RNA id: XM_036946915.1


Basic Information

Item Value
RNA id XM_036946915.1
length 3860
RNA type mRNA
GC content 0.42
exon number 6
gene id cbx5
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41637837 ~ 41645221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTGTGGGCTTACGTTTTATCAAAACGTTATGTAGACGTCACttcaattccattccattcccAGGCTAGTCTGTGTAAATTTAAACAAATAGGCTATTTGATAGAAGTAATTCCAAAAAATACGTCCGCATATTTCCTAAGTGAACATAGCTACAACATTTACTGATTAACTCCTAGTTATCTGGCTTGACGGTTTCGTGATCGTGCACGGTCTGCCATTGTGCATTTTGGCGCTCGCTTTCTCGCACGGCGAGGCAAACAAGCAAGTCGTTTGGGGAGGGGAAACGAAAAGCCCAGCAACAGCGTCAAGAAAACGAACCAGTAAACCGCTAAAGCTAGCACGGGTTTTATTTCAAACTTTCCATTTCCAAGTTGGGACGTGCCCCTTGTTCACTCATTTGAGGTACCGCTACCAAATCATGGGAAAGAAGACTCGTGAAAATGATGATGATGCCTCGGGCTCATCTTCAGAAGAGGAAGAATTTATTGTGGAGAAGGTTCTGGACAGAAGGACGGTGAAGGGCCGAGTTGAATTCTTCCTTAAGTGGAAAGGTTATTCAGAAAAACACAACACATGGGAGCCAGAGAAGAATCTTGGCTGCCCCGAGCTCATTGCTGAGTTTATGAAGACTTACAAGAAGCCTAGCGGCGGTGCCACCCCCAGCAGCGGAGGAGCCAAGTCCAGTGCGGGATCATCAGGTCGTAGCAAGGAAGGCAGCAGCAAGAGGAGAAACTCTGACGATGATGAGGAGGGGAGCAGCAACAAGCCCAAACGGAAAAAAGAGGATGACGTCCTGATTGCGAGAGGCTTTGAGAGAGGTCTGGAACCAGAGAAGATTATTGGAGCCACAGACTCCTGTGGAGACCTCATGTTCCTCATGAAGTGGAAGGACTCTGATGAGGCAGATCTGGTGCTGGCCAAGGAGGCCAATCACAAGTGCCCGCAGATCGTCATAGCTTTCTACGAAGAGCGCCTCACCTGGCATGAAGACGGGGATAAGAAGGAGAAGGGCACTGTGAGCATGTAAGCAGGAAGTGTCGTCACAGGAATGgtcactgacccccccccctgcagggATGACCTGGAGACACTCATATAGCCAGTACCTAATCGCACCCTATTCCTCTCCTTGGCCTTAACACTTCTTTTTTTATGATAAcctttttcttttctcttttaTGGCTTGGGTAGGTAGGTGtaagtagtgtagtggtatattTTCCACCACATTGCTTCTACCTTTACAGCTCTGACAACAGTGAAGAGTTAAGGCAACATGGAGGATTTGAGTGCGATTTGGGACTGAAAggaccccaccccccccccccccccccccccccttgctaaTGACCATAACAAAAACCACACAAACCAACGATGGACGACACTGCCCACTTCTTCATGATACCTCCCTCTGTGCCCCAGTGTACAGGTTAATGTCCCTGAATAACAAAGAGCCCAATCTAGCCATTTTACACACAAACTGAGAAGGATGAGGGAAGACTGTGGGTTTTGGAGGTGGTGAAACAGGTTGGCTGCGCTCGCTACTGGGGACGGCTTGTCTTTCCTCTTGCTTTATTCCCTTTCTGTATTTTTGTGTAAGTACGATTCTTGATTCTGTGGTACCCTGTCTAGGTACTGGCAGCCATCTTAAGGTGACTTGAAGGTAGTCGTCTTAACTAATAGGTAACGTTAAAATGGCCACGTCTATCAAAGCATGGTCCAGTGCCCAGTATGAAATTCCCGCCTACTTCCTGAATCATGTACTTGCAGTTTTTGAATGCGATTCAAGAGTAAATCATGAAAAAGTGTTgtgcaagtcagttacgaacaaattcttatttacaatgacggcctaccccggccaaaccctaacacggacgacgttgggccaattgtgcgccgccaccCTACGCATATATTTGTTTACGTGGATTCATTTACTTCTACCTTCATGAAGGCCATCAGTTCGGAGTAAATGAATCTACTAATATGATTTTACATGCATCTTTAAGCCCTTTTTCATGAATTTGATATACTCTGGGATTCCATTCAAAAACGGCCTGGGACATGATCCATAGCGGAAGTAGGGGGGACTTTCATAAAGCATTCACAAATcgagcgtctcagagtaggagtgctcaTCCACCTGTCCATATATTCTTATTCATTGTTATCTTAAAaggtcaaaaaaataaataaactgatcctagatcgggCACTCTGGTGGAAACTTTGAATGCGAGCCCTTGACGTGTTTGCCCTGGGAAGATGACCGTCTTCCAAGTCTTATCAAACCTCGACAATAACAGTAGTTATGCCGTAGATAAAATAGTTTTATCGTACTCCGATCACCTTGGTAGAAAATCTCCCCTGCttattttttttgttcagtagTTTTAGTCCACCTTTTGATGTTTTAAGGTCAATATGGTCCCCTCTAAGTACTCCATGTCTTGTTTTATTTCTCCAATTTTTCACTAGTACTGTGGCTGGACTAAGTTTTGAATGAcctacattttaatatttgaacTCTTTTGTCCATCGTCTTCTGTTATGTAGCTGTTCTGCAGGTCAAGTAATCATGTAGCTCTGATTCCATTGCTAAGATCATGAACATATTTAGTCAGAGTAACTGCTTTTTCCTAACTTGAAATTGGATTCTTCCgatgacctttttttttttttttgtaagaattttttttaaaaatcagacAATTTTATCACCACAACAAGCACAATTAAGCAAATATTAGATGCACAGACGGGCCACTTCAAAAGTTGTACCCAATGTTTCAAGCCATCTTTATTTGCAAATGTGAATGATATTATCACAGCAGTGCTGAATTGGAACCCGGCCCTTAGATCAGAAGTCAGTTGACAATCAGCATGCCACATGCTCTGCAGTAGAAAGTGACACCATACGAGCATACGGATTGATTTGATCAAGGTATGCCACCCTGGGGCTAAATGGCTCGGGCCGACGTGTCCTGCCCAGTCCCCTGAGTGAGAGAATGGGATAAGGCAGATCGGGGCTTACCTCCAGACAGTGTTCCTTCTTGGGAATGCTTATCAATCTATTTGAAAATTTTTAAGATCCCTGTCAATGATTTTTGACTTATTTTGAGTATTAAGTGGTTAAATCCACACCACCTACAGAGTATTTGTTCCACTTGTAGAAATATAATTTGTCCTGACCTGAATTTCTAGTTTTATCATCCCTATTAATGCTAAATACTGAATGTTTTGGGACGATGTTATCCACATCATTGACTTCATATTACAGGTTTGTTTTAACTGCCTATTCTGTCCATTTTGGCTTTCCACCCCTTGTGTTGAATGTAGTAATGAGAGCATTGAGTTTGTGTTCAATGATATATCCAAATGTGTGGTAAAAGAGCAAGGTTGTTTAGTCACAGAATAGAGGCAAAGTATTCCAGTATATTTGTAGCCTATACCATTGAGTTGATGATGGGCAGAGTGCTATTGCTATGTATTGTGATCAAATATTCTCGTATTCAATTTGTGATGTTTTCCCActcaaaaaaaataacaatttaagGAGCAACTGAGTCCTGAGTTGTCTTGTCACTGTAGTAATAGAAACAAGTGAAAGATTACTTGGATATCCTTCTCTCTTCAGAACCATCTCTATTTAGGACAAATGTAAATGGTtgtctgtttttcatttttatttatatttactcAAAAGATTTTCATTTGTAGTCCATTTTTGACCATTTGTCTTTTTTTCAAAGTGTTCCACGTTTGGTGTATCtcaccaacattttttttttttttttatgctctGAAATTTGGGTTTTATATGTATTGTAGTAAACTGTTTTCAACATTCAA

Function

GO: NA

KEGG:

id description
K11587 CBX5, HP1A; chromobox protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1571372 lncRNA downstream 27480 41610117 ~ 41610357 (-) True G1375479
TU1571271 lncRNA downstream 143760 41489002 ~ 41494077 (-) True G1375396
TU1571270 lncRNA downstream 155551 41481877 ~ 41482286 (-) True G1375395
TU1570632 lncRNA downstream 181226 41456386 ~ 41456611 (-) True G1374850
TU1570569 lncRNA downstream 237683 41363933 ~ 41400154 (-) True G1374790
TU1571405 lncRNA upstream 84368 41729589 ~ 41733339 (-) True spryd3
TU1571447 lncRNA upstream 193205 41838426 ~ 41841200 (-) True G1375541
TU1571471 lncRNA upstream 206815 41852036 ~ 41852546 (-) True G1375561
TU1571489 lncRNA upstream 219011 41864232 ~ 41952990 (-) True G1375576
TU1571496 lncRNA upstream 240788 41886009 ~ 41887418 (-) True G1375583
XM_036946909.1 mRNA downstream 242169 41385586 ~ 41395668 (-) True calcoco1a
XM_036946910.1 mRNA downstream 242458 41385586 ~ 41395379 (-) False calcoco1a
XM_021565897.2 mRNA downstream 358840 41262830 ~ 41278997 (-) True LOC110491987
XM_021565898.2 mRNA downstream 384054 41249937 ~ 41253783 (-) True mfsd5
XM_036946901.1 mRNA downstream 384493 41249937 ~ 41253344 (-) False mfsd5
XM_021565933.2 mRNA upstream 3976 41649197 ~ 41657737 (-) True nfe2
XM_021565946.2 mRNA upstream 43025 41688246 ~ 41696948 (-) False znf740b
XM_021565945.2 mRNA upstream 43025 41688246 ~ 41697149 (-) False znf740b
XM_021565947.2 mRNA upstream 43025 41688246 ~ 41697150 (-) False znf740b
XM_021565948.2 mRNA upstream 43025 41688246 ~ 41697155 (-) True znf740b
TU1570242 other downstream 608431 41026775 ~ 41029406 (-) True G1374491
TU1570054 other downstream 783248 40852758 ~ 40854589 (-) True rps26
TU1569967 other downstream 1112559 40522997 ~ 40525278 (-) False G1374237
TU1571388 other upstream 18527 41663748 ~ 41664049 (-) True G1375495
TU1571475 other upstream 209559 41854780 ~ 41855361 (-) True LOC110492013
TU1572034 other upstream 908338 42553559 ~ 42569326 (-) True LOC110492054
TU1572237 other upstream 1127085 42772306 ~ 42773296 (-) True LOC110492059
TU1572712 other upstream 1473667 43118888 ~ 43124166 (-) True LOC110491060

Expression Profile