RNA id: XM_021565956.2


Basic Information

Item Value
RNA id XM_021565956.2
length 2929
RNA type mRNA
GC content 0.50
exon number 11
gene id spryd3
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41729589 ~ 41814584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTAGCTTTGATTGGCTCACTGAAGTTACCGGTGTCTGATGTCAGTAGGAAGCGCCATACATTTGCAACGTTTTTCTACTGTAAAGTTTTGGAGTCTTACCAAATGAACACAAGTGCCTTTGAATTAATTATTTAAACACATACTGGACAAATGGGGTAACCAACCCATCTTCTGGAAAGCTACTGAGTGTGCTGGTTTTCACACTAGCCCTACCTGAACTCACTGGATTTAGCCAATCCTGACCTCAAGTCAAGATGGATGACATCAACCTACACTACAGGTTCCTGAACTGGCGGAGGAGGATCAGAGACGTGCGTGCTGTACACTTTCAGGAGCGCTACAAAAGAATGCTGAAGAATGGAGACACACTCAGCTATCAAGGGAACTCTGATGAGGTTGGCTGCTATGTGGCTCCCCGTCCCTTATCAAAGGGAAACTGCTACTTTGAGGTGACCATAATGGACACAGGGGTGAGAGGGACAATAGCAGTAGGCCTGGTGCCACAGTTCTACAAGCTGGACCATCAGCCAGGCTGGCTGCCACAGTCTGTAGCCTACCACGCTGATGACGGCAAGCTGTACGATGGGAACCCTGTGGGCCAGCAGTTTGGGCCCAAATGCAACCGTGGTGACAGGATTGGCTGTGGAATATACTGTGATACCATCGAGGCTGGGTTGACCACGGTCTTTTTCACCAAAAATGGCAAAGAGGTGGGCTCGTTGGTGTTCCCTGCAGCGGCGGAGGGCCTGTTCCCAGCAATCGGGATGCACTctctgggagaggaagtgaggCTGGACCTCCAGGCAGAGtgggacatggaggaggccgACAGCATCATGATGGTGGACAGCCACGAGGACGACTGGGGACGTCTCTATGACATCAGGGTCACTGGCACGCTCCTGGAGTACGTTGGGAAGGGGAAGAGCATCCTGGACGTGGGTCTGGCCCAGGCCAGGCAGCCCCTCAGCACACGCTGCCACTACTTTGAGGTGGAGATAGTGGACGCTGGAGAGAAGTGCTACATCGCCCTGGGCCTGGCCAGAAGGGACTACCCCAAGAACAGACACCCGGGCTGGAGCCAAGGCTCAGTGGCTTATCACGCAGaTGACGGGAAGATCTTCCATGGTAGTGGGGTTGGGGAGCCGTTTGGTCCTCGCTGTATCGAGGGTGACATCATGGGCTGTGGCATCATGTTCCCACGGGACTACATATTGGATGGTGAAGATGACATAGATGAGTGGGACCCGTTGGAGGTGCTGCCAAGGCAGGGCGAGGGGCGCATCCAGAACATTCTGTACCtgaatgatgaggaggaggaggaggaagaggggggcgAACTGGACCAGGAGCATGACGGCAGGAAGGTCATGGTGTTCTTCACACGGAACGGGAAGCTGATGGGTCGCCGTGAGGTGGTGGTGCCCCCAGGGGGGTTCTACCCCACCGTGGGGATGCTGAGCAGCGGAGAAAAGGTCAAGGTAGACCTGCACCCCCTCAGTGGATGAACCTGACCAGCCTGCATCCTCTTAGTGGATGAGTCCAGAAACCGAACACTGCACCCTGTCATCGCCTGACCAATGACCACATCAAGCCTTACTGGGGATCAGCGTAGTGAAACTAGGGCAGGGATTCATTCCATGGCGTTCTATAACTGACTTTTAAAGGTATTTTATGCTTGAGCGTTTACCATTTATTTGATCTCTGCAAATGTCTGGGAAAATGCTGTTAAAAGGCATATTGTGGGCTGTATAGGGTGCTACCCTGTAACACAACTTGAATAGAATCCCAGCCTTAGTCACAACCATCAGGACTCACTgtggcaaaaatatatatatatacactgatgcagtgaaatgtgttgttttacagcgTCAGCAATAGTAGTTTGGCAAATTagggtgaagtgccttgctcaagggaacatagattttttttttttcacattgttgTCTCGGGTATTCGAGCCAGCGACTCCTAAAACTACCATCAGGACTGACTGTGGCAACAATACCATCAGGATTCACTGTGGCAACACTACCATCAGGATTCACTGTGGCTAAACTACCATCAGGACTCACTGTGGCTAAACTAAAGGCTTAGCCTGAGACCGAGTTGTTGAATAATTCTGTGCAATTTGTTGTTTTATCATTTTTCATCAAGccacatttttttccccctgtcAAAGCAAATAGTCAGCCCTGCCTGGTCCTGGGCTCTGAAACAGTGGAGCCCCTAAAATGTCTCTCATGAGGTCTACTGGCACACTTTGTTGATTTCATTTGTCATGGCCCCAAACATAGCAATGCATGTCCAACAGAGTCCGAGAGCCTGCTGGCAGTTCATGTTATAGGCACTAGTGAGTGAGTAGTGCTCTCCTGTGAGCACTGAAagttgcttcccaaatggcactctatccctaatatagtgcactacttttgactagtgcCCTATTTGCCATGGACAAAAAAttatgcactacatagggaatagggtgacatttgggacgccGGTAGATTCTGTGTGTGATTGAGTGAGTAGTACCCTCCTGTGAGTGCTCACTAACCTGCCTCCTGGAGCTGAGCTGAGCTTGATAGGCCCCAGATCTGTTAGTGCTTTATAGCCAACtcttatggtcattgtcatgccaaacacaGATTTGGGACCAGGCTTGAGCTGTGCTAGTTGGGAGTAAAAACGATATTCTCCATATCACATGGATGGCATCCTGGTATCAAGTAACCCCTTATCAAAGACTGGAAATTATGTTAATGTGTGAATATACACAACATGGTATGtggacaaaagtatatggacagccgttgaaatgagtggatttgactatttcagccagaaccgttgctgacaggtgtatacaatcgagcacacaatTGAgcctgcttccaactttgtggcaacagtttggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1571372 lncRNA downstream 120835 41610117 ~ 41610357 (-) True G1375479
TU1571271 lncRNA downstream 237115 41489002 ~ 41494077 (-) True G1375396
TU1571270 lncRNA downstream 248906 41481877 ~ 41482286 (-) True G1375395
TU1570632 lncRNA downstream 274581 41456386 ~ 41456611 (-) True G1374850
TU1570569 lncRNA downstream 331038 41363933 ~ 41400154 (-) True G1374790
TU1571447 lncRNA upstream 23842 41838426 ~ 41841200 (-) True G1375541
TU1571471 lncRNA upstream 37452 41852036 ~ 41852546 (-) True G1375561
TU1571489 lncRNA upstream 49648 41864232 ~ 41952990 (-) True G1375576
TU1571496 lncRNA upstream 71425 41886009 ~ 41887418 (-) True G1375583
TU1571495 lncRNA upstream 76902 41891486 ~ 41895597 (-) True G1375582
XM_036946917.1 mRNA downstream 26916 41700395 ~ 41704276 (-) True zgc:174906
XM_021565949.2 mRNA downstream 26940 41700395 ~ 41704252 (-) False zgc:174906
XM_021565948.2 mRNA downstream 34037 41688246 ~ 41697155 (-) True znf740b
XM_021565947.2 mRNA downstream 34042 41688246 ~ 41697150 (-) False znf740b
XM_021565945.2 mRNA downstream 34043 41688246 ~ 41697149 (-) False znf740b
XM_021565962.2 mRNA upstream 38043 41852627 ~ 41857489 (-) False LOC110492013
XM_021565967.2 mRNA upstream 47802 41862386 ~ 41879803 (-) False LOC110492014
XM_021565964.2 mRNA upstream 47802 41862386 ~ 41879804 (-) False LOC110492014
XM_021565965.2 mRNA upstream 47802 41862386 ~ 41879805 (-) False LOC110492014
XM_021565966.2 mRNA upstream 49179 41863763 ~ 41879805 (-) True LOC110492014
TU1571388 other downstream 67143 41663748 ~ 41664049 (-) True G1375495
TU1570242 other downstream 701786 41026775 ~ 41029406 (-) True G1374491
TU1570054 other downstream 876603 40852758 ~ 40854589 (-) True rps26
TU1569961 other downstream 1205914 40523059 ~ 40525278 (-) False G1374237
TU1571475 other upstream 40196 41854780 ~ 41855361 (-) True LOC110492013
TU1572034 other upstream 738975 42553559 ~ 42569326 (-) True LOC110492054
TU1572237 other upstream 957722 42772306 ~ 42773296 (-) True LOC110492059
TU1572712 other upstream 1304304 43118888 ~ 43124166 (-) True LOC110491060
TU1572781 other upstream 1344928 43159512 ~ 43170042 (-) True G1376748

Expression Profile