RNA id: XM_036946718.1


Basic Information

Item Value
RNA id XM_036946718.1
length 3174
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC110491813
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 31474791 ~ 31496300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taagggagttatactccagtctaataggtggcggtaatgcaacatttattggatgctaACCGCCGTTAAAACTCATCGAAGAAGAAGCAACAACAGCCGCTTTTGACTCTTAGGATATAGCTAATATTACCACTTTGTTTCATTTTAGCGTGGAACAAATATACCGGTAGCTAATTAATCCAGAAATGAATTACTATCAACGGTGTTTTATATCTTTCCGTTATTTGTTCTAGATGGTTTTATTGTTGTATTCAGCGCTAGTGCCATTTGGCTAgctagtaacgttagctaacgcgTTAGTGAAAGAGTTTAGACAGACTCTAGCCAGGCTCTAGCTACAGGCTCTACAGGCTCTAGCTACTTTGTTTACGTCTTGCTTTACGAACTTCACCTGGCAAGCTAGCCACTCCGGTCCACTGTGGAACTAGGACACGGCATGGTTGTGGGCATATAGGCATATCTAACAATTGTATTGTTCTGTCAGCCTTCCTGCCTTGGTAAATAAAAAGTTGCAGAGTTGTTGGAGCGCTAGAGAAGGCCTTTACTAGCCTGACACTATCACACCTGATAAAACCGATAAAACATTCTGATTGAACTGATCAACTAGACATGGTCGGAAGCGTCATAGCTGAATCTGTTGTGTTAGTGCAGGGCTGAAAAACAGTCCTGCACACTCCAGTTGGAGACTACTCCGGAGGCTTCACAGCAAATGTCACGTGAAAGTCATTCTGTCCAGGGTAACTGACATATTACACTCTCGAGCCCTCCACAgctgagagggatggagaaagtcCCGGTCAAACAGAGCCAAGTGTGTGGGCTGTGGGAGCTGAAGGAGCAGTTGGGGACCGGAGGGTTTGGACACGTTTACTTGTACCAGCACCTGgagacATCAGAGAAGATAGCAGTGAAATTGTGTCGTCTGGAGCTGAACTCAAAGAACAGAGAGCGCTGGAGTAGAGAGATACAGATTATGAAGAAGTTGAGCCATGATAATGTGGTGAGAGCCAGGGAGGTTCCAGTGGAGATGAGTTTTATAGCGCTCAATGACCTGCCACTACTGGCCATGGAGTATTGCTCTAGAGGAGACCTACGCAAGCTGCTGAACAAGCCAGAGAACTGCTGTGGACTGAAGGAGAGTCAAGTCCTTTCTCTACTCAGCCATGTTGGGTCTGGTATCCAGTACCTCCATGAGAATAAGATCATCCACAGGGACCTGAAGCCTGAGAACATCGTATTGCAGGAGACCAGTGGGAAgTTTGTCCATAAGATCATAGATCTGGGTTACGCTAAAGACTTGGACCAGGGCAGTCTCTGTACATCCTTCGTCGGAACTCTGCAGTACCTGGCTCCAGAGCTGTTTGAGAATAAACCCTATACTgtgtcagtggactactggagttTTGGGACCATGATCTTTGAGTGTACCTGTGGCTTCCGCCCGTTCCTTCACAACATGCAGCCGGTTCagtggaccaATAAAGTGCGCAACAAAGGTCCCAAGGACATCATGGCTGTAGAGGATATGAATGGAGAAGTGAGATTCTCTACACACCTACCCTACCCCAACAATCTGAGCaggtccCTGTTAGAGCCAGTGGAATCTCTGCTACAGATGCTGTTGTTGTGGGACCCTGCGACAAGAGGAGGAGTGACAgaccgtgacacacacacaccctgttgcTACACTACCCTACAGAGCATACTCAACATGAAGGTGATGCATGTGTTGGACATGACGTCGGCCCAGCTCCACTCCTTCGTCCTTGGCAGTGAGGAGGGGTTACACTCCCTGCAGCAGCGTGtggagacacacacccacacacacatccctccgCTCAGCCAGGAGCTGCTGTTGGAGACTGGAGTCTCCCTGGACCCTCGCAGACCACCAGCGCATTGCCTCCCTGATGGACCGCGAGGCTGGGACAATGCCATAGTCTACCTGTTTGATAAGAGTCTGACTAAATACTCTGGACCTTTCACTGCCCGACCCCTGCCTGACAGCGTCAACTTCATAGtgagggAGACGAAGACCCAGCTGCCTCTTGCTGCTCTAAGGAAGGTGTGGGGAGAGGCTGTTAGCTATGTCTGTGGTCTGAGAGGGGACTACAGCAGACTGTACCAGGGACAGAGAGCTGCcatGTTGAGTCTGCTACGCTACAACACCAACCTGACGCGGTATAAGAACGTGTTGTTTAGCCAGTCTCAGCAGCTCAGAGCCAAACTGGCCTTCTTCACCACCAGCATACAACAAGACCTACAGCACTACGACCAGCAGAGAGACACTGGCAtctCCTCTGAAAAGATGCTGAAAGCCTGGCAGGACGATGAACAGAAAGCTGATGCCTTTACACAGGTATCAGAGGTGGGCTATCTGGATGAGGAGATAGTGTGTCTCCACTCTGAGATCGTGGAGCTGCAGAGGAGTCCGTTTGCCAGGAGACAAGCTGACATCATGGAACAACTggaggaGAAGGCCATTGAACTTTACAAGCAGCTGAAGGCCAAATGCAAGAgtcCAGACCCCCCTCATGGCTACAGTGACAGTTCAGAAATGGTGAAGACCATTGTCCAGACAGTCCAGAACCAGGACCGAATCCTCAGAGACCTGTACACACACCTCAGTAAGATCTTGGAGTGTAAGTGTCGTATTGTAGCATTGTTTCCTAAGCTGGAGGGGGCAGTGGAAAGCATCAAGGCAGCAGAGGCTGCAGTCATGACTATGCagatgaagagacagagagagttctGGCACCTGCTCAAGATTGCCTGTGCCCAGAATGGCAGTCACAACTCTCTAACCCCCAGCTCAGACGCCTCTAGTCCCCCTCCTCTCACCATGAACccactaagacacacacacagTGAGTCAGTATGCCACCTACTGGATGAGAACCAGCGTTACCTGAGTCAGCTGACCTCTCTACTGCAGGAGGCCTCACAGGACAAAACATGCAATATCATGGACCAGGACTGGAGTTGGACTCAGTATGGATCTGTGGTTGACCAAACCCTGGAGActctagacacacacacgcactagtAATGTGTGGGTTGACTCATAATCCGCAGTCCCTGCGGTGAAATCCACAGGGTGGGCGGGTatagggtcatgaaatattgtgtggatgaagggtggGAGGCGggcgggttgaataaagagaaaataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1558568 lncRNA downstream 2259 31472331 ~ 31472532 (-) True G1363876
TU1558566 lncRNA downstream 5817 31467896 ~ 31468974 (-) True G1363874
TU1558564 lncRNA downstream 6056 31467896 ~ 31468735 (-) False G1363874
TU1558457 lncRNA downstream 128408 31345975 ~ 31346383 (-) True G1363777
TU1558423 lncRNA downstream 152976 31314091 ~ 31321815 (-) True LOC110491807
TU1558631 lncRNA upstream 86153 31582420 ~ 31627693 (-) True G1363938
TU1558557 lncRNA upstream 174171 31670438 ~ 31676016 (-) True G1363871
TU1558550 lncRNA upstream 183880 31680147 ~ 31682329 (-) True G1363866
TU1558555 lncRNA upstream 187027 31683294 ~ 31684951 (-) True G1363869
TU1558554 lncRNA upstream 196396 31692663 ~ 31697167 (-) True G1363868
XM_036946713.1 mRNA downstream 12546 31314094 ~ 31462245 (-) False LOC110491807
XM_021565580.2 mRNA downstream 28935 31314094 ~ 31445856 (-) False LOC110491807
XM_021565584.2 mRNA downstream 28936 31314094 ~ 31445855 (-) False LOC110491807
XM_036946712.1 mRNA downstream 28936 31314094 ~ 31445855 (-) False LOC110491807
XM_036946717.1 mRNA downstream 28937 31314094 ~ 31445854 (-) False LOC110491807
XM_036946721.1 mRNA upstream 216034 31712301 ~ 31728923 (-) False si:ch211-28p3.4
XM_036946722.1 mRNA upstream 216034 31712301 ~ 31728924 (-) False si:ch211-28p3.4
XM_021565602.2 mRNA upstream 216034 31712301 ~ 31728943 (-) True si:ch211-28p3.4
XM_021565604.2 mRNA upstream 454252 31950519 ~ 31958001 (-) False ttc34
XM_021565603.2 mRNA upstream 454252 31950519 ~ 31958002 (-) True ttc34
TU1556170 other downstream 1549637 29923871 ~ 29925154 (-) True G1361619
TU1555797 other downstream 1977236 29497113 ~ 29497555 (-) True G1361290
TU1554186 other downstream 3293851 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 3310564 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 3946654 27527163 ~ 27528137 (-) True G1359412
TU1558520 other upstream 143170 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 389482 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 522527 32018794 ~ 32019498 (-) True G1364348
TU1559908 other upstream 1138198 32634465 ~ 32635511 (-) False G1365099
TU1559909 other upstream 1138296 32634563 ~ 32635511 (-) True G1365099

Expression Profile