RNA id: XM_021565854.2


Basic Information

Item Value
RNA id XM_021565854.2
length 2207
RNA type mRNA
GC content 0.50
exon number 2
gene id neurod4
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 40209982 ~ 40213414 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATATTCATGCCAGTCGGAGATGAAAGTCCCATCGCGCACTGATTGTATTACTGAGGGAACGAAAAGGAACTTGGAAAGGACTGCTACAGAGCAAAACGGCATCTGTTGAGGATTGGCTATAAAGTCATTTTGCTTGGTACTGGGACTTTTGAAGTTAGCCGGACGTCTGACAAGTTTGGAAGAGCGAGTTGTGGACATAAACAGATCACAATGATGACCAAACGATTTGGTAAGCCTGGAGAAGGAGATGTGTCTGAGCTGGTCAGTTCTCTGGCCTGGCTAGATGAGGACCTGAGCTcccaagatggagagagaggtccagagatGGGGGGCCGCTACGGCCTGGGCCCAGGAGGCCGGGGCAGCGAAGACATGGAGGATCAGGAGGAGGAAGAcaattataatgatgatgatgaggagacTGGAATGGACGGAGAGAACGAGGCGCCCAAACGGAGGGGgcccaagaagaagaagatggcCAGAGGCAGACAGGAGAGGTTCAAGGCGAGACGCACCAAGGCCAACGCCCGCGAGCGGTCCCGCATGCACGGGTTGAACGACGCGTTAGATGTGTTACGTAAGGTCATGCCCTGCGCCTCCAAGACCCAGAAACTGTCCAAGATCGAGACCCTGCGGCTGGCCCGCAACTACATCTGGGCCCTGTCTGAGGTGCTGGAGAGCGGTCAGTCCCCAGAGAGCCACGGCTTCACAGAGATGTTGTGTAAAGGCCTGTCCCAACCCACTAGCAACCTTGTGGCTGGGTGTCTCCAGCTGGGGGCTTCTGCCCCCAAACTGATCAACAAGCTGGATGACAAGCCCTTTGGAGGAGCTCCAGGAGTTGGTAGTGGTGTAGCAGGGCAACCTGGTGGCCATCACCCCCTGAGTGGTCACTACCCCTCTCCGGGCCTGCCTAGCCCCCCCTACGGGTCCCTGGaggcctcccacctcctccataTGAAGAGCTTCGAGGGAGGGCCCTACGAACAGCACCCTTCCCCTAATGAGTGTAGTAGCAATGGCACCCCCCCTTACGACGGGCCCCTCACGCCCCCCCTCAGCATCAGTGGCAACTTTGCCCTGAAGCAGGAACCTTCCCCCCACGAGGCTGAGAGGAACTACCCCTCCCACCCTTCCCATTACCTCTCGTCCCTACCCcactaccccccctcctccctggcCGGGCTGCCAGGGCCTCAGGGCCACCTCTTCCAGGCCTCGCGCTACGAACTGCCCCTAGACATCCAGGCCTTTGAATCCTTCCCTCCACCACACATGGTCGCCTCACAGATGGGCACCATCTACAGCGAGTGAAGAGGAAAGTGAAGTTGGTTGGCCAGGCAGGGGAGAGATCCATACACAGCCCTGCCTCTGGTCCTCCAACCTTTCTGCACATACATAGGCCCGTGACTCTGTGAATGATTGTGTAGAGAGACAATGATATGACATTTACGCTGTCTAGTGTCCTACTCTGGGAGAGCATGGAATGCTCCGAGAGAGAGACTCAACTAAACTCAACCTACCTGGTCATAATGAACTACTGAAGAGACAAAGATGCACCCTTCATTGTATTACTAATTTATTGTCGTTGTTGATTATTATTTGTGTTGACATTATTTGTTTTGTCATAAtttgtttctgtctgtgtaaTAAGTCTTCCCTCAGTTCCTATTATATGTAGCTTGTTTACCAATTACCTATTATATGTATTTGTTTACCAAATCAGATATCCAGGTATAAGCACCGCACACTGTCTCAGAGACACCCATCCATTTTTTTTACTAAAATACAAGAGTACTTGGGCTGAAAGAAAGTCCTCTCTTGTGTGCTTGAGGATGGAGAGAAAATGTGTCAGAAAATGTTGCTCTTACACTCAGTTACTTCAACTTCTGCACTGAGGCCCATACTGTAGCCAGCATCATTTTAGCCATATGAACAGAAATGCATTTAATTTATATCcgtatttaatatttattttgacAACTATTATCCTTTTTGCAATTTTCTCAGCACTGTTTTTGTTTTACTGTCTTCTTGACATATAGCTTGTCGGTCACCGGCGACTTTACTAATGAAGGATTTAAATTATGATTTTTTTCGAAGTACGTTTCAGGATTTTGTCTCTTATGGTGTCCATCACTACTGTTTTTGTAAATATTTAGCTGTTTCGCACTTAATTGAATAAATATTCTTATATTATATACTA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0001839 neural plate morphogenesis biological_process
GO:0071698 olfactory placode development biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K09079 NEUROD4, ATOH3, MATH3; neurogenic differentiation factor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1569286 lncRNA downstream 30794 40176810 ~ 40179188 (-) False G1373637
TU1569287 lncRNA downstream 30794 40176810 ~ 40179188 (-) True G1373637
TU1569269 lncRNA downstream 65732 40144042 ~ 40144250 (-) True G1373621
TU1569268 lncRNA downstream 65979 40143775 ~ 40144003 (-) True G1373620
TU1569265 lncRNA downstream 68645 40141099 ~ 40141337 (-) True G1373617
TU1569305 lncRNA upstream 13626 40227040 ~ 40227440 (-) True G1373655
TU1569306 lncRNA upstream 16039 40229453 ~ 40229709 (-) True G1373656
TU1569336 lncRNA upstream 78558 40291972 ~ 40350960 (-) True G1373685
TU1569343 lncRNA upstream 151143 40364557 ~ 40377173 (-) False G1373689
TU1569342 lncRNA upstream 158934 40372348 ~ 40377173 (-) True G1373689
XM_021565848.2 mRNA downstream 15976 40181926 ~ 40194006 (-) False LOC110491955
XM_021565849.2 mRNA downstream 15976 40181926 ~ 40194006 (-) True LOC110491955
XM_021565851.2 mRNA downstream 17500 40181926 ~ 40192482 (-) False LOC110491955
XM_021565852.2 mRNA downstream 17501 40181926 ~ 40192481 (-) False LOC110491955
XM_021565843.2 mRNA downstream 78574 40121155 ~ 40131408 (-) True LOC110491951
XM_036945855.1 mRNA upstream 24673 40238087 ~ 40239129 (-) False LOC118939474
XR_005036393.1 mRNA upstream 24673 40238087 ~ 40239129 (-) True LOC118939474
XM_021565856.2 mRNA upstream 222644 40436058 ~ 40443364 (-) False LOC110491958
XR_002468933.2 mRNA upstream 222644 40436058 ~ 40443364 (-) False LOC110491958
XM_021565860.2 mRNA upstream 246416 40459830 ~ 40480813 (-) True slc26a10
TU1569212 other downstream 125156 40082457 ~ 40084826 (-) True LOC110491948
TU1569124 other downstream 266954 39940222 ~ 39943028 (-) True G1373490
TU1569001 other downstream 489005 39719864 ~ 39720977 (-) True G1373378
TU1568834 other downstream 674683 39529924 ~ 39535299 (-) True G1373226
TU1568802 other downstream 787130 39422150 ~ 39422852 (-) True G1373200
TU1569967 other upstream 309583 40522997 ~ 40525278 (-) False G1374237
TU1569961 other upstream 309645 40523059 ~ 40525278 (-) False G1374237
TU1569962 other upstream 309680 40523094 ~ 40525278 (-) False G1374237
TU1570054 other upstream 639344 40852758 ~ 40854589 (-) True rps26
TU1570242 other upstream 813361 41026775 ~ 41029406 (-) True G1374491

Expression Profile