RNA id: XM_021565612.2


Basic Information

Item Value
RNA id XM_021565612.2
length 7013
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110491822
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 32056948 ~ 32096133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACGCCCTTCTTCGGATATTACATTGCTTTTGCGGAGCTAAATATGTTGCGGACCGTTATAATGTAGGCTGTCGATCAATGTTTCGATTAGGCTACAGGCTAAGAAACCCATTTTGGCCATACGATTGTTTAAGATATGTTATAATTTCTGGCATTTATTTCAGCATCACAACATGAAGACGGAGCCGTTAGTTTGACCAAACCTCCACGCAGCACCCGGTATGAACCGGTTTGGGTTATGCGCGATCTCGTGCTACTCCCCCCTCTTGACATGCAGTGTATCACCGCATCCGCGCGCCCTCGTTGGTCACACCCCTATGTTAAGTCACGCATTCTCACCCGCACACATGCTTTGCGAGCCTCCGCAGCATCAGCCTCCTGATTGGACAATAACCCCGGGTACATTCGTTTTCGTCCGGCGCCCCGGGGTTCATTTTAGAACCAATCCAATTGTCTAAAATACACGAACTCGGCCCATTCAGTGTCATGAGCGAGCTAAAACGAATGCACCTATTAATGCGCCCGTTGGTTGACAAGCTGCGATTGGTCGGTATGATGACATAAACTCGATTATCATTCTCCATCTATTTTCGGGGAACGCGGACAATTTTGTTGTAAGCGAAGCGCGTGCTTGAAGAAAAACGCAGAACTGGAAACAAACGTGCACCTTTTCAGCACCCGATCCTCGTGGATAGCCGTACAGGTCCATTCCGCCAACAGCTAATCAATCAGACCAAACAAGCGTGGGTATACAAGCAGCAGCCTTCTTTTTTTCGATAATCATACAGCTACCACAATTGTGTTATTCAGCCAAGCGGCTCCCACGTTCACTGGATACCAGGCCTAGCTGTTGAATTCGATGAGCGGAGGATTCGAAGCAATACTGCACAAGCTTTGTTTGCCCTAAAGGGCTGCAAGTGCAAGGAGCCATAGCTAATACTGCTACAAGTATTGTTTGTAGAAGATAATACATGCTGATATAGATGAGAACGCCCTTATAAACAGTGTAGTGGAGTTACACAGCCTTTGTCTTGTGGTGCTTATGATTCAGCGGGATGTTGGATCGGATGGGACCAGGAATAACGGCCTGCAAATGAAGGGACGCAAGTAGAAATCGAGTAATTAGTCGACTCCATTTAAACGAACAGACTCAATCGTGGTATTTGCTTTTCCCCCTCCACATTGCTTGTTCGTGTAGCTGCACTCTATTGTGTGAGCATCTTTATTATTCCCTTCGCTCTGACCAGGATCCTGCTAGCTCGCCCGCCGCCCCATCGGCCACAGCTGTGTATTAACTACAATTTTTTTAATCGGCACGGCACAGTTCGATATAAACATGTGTTCTCGAGTTTGGTTTGTGACTGACCGGCGTATCCATCAGGAGTATCCGCAAGTTCAGATCCTTCGGGCTCTGAAACAGCGATGCTCCGAGGAGGATGTTGAATTCCGCTCTCTTCTCATGGACCAAATCGTGCTCACCATCAGCGAGGGACAATTAGGTCTGCGGGTCGAGCAGGAGGTGGTGACGTCCTACCCTCAGGTGGCGGTGGTGCGAGTCCCCACCCCCTGGGTGCAGTCGGACAGCGACATCACAGTGCTACGCCACCTGGAAAAGATGGGCTGCCGGCTGGTCAACCGGCCCCAGGCCATCCTCAACTGCGTCAACAAGTTCTGGACCTTCCAGGAGCTGGCCGGCCATGGGGTCCCACTCCCTGACACCTTCTCCTACGGAGGACACGAGAACTTCCGCAAGATGATTGATGAAGCGGAACCGCTGGGCTACCCTGTGGTGGTGAAGAACGCACGTGGTCACAGAGGAAAGGCGGTGTTCCTGGCCAGGGACAAGCACCACCTGGCCGACCTGAGCCACCTGATTCGCCACGACGCTCCCTACCTCTTCCAGGAGTACGTGAAGGAGTCTCACGGCCGCGACGTCCGGGTGGTGCTGGTGGGCGGCCGCGTCATTGGCTCCATGCTGCGCTGCTCCACCGATGGACGCATGCAAAGCAACTGCTCCCTGGGTGGCGTGGGGATGATGTGCCCACTGAGTGAGCAGGGCAAGCAGCTGGCGGTTCAGGTGTCCAACATCCTTGGCATGGACGTGTGCGGCATTGACCTGCTGCAGCTCAACGACGGCTCGTTTGTGGTGTGCGAGGCCAACGCCAATGTGGGCTTCATTGCCTTCGATCAGGCGTGCGGCATGGACGTGGCGGGCATCGTGGCTGACTACGCCCTCTCACTGCTGCCTAGCCGCCTGACACGCAAGATGTCGCTGCTCTCGGTGGTGTCCAGTGCCAGCGAGACTAGCAGCGAGCCTGAGGTGTGCCCGGCGCCCAGTAACGTACTGCCCGAGGCCGTGTGCAACATGAGCGTGGGGTCCACTTCTAGTGAGAGCGACCCCGAGCTGGCCGATACCACCCCGCAGCCCACGAGCCGCCAAGTTGGCCCCAGCCCGGTCCTGCCCAACCTCCCTGACCCGGCCTACAACTTCAACACCCTCCTCGCCAACGAGATCAAACTATTGACTGAGTGAGCCGAATACAGCCACGGCACACatgcacacttacacacacagacacacacacacctgaacacatgGCGATGGACATTCCTgttacagagcacacacacaaactcctatACACATTATACAGGCAGGATGTTACATGCAAAAGCATGAGCTGAACAAacaaaaatgaaatgaaaaatgCCATGACCACAGAAACTGACATTACGAACATTCTCTTACTAACTCCCCCCATAAACACATAGAGATCTGAGGCTGCTCCCCTGACTCTACTGCTCTTCTCCCCAACTGCGAACAACCCAGTTTTACAACCGCAGGTGGTGGCAGAAGTGGGATACAGAAGGTTAGATGAATTACTGAATCTTTTTGTTTTCAATTGCATTGTGTATTTTGGAGAATGAGAATGATGCGTGGTCGTCGTTATAGATCAACCACTGAGGAAGTAGCCAGGCTTGATTTACTGGTGGTGAAATGAAGTGTTTTTCAAGTGATTTTCTCCATAACTGGGCGAGGGGTACATACAGAGGACTAGTTAGACTGCCCACCAGCTCCATGTAGCAGAGGACAGACCTGGTTCACCGTCACAGGGACTATTAAGTGCagattggggtcaattccattttctACCTCAGTTAAATCTGGAAATGGGATGATTGAAAttgacaaataaaaaaatcactgTCACATTTCATTCGTATTAAATTCACAAATTGTCTGTAATCAAAATGGGACTTACCACCCAATGCTGACAAGGAGCCCCTAAACACGGGATCATTAGAATAACAAAACTGACCTAGCACCATTGCCAAGAGGCACCTTGTATAGTAACAACACTACACGATACCCTCTCAAGAGATTCCATCTAGAAATGCATAAGCATAGGTCAAGCACAATTGACCCTGAAACTCTAAAATCGAGCGCTACTGTCACTTGGTTTTCAAGTTAATGTTTTTAGCGGCTTGTTTTTATTAGGATTTTACAAGAACAATAGTCAAACAGCGACTCTTTCTCTTCATCTGAAATAAAGCACTTTAAGATAAACCGATGAATTGCGTGGTGGAACTGCATACTCGggagcaggttgacgtttattgtcatgagggttgtcctggaggcagaactgagttatttccccttagataggctagctgcaaagtcaaatttgtcaatattgtaaaaattcatgaaaagtaaaatgtgctttttggtctcaATTTAGGATTAGAGATGTTATGATtttgtggctgtgctagctagtgaccattctgcagagctgcctccagaacaataTTCATGACGAAAAACTCTAACCTGATACTTTGGAGGCAAGTTCAATCCGTCTAGAAACAGTGCGGAAGCTGTCACTACACCTACAAGAAAAATATACCTCAATACAGAAAACTTCTCACTGCCATAGAATAAACTACTTTGAGTCATACATATCAGCCAGCATCCTTGACTTTACAAGATGTCCCTCCCTTGATACATAGggtgtagatatactgtagtcaagtacattttttgtaaataataattttagaAGTGTTCATGCTTACTAGTCTGGCTGATATGAAAACCATAAGGGCTGAAATAACTTTCTCAACTTAAACATTTTGGTAAACTTGTGTAGAAAAGATTGGTTTGTACAGAACTGCAATGTCAGAAATAAATGTTTTACAAAAAACACAAGTGCTAACGTTTCTGTGGATTTGGCTAAATGTGTTTAATCAGCCCAACGTTTTGGCCGGTGATGAATTACTGTTTATTCAACTCAAGTGAGGTAATCTTCATAAACCTGTTGTACAAATAAAATGCAAAACAATACTTACTTTTTTTTACAGTGTGTTTGATAGAATGTTACTTTTTTTATTCCTCAAAAGGAAAACTTCTCCAGGGATATCTGTTGGTTACTTGCGGTAAATCTACCACTCAGCCTTCAAAAAATACCTATCCTCTAGGTATTAACTTTGGGGCATCCATCATCAACCAAAAAGCATTCGCTGTAATCATCCAAAGCACAAGCCACTCTACTTTGTGCCACTTAGTGACTAGCTACAGCATAGTGTTGAGGCGAATAACCCATATGTAAAAGGCTTCGATGTCAAACCGTTGACTCTAACATAACTCAGGGAAGCAGCCTTGATCTCATCCCCACTCCTAAGGCATGTGACATATCCATCCTAGCTACAGATCTGCCTAAAATGTGTATTGATGACAAACAAAAAAGGATTTGTAACTATTAAAAGATGCGTTGTGCCATTAAGGTTAACACTCACTTTTTTTCCTTACTTGTTTTATAATGTTCAGTGTTTTTTCCACTAATTCATTTCTGGTATTTTTTAAGGATGTGGTTTGTGTGCACTTATCTCGTCTCAAATAAAGTGAGGCCGCTGTGAAGCATGGTTTTTGTGGGGGGCGATTTACTAACCAGCTGGAATCTAATGGGTCTCCATGGGGAAGATATCACGAGTATGCCAAATGTGAACACGGCAAATCATTTTTGGGAAAGTTTTAGGGACAATGCAGTCAAGTATTTCAGCAAGCTCAACCGGGAGGTAACACCATTTACAGTACTGTGATTTGTCCAACATTATGAAATATCTATTTGAGTAAACTGAATCCCCTGTACTTGAAATAGGGCCAGGGGGTCTGATCATCAATAAGTCTAAGTCACCCTGCTTCCACAGTTTCTGGGTGACTGGTCTACAATTGTTGTTGTCCCTTTTATTTTCCCAAAGGTTACGTTTGATGTGTTGTCCTGTATATCAAGCCTGTGTCATTCCACatgtatactttttttttaaataatgtaaagAGAAGACATCCTAGAGTCTAGACCAGGGGGCAAAGTACGGCCCGCCGGGCACTTCAATCCGTCCCGCGagaccccttttttctccccaatttcgtggtatccaattggtagttacatcGCTGCAATTCCGGTACAGACTCCCGTACAGGGAgtggcaaaggtcgagagccgtgcgctctccgaaacacgacccagccaagctgcactgcttcttgacacaatgcccgcttaacccggaagccagctgcaccaatgtatCAGAGGAAACGCCGAACACCTGCCGACCtcgtcagcgtgcatgcgcccggcccaccataGGAGTctctagagcacgatgggacaaggaatctcggcctgccaaaccctctcctaacccggacgatgctgggccaattgtgttccgcctcatgggtctcccagtcacggcatgctgtgacacagcctgggatcgaacccgggtctgtagtgacgtctaaTGCacagcaatgcagtgccttagaccgctgcaacaCTCTTGGGAAGCCACCGCAATTTGATTTTAACAAACAATTGGTCCCACAAGAAATGCGTCCCTCCATTGAAATTCAAAATCCCGATGTGGCCCTTGAGCCAAAAAGTTTGCGCACCCCTGGTCTAGACCTTAATTACCAGCCATTGGAAAGAATGAAGGGATTACCATTTTCTCCAACATATGCATtgttgaaataataataatagtcctAATTACTACATTCATATAACCTACAAAGCATATCTAGGTTAATTTACTCTATGGTTTAGTATGTGTGTCCAAAATAACTTTAAATGCCTTATCCCATTTACTTTGTGGAAACTGATAGGGAAACACTGAATGATTCAAATTTGACTGACAAAAACAGCCCCCCCTACACACTCTTTTTATTCACAAATATGCACAGAATTGGAAACTTCTTTGAAAAATGTGGTTGGCGTTGTAAGGCATGAAAAATGTTTTTAGCTTTGATTTCATCTATCTGGTCTTTtctgatcagtgtccaccataGGAAGGAGACAAAGAACCAATTGACGAGAACAGGTTACACTGCCTATTCTATATATGACATGGCTAAAGCTAGTAATTGGTAAGTAATGACATGGTCCTGGTTTGATGATGTAGCACTCCAGCCTGTTCTGTACTGATGTTAACGTGCTAGTCGGAACAAGGAAActcgtaaacttccgacttgctAACTAGTTGTAGTTATACATATGCCGTGTTAAACCAGTTAGCAAATCATACATTTCCGAGTTTCCTAGTTCACCTGTGGTGAGTGAAGGGTCTGTGAccatacacaacaacaacacaattcAAAGTTACTATTTATTTCTGAATTGCTGCTAATGTATATTTGGCTCAATTAAGGAATCCAATGTGTTTCTGAGTTTATCAGTCTCTCAACACCTGGTAATTAATCTGAATGCCAAAAACAATCATGGATGTAAAAATCAACACTAATAATACTAGTAGTGAAATTATGAACATTGATTCTTTGTGTTTTGATATAAAGACATGACTTGTACATATGTAGGACTTGAAAGAGTCCTTCATTTCATCCATCAATGTGTTCAGAAATGAACCTGATGTTTGCTCTAAGGTTTACAATATTGATTGATATATTAAATTGATCAATAAAAAAACTGCTTCTGTTATA

Function

GO: NA

KEGG:

id description
K18311 RIMKLA, NAAGS-II; N-acetylaspartylglutamate/N-acetylaspartylglutamylglutamate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1559106 lncRNA downstream 394 32054609 ~ 32056554 (-) True G1364341
TU1559131 lncRNA downstream 11855 32044591 ~ 32045093 (-) True G1364366
TU1559123 lncRNA downstream 24258 32032351 ~ 32032690 (-) True G1364358
TU1559122 lncRNA downstream 24718 32031894 ~ 32032230 (-) True G1364357
TU1559112 lncRNA downstream 39301 32017413 ~ 32017647 (-) True G1364347
TU1559191 lncRNA upstream 43005 32139138 ~ 32191970 (-) True G1364424
TU1559232 lncRNA upstream 100289 32196422 ~ 32196717 (-) True G1364465
TU1559242 lncRNA upstream 106001 32202134 ~ 32202363 (-) True G1364475
TU1559279 lncRNA upstream 125698 32221831 ~ 32223847 (-) True G1364504
TU1559526 lncRNA upstream 285089 32381222 ~ 32381591 (-) True G1364736
XM_036946723.1 mRNA downstream 67152 31966722 ~ 31989796 (-) False LOC110491820
XM_021565608.2 mRNA downstream 67165 31966999 ~ 31989783 (-) True LOC110491820
XM_021565603.2 mRNA downstream 98946 31950519 ~ 31958002 (-) True ttc34
XM_021565604.2 mRNA downstream 98947 31950519 ~ 31958001 (-) False ttc34
XM_021565602.2 mRNA downstream 328005 31712301 ~ 31728943 (-) True si:ch211-28p3.4
XM_036946725.1 mRNA upstream 134154 32230287 ~ 32301791 (-) False LOC110491825
XM_021565614.2 mRNA upstream 134154 32230287 ~ 32350851 (-) False LOC110491825
XM_021565616.2 mRNA upstream 134154 32230287 ~ 32350851 (-) False LOC110491825
XM_036946726.1 mRNA upstream 134154 32230287 ~ 32350853 (-) True LOC110491825
XM_021565618.2 mRNA upstream 340094 32436227 ~ 32466311 (-) True pigt
TU1559113 other downstream 37450 32018794 ~ 32019498 (-) True G1364348
TU1558829 other downstream 170836 31885749 ~ 31886112 (-) True G1364105
TU1558520 other downstream 406251 31639437 ~ 31650697 (-) True G1363836
TU1556170 other downstream 2131794 29923871 ~ 29925154 (-) True G1361619
TU1555797 other downstream 2559393 29497113 ~ 29497555 (-) True G1361290
TU1559908 other upstream 538332 32634465 ~ 32635511 (-) False G1365099
TU1559909 other upstream 538430 32634563 ~ 32635511 (-) True G1365099
TU1561599 other upstream 1587878 33684011 ~ 33684473 (-) True G1366703
TU1561654 other upstream 1651267 33747400 ~ 33751407 (-) True G1366756
TU1561592 other upstream 1767373 33863506 ~ 33869898 (-) False LOC110491043

Expression Profile