RNA id: XM_021565567.2



Basic Information


Item Value
RNA id XM_021565567.2
length 1203
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110491802
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 30142429 ~ 30144341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGCTCTCTTGAAAAAGCAGTGTGAGGGAGAAAAGGAACGTGGAAGCAAGGAAAAGGTTTTACTCACAGATGCTGGATGTGACTGAAAaagAACATGGCGACTATGAACACCACCAGTGATCTAGCGGTCAACATCTCTTCCACCCTTTCTTTTACAAAATCACCACTACTTTTCAACCTATCCAGCCTgcccacctccctctcttcctcccccctgcCATCAGAGCCTCACAACCCATTGCTGACCATCATGGTGGTGTTAGGCCTCTCCCTGCTCCTGGCTGTCTGTGCTATCTTCCTGGCCGTGTGTTGTGGGTCGTCAGCCCAGACAGAGGAGGACTCAGTTGGGGGTTGTAGTTCAGGCGAGTCCCTGGTCTGTGGGCCTTCTCTGTCATCGGAGCCCCAGCTCAAGCTGTGGAAGCGACTGGGCTCTGTACAGCGGTCGTTCACCTCCTCATTCAGACAACCGCCCCAGTGCAGGCCCGAGTGCAGCACCCACTGCTCCCCAACCAGACAGCAACCGGACCACAGCAGCTTACCCACCTTACCATGCCCTGCCTGTTTGACTATGTTACAGAGATATGACTACGCTCTGACCGTGAGATGAATGCAGGCCCGGTCATGGAGATGACCGCTTTGACTGTAACTTGACCAAAGCACTTAGACTTGACCACAGTCCTGCATGTCCATGGATGTACTGCTAACTAAACAATGACACTAACTTCTGATCAAACCCCCACTTCAAGATAACCACATGGACTGGTGGAGTAAAGGTTGTTTGGGCCATGTTGTTAATGACAAGAGAAGCAGGTGCAAGCCCAAGGTTCTTCCAAAAGGGATAACAGCCTACGTGGATGATGTGAATTGTTTCGTACATTTTGATTGTTGTATTAGCTACAATCTTACAAAAAAAGGGTTCAAAAAGTGTTATTCGATTGTTCCCAAGTAGAAACTTTTTGGGTTCCAAGTAGAAcgctctgtggaaagggttctacctggaacaaaatagggttttacatggaaccaaaagggttctaccttgaaccaaaaagggttattcaaagggttatcctatggggacacccAAAGAAccttttaaggttctagatagcaccttttttttctaagagtgtagaacagtttgtgttattattttattgtattaAAATGTAGTTTGTTTAAGAAAATTAAAAGCTTTCTCAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1556297 lncRNA upstream 117735 30022415 ~ 30024694 (+) True G1361741
TU1556250 lncRNA upstream 180267 29961947 ~ 29962162 (+) True G1361695
TU1556247 lncRNA upstream 182110 29960031 ~ 29960319 (+) True G1361692
TU1556246 lncRNA upstream 182748 29959457 ~ 29959681 (+) True G1361691
TU1556244 lncRNA upstream 183765 29958449 ~ 29958664 (+) True G1361689
TU1556437 lncRNA downstream 61489 30205830 ~ 30295068 (+) True G1361870
TU1556513 lncRNA downstream 157532 30301873 ~ 30305675 (+) True G1361945
TU1556515 lncRNA downstream 161958 30306299 ~ 30306512 (+) True G1361947
TU1556531 lncRNA downstream 193959 30338300 ~ 30338549 (+) True G1361963
TU1556535 lncRNA downstream 198884 30343225 ~ 30343438 (+) True G1361967
XM_021565566.2 mRNA upstream 217265 29907292 ~ 29925164 (+) True LOC110491801
XM_021565565.2 mRNA upstream 363288 29776440 ~ 29779141 (+) True LOC110491800
XM_021565564.2 mRNA upstream 415110 29714278 ~ 29727319 (+) True LOC110491799
XM_021565561.2 mRNA upstream 513418 29534042 ~ 29629011 (+) True LOC110491797
XR_005036502.1 mRNA upstream 525401 29534042 ~ 29617028 (+) False LOC110491797
XM_036945881.1 mRNA downstream 455053 30599394 ~ 30658325 (+) True LOC110491805
LOC110492869 mRNA downstream 556658 30700999 ~ 30704172 (+) False LOC110492869
XR_002469090.2 mRNA downstream 563682 30708023 ~ 30708936 (+) True LOC110492895
XR_002468906.2 mRNA downstream 873234 31017575 ~ 31074748 (+) False LOC110491812
XR_005036504.1 mRNA downstream 873234 31017575 ~ 31074748 (+) False LOC110491812
TU1556224 other upstream 198673 29943441 ~ 29943756 (+) True G1361671
TU1555703 other upstream 338061 29802654 ~ 29804368 (+) True G1361207
TU1552979 other upstream 2095039 28046682 ~ 28047390 (+) True G1358698
TU1552849 other upstream 2196588 27903050 ~ 27945841 (+) False LOC110491776
TU1552634 other upstream 2565337 27561147 ~ 27577092 (+) True LOC110491768
TU1557278 other downstream 559306 30703647 ~ 30704108 (+) True LOC110492869
TU1557509 other downstream 810268 30954609 ~ 30955975 (+) True G1362902
TU1558037 other downstream 1090152 31234493 ~ 31235386 (+) True G1363401
TU1559558 other downstream 2257093 32401434 ~ 32401808 (+) True G1364768
TU1559704 other downstream 2462449 32606790 ~ 32607133 (+) True G1364907

Expression Profile