RNA id: XM_021565949.2


Basic Information

Item Value
RNA id XM_021565949.2
length 2023
RNA type mRNA
GC content 0.44
exon number 4
gene id zgc:174906
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41700395 ~ 41704276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCACTGCAGGCTGCAGGGGTTGCCTTTCATCAGCAGGATCCTGACATTTTAAAAGTTAAGGTGGattttgtggcctttatagctatgGTGATAAATGGTACTGCAAAGGTGGCGAGAAGGACCAGGAAGATAGAAATCATTGTGGAAGCAGTGGAGCGGTTGCTGGGGCGGAAAGATTTCTCTGCAAGGGAGTTACATGGAATATTGTCACAAGGCCCTAGAGCCTGAGAAGGGAGATATGGAGAATTGAAGGAAGAAGTAGGAGTTTTGTTTTGCTAATGTACTATTTTTTATTTGGGTGGATTAAGTTAGTTTCCCTATCACGTATGGGTTTTCCTTTTACCTTGTTTTGGTTTCAACCCGTCCAGTTGGTGGCGACAATAGACCCTTTTGGGTTGTAGCCCGCCATCAAACCCACAGAAGAAGAGGCTTCTGGTGTGTTCAAACGTTTCTGGTCCAGCGATAGAAGGGGATAGCTAGCTGATCATGGCTGAAGAAGAACCCCTAGGTGGCGCCCAGCAGGTACTGCGTCGTCTGAAGCCCAAGTTGATCGATACTCTAAGTGCAGACCCTGCCTTTGTGCTGCAGCATGCAGACTCCCTCAGCCTACTGGCCCGGCATGAGTACAAGCAGGTCAAAGCCCTCACTGACCCATCAAAACAGGCCCAGGACCTTCTGGACCATGTGATCAACAAAGGACCCACTGCTGCAGAGCAGCTTCTGCAGCTCCTGACGGGCAAAGAAATGCAGGATACGTTTCCCAACCTTCTGTTCCTCAAGGAACTGCCAGTGAATGATCAAAAAGCTGCAGGTGAAAAAGGTACAGgggGAAATGAAGTTACCAGAAAGAGAGGACAAACATTTGAGTCCGAAGAGAACCTTCCTGCTAAACAGACCTGCAAGGATGGCTCTAAGATGGTGGTGGAGAAGGATCTGATGCATGTGGCTCGAAATATCGGTCGCTCCTGGAGGGCAATTGGTACAGGGGCCCTAGACATCCCCTCTGTCAAGCTGGATCAGATCCAGGAGGACTATCCACACAGCCATGTGGACCGTGTGTTCGCCATGCTGCGCTACTGGAGCACACTGAAACGGCAGGAGGCCACGGCGGCCAATCTCCACTCCCTACTCAGCCAGGGCGACTGGGCCCTGCCGCCAGACAGCATAGACTTTCTCCTGGGCCCCATCTTAGACCCGTAGCAGTCTGACCTTACTACTAACCCTTAGCTACTATTGCATAATTTCCACTGCAGGGATTTACCACAGTGCTTGGCCTCAGACTTTAGTGTTTCCATGGTTGAGGTTTAGTGGGAAGAGGTTGTAACCGGTGGGATGTAAAACCCAGGTCTTCTGCATGGTAACTCAACGTCTTTACCATTATGCCAGGAGGAAATCCTCATGGTCAGACTGGGTgacaatttgtcttacttttatttttttatatttttttaccagATCAGCTttaaaaatatagatattttatacatttgttttCCATCATCTTTTGTTTTGTTGCTTATTtctttgtaaaaaatatatatacactaccgttcaaaagtttgtggttactcagaaatgtccttgtttttgaaagaaaagcattttttttctttcatttgtccagaaatacagtgtagacattgttaaggttgtaaattactattgtagctggaaacggccgATTTCTTTATGGAGTATCTACATGGGCGTACAGacgcccattatcagcaaccatcactcctgtggtccaatggcacgttgtgttagctaatccaagtttataattttaaaaggctaattgatcattagaaaacccttttgcaattatgttagcactgctgtaaactgttgttctgattaaagaagcaataaaactgtcttttatactagttgagtatctggagcatcagtttaatacttttttgctgattccatgtgttatttcatagttttggtgtcttcactattactctacaatgttaaaataaagaaaaaaccttgaatgagtaggtgtggccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1571372 lncRNA downstream 90038 41610117 ~ 41610357 (-) True G1375479
TU1571271 lncRNA downstream 206318 41489002 ~ 41494077 (-) True G1375396
TU1571270 lncRNA downstream 218109 41481877 ~ 41482286 (-) True G1375395
TU1570632 lncRNA downstream 243784 41456386 ~ 41456611 (-) True G1374850
TU1570569 lncRNA downstream 300241 41363933 ~ 41400154 (-) True G1374790
TU1571405 lncRNA upstream 25337 41729589 ~ 41733339 (-) True spryd3
TU1571447 lncRNA upstream 134174 41838426 ~ 41841200 (-) True G1375541
TU1571471 lncRNA upstream 147784 41852036 ~ 41852546 (-) True G1375561
TU1571489 lncRNA upstream 159980 41864232 ~ 41952990 (-) True G1375576
TU1571496 lncRNA upstream 181757 41886009 ~ 41887418 (-) True G1375583
XM_021565948.2 mRNA downstream 3240 41688246 ~ 41697155 (-) True znf740b
XM_021565947.2 mRNA downstream 3245 41688246 ~ 41697150 (-) False znf740b
XM_021565945.2 mRNA downstream 3246 41688246 ~ 41697149 (-) False znf740b
XM_021565946.2 mRNA downstream 3447 41688246 ~ 41696948 (-) False znf740b
XM_021565933.2 mRNA downstream 42658 41649197 ~ 41657737 (-) True nfe2
XM_036946919.1 mRNA upstream 26940 41731192 ~ 41810909 (-) False spryd3
XM_036946918.1 mRNA upstream 26940 41731192 ~ 41814353 (-) False spryd3
XM_021565955.2 mRNA upstream 26940 41731192 ~ 41814584 (-) False spryd3
XM_021565956.2 mRNA upstream 26940 41731192 ~ 41814584 (-) False spryd3
XM_021565957.2 mRNA upstream 26940 41731192 ~ 41814584 (-) False spryd3
TU1571388 other downstream 36346 41663748 ~ 41664049 (-) True G1375495
TU1570242 other downstream 670989 41026775 ~ 41029406 (-) True G1374491
TU1570054 other downstream 845806 40852758 ~ 40854589 (-) True rps26
TU1569961 other downstream 1175117 40523059 ~ 40525278 (-) False G1374237
TU1571475 other upstream 150528 41854780 ~ 41855361 (-) True LOC110492013
TU1572034 other upstream 849307 42553559 ~ 42569326 (-) True LOC110492054
TU1572237 other upstream 1068054 42772306 ~ 42773296 (-) True LOC110492059
TU1572712 other upstream 1414636 43118888 ~ 43124166 (-) True LOC110491060
TU1572781 other upstream 1455260 43159512 ~ 43170042 (-) True G1376748

Expression Profile