RNA id: XM_021565897.2


Basic Information

Item Value
RNA id XM_021565897.2
length 3135
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110491987
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41262830 ~ 41278997 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaaaggaaggagggagagagtgacagtAGAGTGAATTAACAGGGGACATATAGTGAGATGAGATGCACCCCTTTAACCAAACAGACACAACCGAAGTTGAGAGAGGACACCAGGAGCGAGTCCCATTTATTTCAGTTACCTGAAAACGTTATTGATGTGGGAGTGGTGGATTGGTGTATTATTGGGTGTGTCTAGCCTGGCTAAATTCAGTTCATTTTCGGAGATGCTGATGGGGCTGTGTATTCTTGGGATTTCAGAAAATCACTTGTTTGTTCTCGGCTTGTGACACTCAAATCCGCTGAACCAAGCAACTCACTAGTCTAGTAGCCTAGAGTTCTTCAGAGCGCAGAACGGATTCCGGTAGCTTCCGAGAAAATCTCTCCTGCACACCTGAGACAATTAGACATAACTGTTCTGCATAGCATACAGCTGGACATAACTGTGCTTACAGTATACGACGGAAGTTTCAGTCGTTTGGCAGATCAATACGATTGTCTTCAACCGCGCGCTCGTTCTATGGGTCAGTTATCCACGCACAACTAGTTCTCGACTCCTACCTGTCTCCACTTGAGTATTGATCCTGCAGCTATATATCGAAAAGTCAGCATCGTTCACCACAGCAAACAAAAGACACATCAAGAAACATGGACACTCCAGGTGGAGGTGTTATTCTGTATGCGCGCTCCTCCGGCAGCCCCAGCCCTGGCAGCCCGTCCAGTGGGTACCAGACCCagtccccctcctccaccctctcccagCCCTCCTCCCCAGAGGAAATCACCTTCACAGAACTCGGGCCCCTGGGGTCCCTGAAGggccagagagggggaggatgcacacctccatcatcctccaagcTGGTGTTCCACTTCCCAGAAGTCTACAATGTGGCTACATCAACGTCCACAAACCAGCACTCGTACCAACACCCCATCGCTGGGAAAAGGCCTAGTGGATTCACAGGACCTTTCACCAagactGGCGGTATGGTGCTcctgtgtacagtgtgtggagACATTGCATCTGGGTTCCACTACGGAGTGCACGCCTGTGAGGGTTGCAAGGGCTTCTTCCGTCGCAGCATTCAGCAAAACATCAACTACAAGATGTGTGTGAAGAACGAGAACTGCCTCATTATGAGAATGAACCGCAACCGCTGCCAACACTGTCGCTTCAAGAAATGCCTCTCCGTGGGCATGTCCAGAGATGCTGTGCGTTTTGGCCGTATCCCtaagagggagaagcagaggctTCTGGATGAGATGCAAAGCTACATGAACAGCCTGAATGAGTCTGCCACCATGGACATAGAGTCCTCCCCCGTCTCCGAAGCCCCTCCAAGCCCAGCAGAGGTTCCTTCTAAAGAGGCCATCAGAGCCATCTCGCGGGCCTATCAGGACATCTCTTCCAGCAGCCAAGACAGGGCAGCCAAGAGTGAACTCAACATCACCAACTTACCAACAACATCTCTGTTCAAGAGCAACACATCTCAGGAGACCAGCTACACCAATGGCTCTTCCCACCTCGGCTCTGACTCCACCCAGGGGTACCAGTCCTGTCCTGCAGGCCTTGCCCCTCACTGCCCAGACACCAATGACAACCACCATACGTTCCCCTCTGTGGACAAAAGTCGCTATAGTTGCCCAGCTACTTTGTCCAATCATGACCACGGACAGTCTAATGTGGGCACAACTCAACGGGGCAGCTCGGCCAATCACAACAGTTTCTCCATGAAGGAAGAGACCCAAGAGCCGCAAACTCAGACATCCTGTCCATGGAAATTAGCCGCTGGAACCAAAGTGCTGgCCTGTCCTCTCAATGCGTGTCCTGTATCTGCGGCCAGTCGTTCTGGACAGCAGATATGGGAGTCTTTCTCCCAGTGTTTCACCCCGGCAGTGAGGGAAGTGGTGGAGTTTGCTAAGGGTATCCCTGGCTTCCAGGAGCTCAGCCAGCACGACCAGGTCATGCTGCTCAAATCAGGCACCTTCCAGGTGTTGATGGTGAGGTTTTGTACAATGTTTAACCCTGAGGAGCGGACGGTGACCTTCCTGAATGGCCAGACGTACCCTCTGTCCACCCTGCGGGCGCTGGGGATGGGGGCGCTGCTCGACGCCATCTTTGACTTCAGTGAGAAGCTGGGAACTCTGAGGCTGGAGCCTGATGAGATGGCTCTGTTCATGGCTGTGGTGCTGGTCTCTGCAGACCTTTCTGGCATCGTTGATATGGGGGCAGTAGAACAGCTCCAGGAGGGGTTAATCCGTGCCCTGCATTCCCTCATCCACTGCCGTCGTCCCGACGAGAGCGTGTCCATCTTCCCCAAGCTGCTCCTGCACTTGCCCGACCTGCGCACCCTCAACAACCTGCACTCCGACAAGCTGCTGGCCTTCCGGATTGACTCGTGAAcagccctgaacacacacacacacacacatagcaatTCAGAACTCGCCGACCACCACCACTCTCTCAGGGCAAGACTTCCCAGGAGATTGAGGAACACTGACTTGGGCaatcaaacaacaacaacaaaaatgttcaAGGTGCATGTTTGAAAAAGGACAATAATTAATATATTGATCTCCATCCTGttttcatgcacacacacacacacaaccacacatggAGAAAGATAGTCTGTTAGAACGTACATCAGTGTTTTAGGCTTACCGTTACCCTTTTGGACAGATGTGTATGGCAGTTTACCCGTTGTTTTCCAGTCTTTAAGAGACCAAAAGTCTAATCCTAATCTCCCGACCATTGCCAAACCACAGttgagagagaatcagagaggaagatgtttgTGGACAATGATAAGTTTAGGGACCATTATTGGTGACTGAATGTGTGGGTGTTTAGTGTTTGTATAAGAGAAAGGGACCCTGTATATAATAATACATACAATTTACACTTAAGTTCATATGACTCCCATTTCACTTATAAACACATCTGGGGTTTAAATATACAATTAAGACTCAAATATATTCAACAGACAAATTGCATATAGAAATGCGATATTCTGTATATtggcaaatcaaattgtatttgtcacattcacatgtttagcagatgttattgcaggtgtagagaaatgcttgtgtttctagctccaacagtgcagtaatatctaacaatac

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0007165 signal transduction biological_process
GO:0038023 signaling receptor activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1570471 lncRNA downstream 3455 41257403 ~ 41259375 (-) True G1374704
TU1570438 lncRNA downstream 21044 41185859 ~ 41241786 (-) True G1374672
TU1570437 lncRNA downstream 21658 41184380 ~ 41241172 (-) True G1374671
TU1570156 lncRNA downstream 377782 40884836 ~ 40885048 (-) True G1374414
TU1570148 lncRNA downstream 398120 40864425 ~ 40864710 (-) True G1374406
TU1570530 lncRNA upstream 38183 41317180 ~ 41318652 (-) False G1374755
TU1570531 lncRNA upstream 38183 41317180 ~ 41318652 (-) True G1374755
TU1570569 lncRNA upstream 84936 41363933 ~ 41400154 (-) True G1374790
TU1570632 lncRNA upstream 177389 41456386 ~ 41456611 (-) True G1374850
TU1571270 lncRNA upstream 202880 41481877 ~ 41482286 (-) True G1375395
XM_021565898.2 mRNA downstream 9047 41249937 ~ 41253783 (-) True mfsd5
XM_036946901.1 mRNA downstream 9486 41249937 ~ 41253344 (-) False mfsd5
XM_036946900.1 mRNA downstream 9690 41249937 ~ 41253140 (-) False mfsd5
XM_021565901.2 mRNA downstream 14791 41242965 ~ 41248039 (-) True LOC110491989
XM_021565900.2 mRNA downstream 14793 41242965 ~ 41248037 (-) False LOC110491989
XM_036946910.1 mRNA upstream 106589 41385586 ~ 41395379 (-) False calcoco1a
XM_036946909.1 mRNA upstream 106589 41385586 ~ 41395668 (-) True calcoco1a
XM_036946915.1 mRNA upstream 358840 41637837 ~ 41645221 (-) True cbx5
XM_021565933.2 mRNA upstream 370200 41649197 ~ 41657737 (-) True nfe2
XM_021565946.2 mRNA upstream 409249 41688246 ~ 41696948 (-) False znf740b
TU1570242 other downstream 233424 41026775 ~ 41029406 (-) True G1374491
TU1570054 other downstream 408241 40852758 ~ 40854589 (-) True rps26
TU1569967 other downstream 737552 40522997 ~ 40525278 (-) False G1374237
TU1571388 other upstream 384751 41663748 ~ 41664049 (-) True G1375495
TU1571475 other upstream 575783 41854780 ~ 41855361 (-) True LOC110492013
TU1572034 other upstream 1274562 42553559 ~ 42569326 (-) True LOC110492054
TU1572237 other upstream 1493309 42772306 ~ 42773296 (-) True LOC110492059
TU1572712 other upstream 1839891 43118888 ~ 43124166 (-) True LOC110491060

Expression Profile