAGAGTCGGGTAGTTACAAGACAGACAGAAAAGCATCTATGAAGTCCCCATGTAAAATACAGCAGGGTGCAGTCTTCTCTGGGAAAATACTTAGCTTTGGGTGTTCAGAGTGTAAGGGTGAAGCTACCTACAGCCCCAATGACCTCCTCAAACATTTTCAGGTGGCCCACAAGGGAACCCTGCCGACGTATCCGTGTGACTTGTGTGGCTTTGCCACAAATGAGTTCCCTGCACTTCAGCGCCATCGGATTGGGCACAGGAACACTTTAGTCACATGCGAGATCTGTAATGATGATGTACAGTACTCTCTCCTCCTGCTCACTAGACACTATATCATGTCTCACAGCCAGAATGGCCACTTTCACTGTGAAAAATGTGAATTTTCAACAGTTGACGCAGGAACATTTGTGCAGCACATCCATCATCACAATGAGAGCCAGCTCAAATGTATGAAATGTCAACATGTGAGCTCTAACCGAGGTGAGCACCAGAGGCACCTAAAACTCTACTCGGGTACCTTCCCCCTCACGTGTCTGGTCTGTGGATATGGGACAGCACGGAGAGAATACCTCACAAAGCACATGGTAACTGTCCATGGTGAGGAGGCAGACAATAAAAATGTATGGAGAGCAACGGAGGACAGCAACAATACCCTGGTAAACTCCTCTCCAGGATTAAAACTCCTGCTGAAGAAAAGTCTTGCTGCAGGTGGTCAATCAAAGGAATCCCAGTGGATGTCAAAACTGAATTCTCTTCCTGGAGTGGGTTTACATAACCAAAATGGAAGGGTGCTGaaaccagagaaaacattggaaTCCCAACAGTTTCATGAAAGGGCTGTAGGCGTGAAAAAGGACAGTAAGAAATGGTTCAAAGGCGCTCTTAAGAATGAGCAACAAATTGACTCCCAGGCAGTATCATCTATACCACCACCAAAGAACCAGGAAGGTTTTGACAGTTATGGGGCTGACGCCCTAAACCCCAACAACTCCAATGGACTAACTGTTCTCATGGTCAAAAATAAAATCTCTATTCCACCTAACTGTACTACAAAAGTAATGGGCTTCAAGATGGTTGACGGTAAAAAGCATTTAGTTCTCAAAGTTATACCAACAGCAAAGCCAGAGTTCTCCGCAGAAAATGACATTTTATCTACAGAGCAAGAAGTGGACTGCCCAATGATAGGCACTACCTCTGATGGAAGTAAATGCTCAGACACGGCTGAAAATGGGGAAAATACTAGCTCCCCTTACTTGGCTGTTCTAAGCCCCTCAGGGACTGATAGTGATGCTGCAATTTCAGTACAAGTGAAGCCAGAGGAAGAAGACGTTAGCATTGAGGAGACATTGCCCAAACTGGAGAAACTAGCACAGAAAGCAAAACACACAGTGGAGCAGAGGATTGATAAACAACATACGTTTAAGGGTGACCAGATTCCTTCCTTGGCAGTTTCTCCAATGACTAAAGAGTCAGATCACTCCACGATTGAGAACGGTAAACTGAGTAATAATACAGCAGACAAAATGTCTGCTTATTCAAGCCCTAATGTGACTGCTGTGGAGCTCCTTCCAGCCAAAATACTCACACATAATACCATGCCTTCTGAATCAGCTTATGAGACTATGCTTCCCAAACCAGTTTCTGAAGAGACAATCAACATGCTTGGAGTTGGTGACATGAGTACAGCTACTGCTGATAAGATCAGTGACCCCATCAATGGAAATTCGTCTCGGCCCAAAGGAGAGACGTTACCCTCCAACAACAAACCTAAGACTCCCTCAGAACCCATGACTGGTGACATCCAACCTTCTAATGATACTGCTGAGAAGACTCATTCAGTTATCAAGGAGATGGATCCTTCTGATTCTACGTCCGATAAGATTCATTCCAGTGTGGCTGCTAAAACTGAAACTTTATCGCCAGATCTGACGGCCCAACTGGAGTCACACCCAGCTGAATTTGTCAACTCCAGAGAGACCGATATTAATGCTGAAAATAAGAATTCTCCTAACCAAGAGTTGTTTAGTTTTCATAATTACTCAAAGGAAACATCAAGCATTTCCTCCAACTCAACACAACCTTGTAAAAATCCATCAGAGCTTTCGACAGAGGATGAAAGTGTTTGGATGAAAGAATGGAGTTTGACATTGGCTGCATCCCCACAACCTCCAGATGAGGGGTCTGGAAATGGGGAAGCGGAGACAGAGAATGTAATGGAAAGCGTGTCAGACTGTGGCGTTGAGGTCGACGAGTGCATAGCTATTGTAGAGGATCTGGCCACCCCAGTGGAAACTGAGAAGGCAAATCATGGACACTCTGGGTCTACACAAGTCCAACCTACTGTAAAAATGGAGGAGTGTGTTCCTTTGTTGGAAAGGGCAACAGGGAGCATAAGTAGTTTGGCTGTCTTGGGTCGCATACTGGAGGAGCATTCGGATGCTATCATTAGCCACCAGCTTGAAAAAGATAGAATAAGCTGCTCAGCTGCCAGCCACGATTCTGTCAAGCCACCTACGACTATGCTAAGGATCCTTAAAACAGCAGAGGGAAAGCAGCAGATGTTGTTACAGACTGCAAAGAACCGGTATGCTGTACCTGTGCAGCTCCAAGGCAACCCAGGGTTCAAGCTGATAACCAAATCTACTCCTCATATCAATGTGTCCTATGTTAAGCCAGGAATTGAAAGACAGAATAAAACCACAGGGCTGGCACTCACCCTCAATGGAGGAAGTTTCAGCATTCTAGGACAGACTGTAGGTGCTAGTGAAAAAGGTGCTATGCTGTTGTCTACTGTTCAGCCTGGATCTAGCACTAGTGGAAGCCACTACCTAGTCAACAGCACAGCTCTTAAAGGTCCTCTTGTCTTGTCAGGTGCAGCACATAGTTCTACTGGAGAAAATACCATAAAGTCACCGCAGACTTGTTACTTAGTCCAGAGGCCAGTCCCTGTAGGACAGGCCCCCCACAATGCTGGTAACAAATTGGCACGCTTAAGCTCGCAGTCTCCACTTTTGTCCCGTCCAGTTCTGGCAATGTCTGCAAACTCAGTGAACAGATCCACTGCATTGCACACTGGGCAACAAGCCTTCTTGGTTAGGTATATCTCTACCGCTAAGTCAGGGATGCTTATGAATAGTCCTGATGGGAAGTCTGTGAACCAGAAAGGTCAACCTAATGAAAGTAGGGGAAATAAAGTTGTATATAAGATAGTCAGAACTGCCAATGGTAGCGCGTTCCTTTCTGGTGGTACACATTCCTCAGCCAACAAGCCCATTTATCTGGCCACAAATTCCACACAGATGCCATGTTTTCTGATGTCATCAAATAAAGTCTCATCGGGAGTGAAAAAACTGATATCCATACAAAATGCCTCCCACAACCCTGTCACGGCCTCACAGCTCTCAAATCTTCTTTCCCCCCAATCCAACTTGCAAGGTAGGGTCAGGCAGATAACGGACGTAGGTCTGAATAAATCCCCCCTTGACCCAAGGCCAGGTCGCCAGCTAAGTCAAAGGAAGAGGCGCAGGAAAGCATTGTGTGATGAACTCCCAGAGCACTTGACTAAAGCGAGGAGGCTCTCGAGCAAGGCGGTAACTGAAAAAGGGTCTCCCTTGCTCTGGGAGCCTGTACCCAAAGATGCAGAGAGGACACTGAGACTGTATCCATTCAGTTCACTACAAGAGATTAAGTGCCCTCGCCGAAATCAGCCGGTAGTTGTTCTCAACCATCCTGATACAGACATTCCTGAAGTGGCCAGTATCATGAGGTCCGTCAACAGGTACAAAGGTGCTGTTTCCAAGGTGGTACTGTCTCAAAACACAGTTCAAGCTCTGGCTGAACTCTGCCCAGCCAGACTTCTGGGGAAAAGCTCCAAGGCTAAATGTCCCTCGTCACAAAGCAGTGGCTCCAGACTTAAGACTTCAAAAAGCAGAGTCCGAGAGCGATTTCTGTTGAAACTGAAGTTTAGAAAGTCTAGCAGGAAAAAGTATGAGGTGGTGAAGTCCTCATTTAGAGGTACAGAGAGGTCATCAATGTTTGCCTGCTGGTTTTGTGGTCGACTCTTCAAGAACCAAGAGGAGTGGATTGGCCACGGCCAGCGGCATCTCATGGAGGCGACCAGAGACTGGAATAAGCTGTTTTAAAGCTGTTACAAAGCCCCTGGATTGGCCCACATACCGTCCTATAGAGTGGAACAAATGGAGAGgttaaagcatttttaaaattaCTTATCAGTATACTTTATTCTTATAACGGTGTATATTCCCATAAATGCCCTAATAGCTATGATTGAATCacggttgttgatgtgtggtgtAAACTGAAACACGTACCAGtcgagtttggacacacctactcatttaagggtttttctttatttgtactattttctaaattgaacaataatagggaagacataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1554621 lncRNA upstream 15109 28818050 ~ 28818255 (+) True G1360190
TU1554609 lncRNA upstream 23003 28810154 ~ 28810361 (+) True G1360178
TU1554601 lncRNA upstream 29909 28803252 ~ 28803455 (+) True G1360170
TU1554567 lncRNA upstream 60539 28772625 ~ 28772825 (+) True G1360136
TU1553402 lncRNA upstream 110788 28720708 ~ 28722576 (+) True G1359062
TU1554672 lncRNA downstream 6908 28864709 ~ 28865439 (+) True G1360238
TU1554678 lncRNA downstream 15252 28873053 ~ 28873278 (+) True G1360243
TU1554680 lncRNA downstream 20513 28878314 ~ 28878528 (+) True G1360245
TU1554683 lncRNA downstream 23753 28881554 ~ 28881868 (+) True G1360248
TU1554684 lncRNA downstream 24889 28882690 ~ 28883403 (+) False G1360249
XM_021567340.2 mRNA upstream 225463 28579369 ~ 28607901 (+) True LOC110492866
XM_021565535.2 mRNA upstream 545556 28278657 ~ 28287808 (+) False nif3l1
XM_021565536.2 mRNA upstream 545556 28278770 ~ 28287808 (+) True nif3l1
XM_036945853.1 mRNA upstream 567342 28260283 ~ 28266022 (+) True cabp5a
XM_021565522.2 mRNA upstream 751993 28049494 ~ 28081371 (+) False pagr1
XM_021565559.2 mRNA downstream 67016 28924817 ~ 29353460 (+) True nrg3b
XM_036946708.1 mRNA downstream 566540 29424341 ~ 29480114 (+) True LOC110491795
XM_021564413.2 mRNA downstream 623843 29481644 ~ 29492902 (+) False irf3
NM_001257262.1 mRNA downstream 623923 29481724 ~ 29492457 (+) True irf3
XR_005036501.1 mRNA downstream 645608 29503409 ~ 29511609 (+) False LOC110491796
TU1552979 other upstream 785974 28046682 ~ 28047390 (+) True G1358698
TU1552849 other upstream 887523 27903050 ~ 27945841 (+) False LOC110491776
TU1552634 other upstream 1256272 27561147 ~ 27577092 (+) True LOC110491768
TU1552517 other upstream 1501089 27329311 ~ 27332275 (+) True G1358292
TU1551398 other upstream 2518563 26311696 ~ 26314801 (+) True mpp3b
TU1555703 other downstream 944853 29802654 ~ 29804368 (+) True G1361207
TU1556224 other downstream 1085640 29943441 ~ 29943756 (+) True G1361671
TU1557278 other downstream 1845846 30703647 ~ 30704108 (+) True LOC110492869
TU1557509 other downstream 2096808 30954609 ~ 30955975 (+) True G1362902
TU1558037 other downstream 2376692 31234493 ~ 31235386 (+) True G1363401

Expression Profile