RNA id: XM_021564419.2



Basic Information


Item Value
RNA id XM_021564419.2
length 1553
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110491043
representative False

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 33863087 ~ 33870055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGCTGGTGTGCGTCAACGCAGACAGGACATGTGAGGGCAAAGCCCAAGGTTTGTTAGGGGAGGGCCAGTACCTGTGCCTAGGAAAGGGTGGGGTGGGGTCAGCCGTGGGTGCTGTCACCAAGATTAGATCAAGATGGAAATTGAAACAATTTAACAATAGGCTACGGCTGCATTGGAGAAAAGAGATCAAACTCCTGTCAGACCTTGCATACTGTGGTTTAACCACATTCTCAGGGTACCAGATGTAGGGTGAAGAGTATGTCAATATCATCCAGGTGGACCCCACCCTGCGCGGGGCACTGTCCCGTGCCAGACAAGGAGCCCAGGTGTATCTCCACAGCCTGTTTCCCTACCTGCTGGAAAAGTTGCTGGTGTGCCTGGAGAATGAGCTTGGAGACAAGGGAAAAGCCAGGGAGGGGGAGGCCGGAGAGCAGAAGTGGCCAGTCCCTGGAGCCTGGATGAGAGCCTGGGTCCAGAGGGTGGTGGGGCAGCTCACGGAGCCCCAGAGGAGGATGTGCATGCTGGTCTTGTTGGCCCTCCAGCCGGCACTCTCCATCATCCACCGGTTGCATGTGGCCCTGTTTTACATCAGCGGGGCCTTCTACCACCTGGGGAACAAGACGGCCAGCATCCGCTATCTTTGGGTGTGTGACGGGGGTTGACAAGGCCATCCGGAGCAGCTACAGGCTCCTGGGCGTGGTCTCCCTGCTGCAGCTGGCCCTCACTGTGGCCCTGCAGCTCAACAAACTCCGACAGAGAGCCCAGCAGTAGTGGAGACAACACAGGAACCTGCCTTCCAGGTCTCCAGTCTGTAGAAGAGCCCAACTCACCCTGTGCATCTCGCTGTATCCtgtgaatagaggagaggaggcactCAACCTCTACCCCATGTGGCCACTTGTTCTGCTGGGAGTGCATCACAGAGTGGTGTAACACCAAGACAGTGCCCTTTGTGTCGTGAGAAGTTCCAGCCTCCTCGACTGGTCTACCTGAGAAACTACTCGTTTCCAGAACCACTAGCGTGCCTTTTGTTACATGGCTTCACTTTCTAAATGACTGGATCGCCACATTGGACTGTTGAATCGTTAAACACACCTTTGTCTTTCTTAGAGTTTAGCTATCTCTGTTCAAGTTACTTCCAAATAGCATCTCACTTCAGAGAATGCCTAGAAATCTTATTTTGGGACCTTGATTCAGATATTGCTGAAAACTCTGTCAAGTTATCTCCAGTGTGAAACAAAATGGATAAAGCGTTTCAAATTGTTTTTGTAATATTTCAGAATATTATTGTGAAGCTCTGTCCTCAGCTCTTTCATTCTGTATCAGGGATACACACTGGAATCATTTGTGTATATTTTTCGTTCTTTAATATActtgttttatatattttatggGCATGCATAATGCAGTGTACTATATTAAGCAATCATTCATTTTGAAATGGTTTGCATAtgaatcatgtttggattgtatCAGTCTAATTTATCTGAATTAAAAcgtaataaaatataaatcaacTATGCAACTTTTGTAATAAACAACTGTGCAATta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1561663 lncRNA downstream 96984 33765868 ~ 33766103 (-) True G1366765
TU1561660 lncRNA downstream 99336 33763457 ~ 33763751 (-) True G1366762
TU1561659 lncRNA downstream 101491 33761267 ~ 33761596 (-) True G1366761
TU1561658 lncRNA downstream 102814 33760039 ~ 33760273 (-) True G1366760
TU1561657 lncRNA downstream 103180 33759473 ~ 33759907 (-) True G1366759
TU1561771 lncRNA upstream 45202 33915257 ~ 33915565 (-) True G1366861
TU1561773 lncRNA upstream 46996 33917051 ~ 33917355 (-) True G1366863
TU1561777 lncRNA upstream 52857 33922912 ~ 33923113 (-) True G1366867
TU1561790 lncRNA upstream 70387 33940442 ~ 33940747 (-) True G1366880
TU1561792 lncRNA upstream 73179 33943234 ~ 33943449 (-) True G1366882
XM_036945771.1 mRNA downstream 434 33772325 ~ 33862653 (-) True LOC110491843
XM_021565635.2 mRNA downstream 181844 33652657 ~ 33681243 (-) False clcn6
XR_005036508.1 mRNA downstream 331740 33484120 ~ 33531347 (-) True LOC118939523
XM_036945770.1 mRNA downstream 379251 33419422 ~ 33483836 (-) True LOC110491041
XM_036946736.1 mRNA downstream 446592 33371376 ~ 33416495 (-) True LOC118939522
XM_021565658.2 mRNA upstream 477874 34347929 ~ 34429211 (-) True skia
XM_036946744.1 mRNA upstream 584012 34454067 ~ 34527394 (-) False LOC110491852
XM_036946743.1 mRNA upstream 584012 34454067 ~ 34536464 (-) False LOC110491852
XM_036946745.1 mRNA upstream 584012 34454067 ~ 34565408 (-) False LOC110491852
XM_036946747.1 mRNA upstream 584012 34454067 ~ 34566419 (-) False LOC110491852
TU1561654 other downstream 111680 33747400 ~ 33751407 (-) True G1366756
TU1561599 other downstream 178614 33684011 ~ 33684473 (-) True G1366703
TU1559908 other downstream 1227576 32634465 ~ 32635511 (-) False G1365099
TU1559909 other downstream 1227576 32634563 ~ 32635511 (-) True G1365099
TU1559113 other downstream 1843589 32018794 ~ 32019498 (-) True G1364348
TU1563806 other upstream 1208046 35078101 ~ 35079605 (-) True LOC110491862
TU1564246 other upstream 1877921 35747976 ~ 35780436 (-) True G1369101
TU1564253 other upstream 1878802 35748857 ~ 35752941 (-) True G1369107
TU1564061 other upstream 1933013 35803068 ~ 35806188 (-) False LOC110491868
TU1564060 other upstream 2121292 35991347 ~ 35993471 (-) True LOC110491868

Expression Profile