RNA id: XM_036946909.1


Basic Information

Item Value
RNA id XM_036946909.1
length 2328
RNA type mRNA
GC content 0.58
exon number 15
gene id calcoco1a
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41385586 ~ 41395668 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGGTTGTAGTTTTCCTTCTATAATTTCTAGCTTCAGATCTGTGCTTCATCCAGCTATAAAGAACAGCAGTTCCCATAATACAGCAAAACACACCACCACTGTGATGCGTGTGTTTTTGTTATTGTTGTAGGTTAGTGGAACAGCTGAGAGCGAAGAGACGTCATTGTGCATCTTTAAAAAAACGTTTAATCGTTTTCTGACACGGATGGACTTTGTCTGCCTTTAATCTAAATAGGGACGGATCAATTGGACAATCTGCAGAGCAAACAGACCAGAATAAGGTACTCACCAGTGTTATTGTGTTGCCATGGAGAAGGCTTGGAGGGTGGAGTTTAGGAACGTGGGTAGTAGCTACTTCCCTCAGAGCCGCGTGGAATGCCACTACAGCATCAGCTCGCAACATACCTGGGCCAGCCATGACTGGGTCGGACTCTTCAAGGTGGGATGGTTGTCAGTGAAGGACTACCACACCTTTGTTTGGGCCCTGGCCCCGGAAGGCTACCAGGAGGGCACAGATGTCAACTGCTGTGTTAACTTCCAGGCCTCCTATCTGCCCAAGTCCAGTTCCCAGCAGTACCAGTTTGTGTACGTGGATGGGAAGGGAGAGGTGTGCTCTGCCAGCTCCCAGTTTACCTTCAGCGCCCCTAAACCTTTGGAGGACCTGGTCACCTTGGAGGAAGGAGCCCacggagaggagggggggaccgACATGCTTCTGGTCGTACCCAGGGCCGAGCTACTGCAGagtCGCCTGCAAGAGTGTCTTCGGGAGCGAGCCGAGCTGCTCCATGCACGCGAGGCAGCcgagaggatgaaggagagagagagggagaagtacaGGAGGGCAAGAGAGGCGTGGGACAGAGGCTGCGAGGAGCTGGAGAGGAACATTGCGGACCTGAAGGAAGAGCTGCGAGAAAGCAGAGATAGggtggaagagatggagaggaggcaggagGAGGTGGAGGCATCAGGAGAGGCCTTGGCTCAAGAGAAGAGCTCCATACTGACTATGAAAGCAGCCAGCGAACAGCGAATCAGAGAGCTGGAGGATGACATTAAAGCCCTGGCACTGAAGGCCTTGGAACGAGAGACTGAACTAGAGAGGATGAAGGAGAGGGCCAAGAAGCAAGCAGTtcaaaggagggaggaggagaaagagaggaaagttCTGCAGCTCAAGCTGGAGCAGTCCGAGGGGGAGCTGCGCAGTCTGTCTGCTGAGTTCCAGGGTCTGAGGAGCTCCctggcccagagagacacacacgccCTACAGCTACGGGACACCATCACCACCCTCACATACAGGCTGAGTACGGCGCAGCGGAAAGAGGCGGAGAGCGAGGCCGCCCTGGCTGAGATGCGGGGCCTGCGGGAGCGTCTGGGGGCCAGCGAGCGTTGTGCCGAGGGCCTGAAGGGAGAGCTGTGTGCCCTGGTGGCCCAGAGGGACCAGGGCCAGACAGAGctgcaccaggccaggctccaagCGGCACAGCTCACCCTGCAGCTAGCCGACGCCAGCCTGGCCCTGAGGGAGGCCAGAGCACACTGGGCCCAGGAGAGACAGAGCCTGCAGTGCAGCACTGAGAAGGCCAGAGAGCGTCTGGAGAAGCTGAATGGAGAGACGCAACGGATAGAGAAGAAGCtccaggaggagaggatggagagagagaaggtggaagTGGAGCTGGGAAGAGAGAAGGACTGCAACCGGGTGCAGCTGGGTGAGACATGCAGGGAGCTCCAGgagctgaaggccagtctgaggGTGGCCCAGAAGGAGAAGGAGCAGCTGCTGCTGGAGCAACAGGACCTGATGGAGTACATGGGTCAGGTGGAACAGAGGAGGGAGGCTTTGGCAGATGCCAAGTGGAGCGCTGCGTTGTTCGCCTCCACCAgcCTCCATGACAGTCCTCTGTCTGACTCTGAGGATGAGAACCCTGAGGCCCTGCAGCCCTCCCGCCAACCCTGCAGGcagccccccccctcctcccgccCCCTTGCCCACTACAGCCTGTGTGACCCCCAGGCCCagcctgactccctgctcccctccacccccccttcctcccccagaGACATGTCCCGGTCCCTGTCCCGAGGGGGCGTCGTCATCAGCCAGCCCGCTCCCCTGTTGTTGCCCAGGCAATCGGGCGGAGACACCCTAACACACAGCTCTGAGTCGgAGGAGGAGAATAACACCGACCAGTGCGGAGGACACAGCTCTGGAGAGGAGGCAGCCCTGCTGCTGCCTGAGACCACAGACACAGTCCTCAGTGACCTGGCTAATACCTCTCAGTGGTAGAGAGCGGAGATACAGGACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1570530 lncRNA downstream 66934 41317180 ~ 41318652 (-) False G1374755
TU1570531 lncRNA downstream 66934 41317180 ~ 41318652 (-) True G1374755
TU1570471 lncRNA downstream 126211 41257403 ~ 41259375 (-) True G1374704
TU1570438 lncRNA downstream 143800 41185859 ~ 41241786 (-) True G1374672
TU1570437 lncRNA downstream 144414 41184380 ~ 41241172 (-) True G1374671
TU1570632 lncRNA upstream 60718 41456386 ~ 41456611 (-) True G1374850
TU1571270 lncRNA upstream 86209 41481877 ~ 41482286 (-) True G1375395
TU1571271 lncRNA upstream 93334 41489002 ~ 41494077 (-) True G1375396
TU1571372 lncRNA upstream 214449 41610117 ~ 41610357 (-) True G1375479
TU1571405 lncRNA upstream 333921 41729589 ~ 41733339 (-) True spryd3
XM_021565897.2 mRNA downstream 106589 41262830 ~ 41278997 (-) True LOC110491987
XM_021565898.2 mRNA downstream 131803 41249937 ~ 41253783 (-) True mfsd5
XM_036946901.1 mRNA downstream 132242 41249937 ~ 41253344 (-) False mfsd5
XM_036946900.1 mRNA downstream 132446 41249937 ~ 41253140 (-) False mfsd5
XM_021565901.2 mRNA downstream 137547 41242965 ~ 41248039 (-) True LOC110491989
XM_036946915.1 mRNA upstream 242169 41637837 ~ 41645221 (-) True cbx5
XM_021565933.2 mRNA upstream 253529 41649197 ~ 41657737 (-) True nfe2
XM_021565946.2 mRNA upstream 292578 41688246 ~ 41696948 (-) False znf740b
XM_021565945.2 mRNA upstream 292578 41688246 ~ 41697149 (-) False znf740b
XM_021565947.2 mRNA upstream 292578 41688246 ~ 41697150 (-) False znf740b
TU1570242 other downstream 356180 41026775 ~ 41029406 (-) True G1374491
TU1570054 other downstream 530997 40852758 ~ 40854589 (-) True rps26
TU1569967 other downstream 860308 40522997 ~ 40525278 (-) False G1374237
TU1571388 other upstream 268080 41663748 ~ 41664049 (-) True G1375495
TU1571475 other upstream 459112 41854780 ~ 41855361 (-) True LOC110492013
TU1572034 other upstream 1157891 42553559 ~ 42569326 (-) True LOC110492054
TU1572237 other upstream 1376638 42772306 ~ 42773296 (-) True LOC110492059
TU1572712 other upstream 1723220 43118888 ~ 43124166 (-) True LOC110491060

Expression Profile