RNA id: XM_036946876.1


Basic Information

Item Value
RNA id XM_036946876.1
length 5844
RNA type mRNA
GC content 0.51
exon number 16
gene id arhgef25a
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 40527927 ~ 40656367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagacagacggaAAGAGGGAGGATAGGTTTGGGGATGGGGAGGTGATCATGGACAGCCAATGACAACAAGGCAGGAGAATGTTGAGGTaaaagaagaaaagagaagaagaaaaagggaAGAGAAGGTAAAAAGAGAATGCCTCAGGGCAGTACATCTCAGCGTGGACCTAACAGTACACTCCCTGTCCACTGAATTAaccagaggaggaagggggaaagATAGATTTTCTGGACAGAATAAAAGAGAGGGGGATCCGGTGgtcagaggaaaagagagagggatctACTGAACAGAGGAAAAAGCCACttgggagaggaaaagaggaagggATCCATTTGGCaaaggaaaagggagagagtgaaggatcTACTGAATAGAGGGGGGAAAAAAGGGAAGGATGTTTATCCAGAGGGAACCCTGTATAGAGGGGACTAGGTGACCTGAAGAAGAGACACTGTGAGccaccacctgtgtgtgtgtatgtgtgtttgtgtgtgtgaggacaggaCTGCGCTCATCCCAGCAAGCCTGGGCACACTCTTAGTCCCAGGCAGCATGTGTGttttgtgcgtgtgtgagtgttcCAGCCAGGCACGCTCCAGACAACATGttctcctattcaaaatgtaattgTTTATGTGTATGCAAGATCCTCTGACTCACGCTCAGTGTGTGTAGGtacgtgtgtggtgtgtgtgtctgagtgagtgtgtttattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagttcctgTGGCTCAGACCAGGCCAGGACGAGACAAGGCAGCGGCTCTAAACTCTGGCACCGTGCTTTGTAGGAGGAGAGGTGAAGGagggaacagacagagagaaggaacagtggagaggagggggagagaaacagggagaggaggagtgacagactgtggaggaaaggaggaggaggaaaaaccGTGGTGAACTGAGGAAAGGAAGAACGGCAACAACAAACAGAGGGAGGACTTACAGGAGGAGAAAGTGAgaaaggaagaaggagagagagcaaagTAGAAAAGGAGAGGTTTTTGAGGGAAGAATGAAGGCGCTTCAGAAGAACCAGGGGCGGACAGACCAGATGCTGGGTGCTATGGCTGACATGCTGACTTCCTTGGCATTGCCCAATCAACAGTGGCCCGCAGAGAACAATGACGCAGCAACAGAGCCCCCGGTGAGCcaggaggagaagaagggggCAGGAGGCCCACGACACTTGGACCCAGCTGGGCTAGAGGACTGGGAGCAGGGGTCCCCCACACAAGAccacctggagaggagaggaggaagagacagagcagactcaTACTCAGCGGCGGGCAGCGAGGGTAGCATCTCCACCTCCGTGGCGTCCCTGCCCCCGACCCTGACGGCGTCCATTAGCTCCGCCCCCAACTCCCCGGGCTCGCGGCGTTCCGTCAGCACCCTGAAGAGGTGGCTGACCAATCCCGTCCGCAAGCTGAGCGCCGGGGCCGTCAACATCACCACCAGCGCCAAGGGGGAGCGGCAGGACAGGAAGTTGGATGGGGGAAGCAAGCCCCCTCCGCCTATTCCACCCCCACGCCACAGTCATGGCCTGGGCCTGGGCCTGGGAGGGCTGGGGCTGGCCAGCCCCCTGGGATCAGAGGACCACCTCACCACTGTACtacccatcacacacacagagatgGAACCCACCAATGTCTATCCAGATGACAACGGCTCAGTGTTGACGGACGACACCTCCAGCCAATCATCAGCCGCAGCCgacaatgaggagaggaggagtgcctTAGAGAAGAGCATGTACGTACTGAAGGAACTCATAGAGACAGAGAAACTGTATGTGGAAGACCTGAGGTACATAGTAGAGGGCTACATGGCCACTATGAATACCAAGGGCATACCTGAGGACATGAAGGGGAAAGACAAGATTATATTTGGAAACATTCACCAAATGTTCGACTGGCATAAAGActacTTCCTGGGGGAACTGGAGAAGTGTATAGCAGAACCAGAGAGACTGGCTCAACTTTTCATAAAGCATGAGAGGCGTCTCCATATGTATGTGGTGTATTGTCAGAACAAACCCAAGTCAGAGCACATCGTCTCCGAGTACATCGAGACTTACTTTGAGGAGCTGAGGCAACATCTGGGTCACAGGCTACAGCTGAACGACCTGCTGATCAAACCAGTCCAGAGGATTATGAAGTACCAGCTGCTgctcaagGACTTCCTCAAGTATTACACCAAAGCCGGGATGGACACAGAAGAGCTCGAGAAAGCGGTAGAGGTGATGTGCTTTGTGCCCAAACGCTGTAACGACATGATGAACGTGGGACGACTGCAGGGCTTCGAGGGTAAGATCACGGCGCAGGGGAAGCTGCTCCAGCAAGACACTTTCACAGTGGCGGAACAGGACAGCAGCTTCCTGTCCAGAGCCAAGGAAAGGCGGGTCTTCCTGTTTGAACAGCTGGTCATCTTCAGCGAGCCAATCGACAGGAAGAAAGGATTCTCACTTCCTGGTTACACCTTCAAGAGCAGCATCAAGGTGAGCTGTCTGGGGGTCGAGGCTCCGGTGGAGGGGGAGGTGGGCCGATTGGTGCTGACCTCACGGGGGGCTGACGGGACTGTGGTGAGATACGTGCTGCAGGCCGCCTCCCCAGAGGTCTGCACGGCCTGGGTCAACGATGTGGGACAGATCCTGGAGAACCAGAGGAACTTCCTCAACGCCCTCCAGTCTCCCATCGAGTACCAGCGCAGAGAGGGAACCAACAAGTCTAACAGCCTGGGCCGGAGCATGAGAGCCCCCCTGTCTTCGGCCAGCAGTCCCCTGCGCCCCCACTCCTCGGCCTCCATCGACCGCCAGCGCCTGCCCTGGCTCCGGTCCTACAAcacctccctccccaccctctaCCTGCCCAGCCAGGGGGGTCAGGGAATTGGCCTCCAGGGCCCCGCTGAGACACACACTCCCCGGGAGtctCCTCTGGTCAGTAGGAACTCGCAGACAACAGTCTCGCCATCTCACGTCCAGCTGGCTTTCACTGACCCGTCTGGTCTGTCTCACTACTCTCAGACCCAGACCTCCCTGCAGTGCCAAGCGGGGTCCAGCGGGCTGCGTAGCACACAGcAGAGCGCAGGAGAGGGCTGCAGTACCAGGGGCCTGCCTGGTGAGGCTGTACCTCctcctggatctgtctctggtCCATTGGCCGGCAAGCGCTCCAGCAACCTGGCCCAGCTCAATGAAGATGACCTATGAACCCTGACCCCTAGGAGGAAGGAGGTTCACGGACCACCACAGctacagagagaaaggaggagggccTCCTCTAGGCTTACCATATGTTGATGCTATCGTTAACTTAAGGGTCCTTTTGAAGGTGGATGGGGTGCTTCTGTAAGGTGCAAGGACTGGATGGAGACTCCTCTTCTGGACTGTTGCTACTGCTTTTTCAGACTGTTACCCGGCGGTTCACCGACAGTCTGAGAGACATAAACCATGGTTCTAACGGAATATACAGTATACGCCTTTCATCTGATTCTTCTGAGCGATGTGATTTGAGGTTGAAGACGTGCCTCTGCGTGGCACCACTAATGGGTGGCACCCAGCTAGATGTTGCAATGGCTGAGGTTACGAAGGATACTCAATGGACATTAGGTATTATGAGGACTTTGCTTGTTTTATTATGAGGACTTTGCTTGTTTCATTATGAGGACTTTGCTTGTTTCATTATGAGGACTTTGCTTGTTTCCTTTTCCATTTTGGAGAAtttctatacagtatatattgtgCTGTCTGTCAGAGGGCTGTGGGATTTGTtcaaaggaagaaaaaaaatgtccATTCCTGATTGGGGAGGTCACTGGagaagtgtctgtgtgtgagtgcgcACGCTgcaggcatgtgtgtgtgcgtatgtgcgcaacatgcgtctgtgtgtgcatgtgtgggtgaaatgcgtctgtgtgtgtgtaaatatgtgcgtaaattgtgtgttttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgttttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtacagGATTGGCGGCTTCTCTTCTTGTAAACAAACATGGATCTGAGGAGCTCTACTTTTCATTCGACTTTCTTTCTACTTTTCTCTCACACTGCTGGATTCTTCCGACAACTACTTCTATTCTCAGGCTGTTTAAAACATGAAGTCATTCCTCCACTGAGCGTATACAGTGCGTTACTCTCTGTAGAcactgaggagagaggacgggataACAGCAAATGCATTTGATCTGTATATATGTGGAACATTGGATTCATCTCTCATGGAACAGAATGGTTCTTACCGCAGAGAGTGTTTCCGGTGGATGAGAACGAGAGAACTCTCCCATGTTCTCTTATTCTGTTTGACCCGAAGTGGTCTCTTGTTTGATCTGGAGATTCCAGACTAAAAAGGAGTGAGGGAGCCCCCTGGAGACACTCTACAGGCATGACGTCACTCTACTGTCACTTCAGACTTAATGGTATTTTCTTTGATTCCTTCTCTGCTCccaccctttctctgtctctttctctaaaAGTCAGAGGGAAGTGAGGACATGATTACGGTGGGAGagaagagacggggagaggaTGGGTGGAGAGGACACAAGGAATCGAGGAAAAACTCATTGAGATGTGGCGGGAGTGGTGGCCATGCCATAGCCAGCCTGACGAGAACGCTAGGGGACGGAGACCGGCTGGTATTTCAAACATATGTTTTCTTGACGACAGGAGACATGAAGGGGTGGTATTGAAATGTGGTATGGTGTCACACAGTCTGTCACTGAAGTCCCATGGCGATGTGCCACAGCCTTCTGCTGTATCCAATGATCTCTGCTGGCTCTCGCTACTCCAGCACGTTAGTACACGCAATACACCTGGCTCAGGCTTACATCTCTGGTTCTTTCGCTACTCCAGCACGTTAGTACACGCCATACACCTGGCTCAGGCTTACATCTCTGGTTCTTAGATAAAGGACAGCAGTTTAGAGACAGTTAACTACTTGGGTTGTTGTATCAGTTGACACTGTGGATATCAAGTGCTTCATCTGCATGCTCTGTGCTCATCAAAGTGAGACTTTTGCCAAAGGCGGGTGCTTTTAGTACTTCATGTACTTCGGTTCATACTGCTACTCTAATATATTGCcaactgttgtttttttttttttttacacatcaaAAATCAAATACATGTAGTTGTGATTTGTTTACTTCAATGCCCGACCTTTCATCTTCTGaatagaacaacaacaacaaaaacgactGTAAAACGAGAAGAGATAGAAGAGATGATTTCAGCTCTTGGTGAATTCTTCTCTGTAACCAGTAGAGGTCAGTGTAAGGCTTTCAAATACAGATGGCAGTCATTGGAGATTAGACAGCTGCATCAACGATCAATGTCTTCAAGTTACAATGCCCCCTCGAGCTAAATCTGTTTAAAATATCTCAATTACAGTGACTGTTTAAATTCAGAACATAAAAGTTTGGTCCCGAAAACTCCATCTCAACTCCCCAGTGCTCGTGGACTAAGGGGTGCTGTTTGTAAATTGGACGTCATAGTGACGATTATTGCTCTGGCATTTTGTGCATGTTACTTAAATATGAAGAATACCCCTACAGAAATGAAGATAACTAAATAAAAAGAGCAGGATAAGGGCTATAATGATGCCATGTTTGACTGAATAGAATCGGTTGTATTATATCAAATAAAAAGTATTTGAATTAAGAA

Function

GO: NA

KEGG:

id description
K20690 ARHGEF25; Rho guanine nucleotide exchange factor 25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1569963 lncRNA downstream 2649 40523824 ~ 40525278 (-) True G1374237
TU1569960 lncRNA downstream 5446 40522079 ~ 40522481 (-) True G1374236
TU1569955 lncRNA downstream 19483 40507927 ~ 40508444 (-) True G1374231
TU1569954 lncRNA downstream 20114 40507612 ~ 40507813 (-) True G1374230
TU1569913 lncRNA downstream 84735 40440934 ~ 40443192 (-) True LOC110491958
TU1570062 lncRNA upstream 130860 40787227 ~ 40788901 (-) True G1374320
TU1570067 lncRNA upstream 188031 40844398 ~ 40845412 (-) True G1374325
TU1570070 lncRNA upstream 194909 40851276 ~ 40851729 (-) True G1374328
TU1570148 lncRNA upstream 208058 40864425 ~ 40864710 (-) True G1374406
TU1570156 lncRNA upstream 228469 40884836 ~ 40885048 (-) True G1374414
XM_021565860.2 mRNA downstream 47114 40459830 ~ 40480813 (-) True slc26a10
XM_021565856.2 mRNA downstream 84563 40436058 ~ 40443364 (-) False LOC110491958
XR_002468933.2 mRNA downstream 84563 40436058 ~ 40443364 (-) False LOC110491958
XM_036945855.1 mRNA downstream 288798 40238087 ~ 40239129 (-) False LOC118939474
XM_021565866.2 mRNA upstream 69149 40725516 ~ 40766238 (-) False kmt2d
XM_021565865.2 mRNA upstream 69149 40725516 ~ 40769515 (-) False kmt2d
XM_021565867.2 mRNA upstream 69149 40725516 ~ 40769515 (-) False kmt2d
XM_021565868.2 mRNA upstream 69149 40725516 ~ 40769515 (-) True kmt2d
XM_021565875.2 mRNA upstream 116626 40772993 ~ 40778946 (-) True dhh
TU1569967 other downstream 2649 40522997 ~ 40525278 (-) False G1374237
TU1569961 other downstream 2649 40523059 ~ 40525278 (-) False G1374237
TU1569962 other downstream 2649 40523094 ~ 40525278 (-) False G1374237
TU1569212 other downstream 443101 40082457 ~ 40084826 (-) True LOC110491948
TU1569124 other downstream 584899 39940222 ~ 39943028 (-) True G1373490
TU1570054 other upstream 196391 40852758 ~ 40854589 (-) True rps26
TU1570242 other upstream 370408 41026775 ~ 41029406 (-) True G1374491
TU1571388 other upstream 1007381 41663748 ~ 41664049 (-) True G1375495
TU1571475 other upstream 1198413 41854780 ~ 41855361 (-) True LOC110492013
TU1572034 other upstream 1897192 42553559 ~ 42569326 (-) True LOC110492054

Expression Profile