RNA id: XM_036946984.1


Basic Information

Item Value
RNA id XM_036946984.1
length 2216
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110492076
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 43822715 ~ 43828920 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttattggatgccaaccgccgttaaacctcatcgaagaagaagtagaacacaaaataaaaaataaaataaaaatattactATGTAAGGAAGTGGAGGAAGATCACAGGATGGATACTAGTGGGAAACCCTCCACAGCCCAATTTCTGCTATTAGCCACCAGCTCAGCACTTACTGCAGTCTTCTACTCTGTGTACTGGAGGAGGACAACAACAGTAGCAAGATTAAAGGGAGCCAAGAAAGTGTCTATTGATCAGGATATGAAGAACATCCTGACAGAAGCACCAGGAAAATGTGTCCCGTACGCTGTTATTGAAGGTGTTGTGAGATCTGTGAAAGAAACCTTGAACAGCCAGTTTGTGGACAACTGCAAAGGGGTCATCGAGAGGTTAACTCTAAAGGAGAAGAAGATGGTGTGGAATCGCACCACTCATCTCTGGAACGAGAGTGAAAAGGTCATCCACCAGCGTACCAACACGGTGCCCTTTGACCTGGTGTCCCACGACGAGGCTGTGGCAGCCACCATTCGGGTCATCCGTCCCCTGGACTCCTCGGAGCTGGACCTGGAGACCACCTATGAGAACTTTCACCCCACTGCCCAGTCCCTGACCAACGTCATCGGCCACTTCATCAGCGGGGAGCGCCCTAAAgGTATCCACGAGATGGAGGAGATGTTACGTCTGGGGGAGAGTGTGACCGGGGTCGGGGAGCTGGTGCTGGACAACAACCTGGTGAAGCTCCAGCCTCCCAAGCAGGGCCTGAGGTACTTCCTCAGCCGACTGGACTATGACTCCCTGGTGGAGAAGCAGCAGAGCACAGTCAGGTTCTGGAGGATCCTGACTATGATGTTTGGTGTAGTTGCTTCCACAACGCTCTTCTTCATCCTGTGGAAGCAGTGGGCTTACCATacacagaggaggaagaagaagaatgtTCTGGAGGAATTCAAGGAGCAGCAGAGGAAGCGGTTAAGGGAGCTGAATGTGGAGGaggccagtgtttcccctagtGCCTGTACAGTGTGTTTGAGCCAGGAGCGTTCCTGTGTGTTCCTGGAGTGTGGGCATGTCTGTGCTTGTGACCGGTGCTACCAGGCACTGCCAAAGCCAAAGAAGTGCCCTATCTGCAGGGCGACGATAGAGAGGGTAGTGCCTCTTTATAACAGGACTGATCTAATGTCACTGAAAAAAGGATTGTCGGCTTATTTTTCTGTTTTCTTTGCTTTGCTTTTAATTGAAAGATCAAGCTGACTTGTAGCTTGATTTGAGTTATGTCAGTTGAAATGAAAACATGTCATATCCAGGATCCTTCTTAGTTGTAGAATCAACTCAGAACTTGAATGTTTTCACCTCAATGTTTCTCCAAAGCACACATCAAAGCGATTTTGAATAAATAAagacaaacaaaataaatatatccTCAACCTATTTTACAAATCTGTTGGCCCTATACTATCCACACACATTTATGTAAATGTTTATGGCTGCCAGGAGAGGGTGATGTCTGCCTTGCATACCTTTTCAACAGGGAAGAAAGAGTACATCGTATTTTATGATTTAGATAAACCATTGCATTTGCTCTAAGCAGAAAAGGCACAGAAATCATGTACAAAATAAAGGTAtttgcaaattaaaaacattcgATAAAGTATCAAGTTTTTTAAGTGACAATCAGTAAGTTATCATAAAAGAAGGAGCAATTCACAATGGTGTTAATAACTTATTCATGAAGTGTTGACTGTTACGGGATGTCCATTGAACCGAGAAAGTAAAGAATAAATACAATATCACGAGCGTGTCGTGACGAGACAAGTGAATGCACCAGGAAAAAGCTACCTCAGTCGGTGACGGATCTTCTGCCAATTCTGCTAGGGATTGTTTTGCATCGCTCTCCTACACTATTTGCATTTCTCTCCATCAGTCTTTTATTCTGTAAATGACTATTCCATCGATAAAATACTCATTTATTCGTAAAGAGGACGGAACATTTTGGATAAAATGTGTTTTATGCAAGCGATATCAtaggctacagtataatgttCAGTTGATTATCAAGTCATCTTTTTCACTGACGTCTTTCAGTATCGATTATTGACTAAGCTTTTATTGTGAAGACATGTCGGAAAGTATTGCCTTACAATGAGAAAAACTCATTATGGTGCTGATGGCGACAGGTCTCCATCACCGGTCTCCTTGCAGGATGCCAACAACTTCTATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1573651 lncRNA downstream 1243 43821178 ~ 43821472 (-) True G1377540
TU1573665 lncRNA downstream 12031 43810462 ~ 43810684 (-) True G1377554
TU1573656 lncRNA downstream 26834 43794732 ~ 43795881 (-) True G1377545
TU1573654 lncRNA downstream 31018 43791492 ~ 43791697 (-) True G1377543
TU1573646 lncRNA downstream 48528 43773426 ~ 43774187 (-) True G1377535
TU1573693 lncRNA upstream 12877 43841796 ~ 43842112 (-) True G1377578
TU1573717 lncRNA upstream 27386 43856305 ~ 43856525 (-) True G1377601
TU1573721 lncRNA upstream 29282 43858201 ~ 43858695 (-) True G1377605
TU1574391 lncRNA upstream 110383 43939302 ~ 43982744 (-) True G1378199
TU1574416 lncRNA upstream 154021 43982940 ~ 43985022 (-) True G1378220
XM_021566073.2 mRNA downstream 75401 43742295 ~ 43747314 (-) True LOC110492074
XM_021566074.2 mRNA downstream 75405 43742295 ~ 43747310 (-) False LOC110492074
XR_005036525.1 mRNA downstream 89151 43726575 ~ 43733564 (-) True LOC118939539
LOC110491064 mRNA downstream 103734 43713174 ~ 43718981 (-) True LOC110491064
XM_036946978.1 mRNA downstream 144990 43605388 ~ 43677725 (-) True LOC110492072
XM_021564436.2 mRNA upstream 117565 43946484 ~ 43953965 (-) True LOC110491066
XM_021566082.2 mRNA upstream 162445 43991364 ~ 43997840 (-) True LOC110492081
XM_021566094.2 mRNA upstream 600957 44429876 ~ 44446361 (-) False LOC110492085
XM_021566091.2 mRNA upstream 600957 44429876 ~ 44448953 (-) False LOC110492085
XM_021566090.2 mRNA upstream 600957 44429876 ~ 44448954 (-) False LOC110492085
TU1573587 other downstream 129877 43692320 ~ 43692838 (-) True G1377482
TU1573055 other downstream 484160 43337499 ~ 43338555 (-) True G1376991
TU1572954 other downstream 598332 43217809 ~ 43224383 (-) False LOC110492063
TU1572781 other downstream 652673 43159512 ~ 43170042 (-) True G1376748
TU1572712 other downstream 698549 43118888 ~ 43124166 (-) True LOC110491060
TU1574744 other upstream 724095 44553014 ~ 44553547 (-) True G1378530
TU1574785 other upstream 1089094 44918013 ~ 44964482 (-) True plxna2
TU1576625 other upstream 1487028 45315947 ~ 45320378 (-) True slc48a1a
TU1576791 other upstream 1789298 45618217 ~ 45627698 (-) True LOC110492109
TU1576851 other upstream 1876191 45705110 ~ 45705453 (-) False G1380431

Expression Profile