RNA id: XM_021565616.2


Basic Information

Item Value
RNA id XM_021565616.2
length 3696
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110491825
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 32230287 ~ 32350853 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTGCATTGAATGCAGACATCCTCATGCCTTTCGGCTTGGCACACTAAATAAAGCAAATGGAACCTTTGGTACGCAATATACTGTATAGGCTAATCTGTGTGTGCTTTATAATGCAGAGCCCTGCACACTACTACATTGCTAATCTGAAACGCGCAGTTGCAGAAAGGAGAGCGGTTGCCAAGGCAGCCACCAAcctcccctcccccctttctctccattcctctttcccATTTATTATCAGTAGAGGTCGCATGGCATATGGTGAAGAACAGTCCAACCACTTCTCTGTCCTCGAACCATTGCCTGGAATCAATGCATGAATATGCACCTCCGTCACAAAGCCTGTGGAGTATGAGAACAACgggaaaaaacaaacatattcaGAGGGCTCATCTTATGCTTTTTTAAATAAACCAAGGGGGAACATTTTATTTCATTTGTTCTGGAGTATGCCTAACTTAATAGTATAACTAATCTGCATATGTGCTGTTATTTTTGTTCTACCGTTAAGTGATAACTGTTTTGGTTCTCCAAAGCGGACGCGCTCTAGTAAGCGAAAAAAAGGACTGTTCATCACTAGGACGCGAGTTGGTGCAGAAGTTCGACCGCAAACGGATGTGAGGGAAGAGTGCACAGAGTGCACAGAAAACTCAACccctttttatttctttacttcttTCTTATTTTGTTTGGCTAAGCAATAGAGTGAGTCAAAGACACTGAAACGGATTTCATGCCGTCAGTCTCGCAGAACCTGATATGGACGTGAGATTTTATCCTGCGCACCCGTCAAGTGTGGGTTCTGATCCAAGTTGTCTAAGCTCGTTGGACTTTTACCACGCGAACAAGttaatgtcacctctcccggCTATTACTGACAGCTTCTATGACACCTACCACCTATTGACAGTAATAAGCATCCTCAACCACTGAGAACTGACCGACACCGGAAGTTTGGACAGGCCCGGTACGGTGTGGGTGAACGAGGAATTCGGCTCCTCCACGGTACCCCACCCCCAGGCTCCAACCCAGCTGGGAAAAGACTGCCCACTGCTGGGTTTGATGGTGACAACATGTACATGAATGACAATAACCAGGAGTTTCGGTCACCAAGCCAGAACTACTCCAGTCAAGGCCGAGGAAACAACagcggaggaggaggggatgaagACTACGAGATCCCCCCCATCACACCCCCCAACCACGCTGACCCCTCTCTGCTTCACCTCATGGACCCCGAGTCGGGCTACACCTTCCACTCACTGCCCCACAATGGCCTGCTCAACCCCTATTCCTACCCAGAGCTGCCTGCTGCCCTCATGATGTCCAATATGCTGGGCCAGGATAGCCATCTTCTCTCGGGTCATAATATGCACTCGATAGGGGAGAAGCGGCCATCCTCGGAGATGATGAAGCCCAAGCCCAAAccgcagaagaagaagaaaaaaaaggacCCCAACGAGCCATCGAAGCCCGTGTCGGCCTATGCCCTCTTCTTCAGGGACACCCAGGCGGCCATCAAGGGCTCAAACCCCAACGCCACGTTCGGGGATGTGTCCAAGCTAGTGGCCTCCATGTGGGACAGCCTGGGGGAGGAGGCAAAacagGCGTACAAGAGGAAAACCGAAGCAGCCAAGAAAGAGTACCTGAAAGCCCTCGCCACGTACAGAGCCAGTCTCGTTTCCAAGCCCTACAATGACCCTGTCGAACCAAAAAGCTCCCAAAGCAGCCAGCCCTCACACATGCTGCCCCCCAAGCAGCCCCTGTACAGCGTGCCCCCGCAGGCCTCCTCCCCCTACGGTCTGGGCCCTGGCTCCTTCCCCTTGTCGGACCTGCAGAGCTTCGCCGGTCCGCCCCACCACGCCCTGGCCCGGACCCTTAGCCAATCCCAGATGCTGCCGCCCAGCATGAGTgcctcacccccctcccccttccagatcagcccacccctccacccctcccagcTCGCCCTGCACCAGAGTTCCCTGCGCATGCAGCAGGTTCAGTCGCACTCAATGGGGCTCCAGGGGtctctgcactcacctcctctcaGCCAACAGGGTTTCTCTCACATTCAGGATTACCAGAACAGTGTGGGGGGGTCCCAGTCCCCGGGGGCGCCCAACCCAGGGCATGGACAGAACCCAGACTGGGACGGCGAGTACTGCAACCGGGACTGTGGGCCCAACCATTGCAGCAGTGGCATGGGAGCTCGGGACAAGCCTCTCTACCTCACTTGAAGCTGACGGACCTCCAAAAGTCAAGACTCCAGGGAGTTTACAAATGTTCATTAACAACAACGTCAATGTATCTTTCTCCTCCTTGTTTTTTTCTGAAGGATTTTTAAAATCCCAAAGACTGCTACTACTTCACATATTTGCCAAGCACTTAGACTGGACAGGAGCCTTGCTTCCTTTTTCCATGAATGTTCCATTTTGTGGGGGGTTAAGCTTCAAGCTCACGTCAACATACAGTACACGAAGACTAAAAAACGTCTCCTGCCTTTGTTTTGACATTTTCAAAGTGTTTAATTTCTCTCCTATTTTGCTTTTCCTTTCGTCTTTCGTCCTCTCAGTTTTGCCATGTACTGCCCACTTTCGGGAGAAACAATACAGTAAGCATATTCATTGTAGGGGTCTAGGTTAAGATTCAGGACCCTAGAACCTAGTCACTTCACTAAGGGAGGATACAACTATttcagcaaaaataaataaagcaaAAACACAAAGTGAAATTAGAAAAAGACAACATCCTTACGTCAACCCAGCTCCAAATAAGAGCTTCCCCCCTTTTTTTTCAAAGTGATTGTAAATATCTACCAAGATGGAACCTGCCCCCCAAAGCCTAGATGTGTGTATCTAGCCACAATcccttgcttttttttttttttttaaacattattttgtttgGTTATGTGATTTTTGTGCGTGCTGGATTCAGTGAGGGAATACACACACTAAATCTTGTGTTAAAGCTCTGTTCACTGGTCTTGCTACTTTCTAGCCTGTCCTCAGGATGTGACTGGACCGAAGAGGTCAAAGGTGAAACCTCTTCCTTAGTTTAAACCTCTCCTGGTCCAGCGGACAACACCCCCCTACTCCCCAGCACCACTTgtataggtgaaataaaaaaatgttgctAAATGTGAAATGTTACTAAAGATAAAAGCATAACAGTGGGTTTTAAAGTTTTTGACTAGTTTTATTAGGTGTTTTAGAAATTGTGTTGAATTCTTCTTTACacttttttgtgaaaaaaatgtcattcttaaaaaaaaatgtttttcactGTAGCACAATTTCAGTTTATAAGGAATGGTCACTGGTAGATATTTCATTTGTGTACAGACCTGCAAAATGTACTTTTAATTGTAAAGCCAGCGATGAAAGAACCCATTTAGTTTTGTTGAATAACATGTTTATGGACGCAATATGGTCATTCTATTTAATTCGATTGACTGGTTTCACATATTTATGAATGATATGAAGTAACGTTTTGGCTTGTTTTCATCAGggtgcattattattattattattattattattattaaattccATGGTAATTTGAATAACTATTATTTGTACATCACTTCTTGCTGGTGCATTGGCTTTTTGCCAGCATTTGGTTCATTTTGTGTGGCGAtgcttttttttgttttcttttgtcagTAATAAAATGTAAGTGGAAAATaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1559279 lncRNA downstream 6440 32221831 ~ 32223847 (-) True G1364504
TU1559242 lncRNA downstream 27924 32202134 ~ 32202363 (-) True G1364475
TU1559232 lncRNA downstream 33570 32196422 ~ 32196717 (-) True G1364465
TU1559191 lncRNA downstream 38317 32139138 ~ 32191970 (-) True G1364424
TU1559106 lncRNA downstream 173733 32054609 ~ 32056554 (-) True G1364341
TU1559526 lncRNA upstream 30371 32381222 ~ 32381591 (-) True G1364736
TU1559543 lncRNA upstream 41596 32392447 ~ 32392683 (-) True G1364753
TU1559544 lncRNA upstream 42396 32393247 ~ 32393495 (-) True G1364754
TU1559557 lncRNA upstream 48933 32399784 ~ 32401059 (-) True G1364767
TU1559559 lncRNA upstream 50644 32401495 ~ 32401729 (-) True G1364769
XM_021565612.2 mRNA downstream 134154 32056948 ~ 32096133 (-) True LOC110491822
XR_002468909.2 mRNA downstream 143501 32081707 ~ 32086786 (-) True LOC110491823
XM_036946723.1 mRNA downstream 240491 31966722 ~ 31989796 (-) False LOC110491820
XM_021565608.2 mRNA downstream 240504 31966999 ~ 31989783 (-) True LOC110491820
XM_021565603.2 mRNA downstream 272285 31950519 ~ 31958002 (-) True ttc34
XM_021565618.2 mRNA upstream 85376 32436227 ~ 32466311 (-) True pigt
XM_021565621.2 mRNA upstream 267897 32618748 ~ 32628980 (-) True LOC110491830
XM_021565623.2 mRNA upstream 285695 32636546 ~ 32735401 (-) False LOC110491831
XM_021565622.2 mRNA upstream 285695 32636546 ~ 32735446 (-) True LOC110491831
XR_002468911.2 mRNA upstream 617993 32968844 ~ 32970270 (-) True LOC110491834
TU1559113 other downstream 210789 32018794 ~ 32019498 (-) True G1364348
TU1558829 other downstream 344175 31885749 ~ 31886112 (-) True G1364105
TU1558520 other downstream 579590 31639437 ~ 31650697 (-) True G1363836
TU1556170 other downstream 2305133 29923871 ~ 29925154 (-) True G1361619
TU1555797 other downstream 2732732 29497113 ~ 29497555 (-) True G1361290
TU1559908 other upstream 283614 32634465 ~ 32635511 (-) False G1365099
TU1559909 other upstream 283712 32634563 ~ 32635511 (-) True G1365099
TU1561599 other upstream 1333160 33684011 ~ 33684473 (-) True G1366703
TU1561654 other upstream 1396549 33747400 ~ 33751407 (-) True G1366756
TU1561592 other upstream 1512655 33863506 ~ 33869898 (-) False LOC110491043

Expression Profile