RNA id: XM_021566082.2


Basic Information

Item Value
RNA id XM_021566082.2
length 3873
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC110492081
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 43991364 ~ 43997840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCTGGTCCCTCCTTCACACTGGATGCAGTCCCAGCAGGTTATCATTTACGGAGGAGAGATAACGTTAGAGAGCTCGGATGATGCTTCAAATTACACCTTTTCCATGCTTTTCGTTCGTAGAAAAGCAGTGACAGAGACATTTTAGATGAATGTGACAGAAGAACAGTTGATCCAACCAGATTCTTGAGACAAAAACACATGGCAAGAAGAACAAGGATGTTTTTGACATTTCCTGGTATAGTGGTTGTCTGTCTGCATCTTCTGGGTGGCTCAATGGAGACAGCCAATGAAGTAGACCCATACAAGATTCTTGGAGTGACCAAAAGTGCAAGTCAAGCTGAAATCAAGAAAGTGTACAAGCGCCTAGTTAGGGAATGGCATCCGGACAAAAACAAAAATGAAGGCGCTGAAGATATGTTCATCAAGATTACCAAATCTTATGAGATATTATCCAATGAGGAGAAGAGAACCAACTATGACCGGTATGGCCAGACTGATGACACCCAGCCGTATGGTCATGGTCACTATGGTCACCGCCACGACCACTTCTACTTCGACGAGTCCTTCTTCCACTTCCCATTCAACAATAAGGGCAACCGGGAGTTTGCCGACAGCAAGTACGCTCTGCACTTCAACCAGTATGTGAATGACGTGGTGCCTGACAGCTATAAGAGACCGTACCTGATCAAAATCACATCCGACTGGTGTTTCAGCTGTATCCACATTGAACCGGTCTGGAAAGAGGTTGTGTTGGAGCTGGAAGCCTTGGGTGTGGGGATTGGTGTGGTGGACGTTGGTTATGAGAGACGTCTGGCCAATCACCTCGGTGCTCACCGCACCCCATCCATACTGGGGGTCATCAACGGGAAAGTGACCTTCTTCCACTACGCTGTGGTGAAGGAGCACCTGAGGCAGTTTGTGGAGGACCTGCTCCCTCAGAGACTGGTTGAGAAGGTTACAGACAGGAACGACTTTCAATTCCTGAACAGCTGGCATGAGCAGAACAAGCCACACGTGCTTCTGTTTGACCAAGTGCCTGTAGTTCCACTCTTGTACAAGCTGACTGCTTTCGCCTATAAGGATTATGTTCAGTTTGGATACGTGGACCAGGGCCTGTCAGAGACCGCGAACCTACTGAAGCAGTTCAACATCAACACCTACGCCCCCACCATGCTGGTCTTTAAGGAGAGTACAGACAAGCCTGCAGACATTATACAGGCTAAAGGGATGAAGAAACAAATCATTGATGAATTTATAACGAACAACAAGTTTCTCCTCGTCCCTCGACTGGTGAACCAGAAACTGTTTGATGAACTTTGCCCTGTGAAGCAGTTCCACCGACGCAGGAAGTACTGTGTTCTACTGATCACTGGTGATGAGGAGTCCTATACCATAGGAAACCAGGCCTTCCTCACATTTGCCTCTACCAACACTCTGGAGGTGGTGAGGTTTGCCTACGTCTACCAAAGACTGCAACAATCACTGTGTGATATTCTGCTGAAGACTAAGGACAGcacacctccaccaccacagGTGTTCATCTTGGAGCGTCGTAACCCAGCAGGGAAGGTCCTGTACAAGGAGGTGGCGGGCGGTTGGAATGGTACTGATGAGGATAAACAACGTCTGTTGGATGAGCTGGAGAGGCTGCAGAAAGACCCCTCCATCCTCAACTACGACGCCATGCTGCCGGAGCTCAACAATGAGTTTGCCTCTATGTTTCTTATTCGATGGATCTACACAGCATATGATTACATTTCTGAAATCCTTGATGATATTCTTCATAATAATTGGCGTGAGATGATGCCCCTCCTGTCGTTGATATTCTCTGCCTTATTCATCCTGTTTGGCACTGTGGTGGTTCAGGCCTTCAGTGACTCCAGTGAAGATGGTAAATCCAAACCGAAGGCAAAAGAAGGAACTAAGGCAGAAAATGGGTCACCGGGTAGCAGCAGCACCTCAAGtcGCCCACCTAAGAAGAACTTTGTGGAGGTGACGGAGCTGACAGACATCACATACACCAGTAACCTGGTGAAGCTGAGACCAGGCCATATGAACGTGGTACTGGTGCTCACTGATGCCACCAAGAATGTCTTACTCAGCAAGTTCGCCAAAGAAGTCTACTCTTTCACCGGGAGCCTGACTCTTCACTTTTCCTTCCTGAACATGGACAAGCACAGTGCATGGATGGAAACACTGTTGGAGTTTGCCCAGGACGCCATGCAGATAGACACCGAAGAGGATGACTGTGCCCGCCACAAGATAGACTACACAGGCTATGTGCTGGCACTCAACGGCCATAAGAAGTACCTCTGCCTCTTCAAGCCTGTCTACACCGGGGAGGAAGGCGGGTCCTCCGAGGAGGAAGGGCCTGGGGGCGCCACTGGGGGAGGGAAGAGGTCTAGGTCCGGGTCCAGGGACGACCACCCACCACGCAGGTCTACGCCCAGGTCCCGCTCCACCGCCACACTGCAGATCCACCACAAACTGGACCGCCTGGGGCTGTGGATGGAGAGGCTTATGGAGGGAACTCTGCCCCGGTACTACATTCCTGGCTGGCCGGGCCTGGACAAGATCACAGGCCCCAAATAGAAATCGTGTCAATTACTTATACTGTACGTTGTGAAAAAATATCCCCAAAAAGATATGCTTGGAAGTTTGAGATGCATTGCATGCACACATCCCAAGTCAGGATACAGGCCTAAATGGACGCGCTCCAAAGCTATCTGTGTTTAAAAGCCAAGACGACGCCGAGGTATCCTCATGGCTGTGttcagaggctactgtatgttttgaGTGATTGCACTAGGACATGGTTTGAAGAAATTACATTCAATAGTGAGGTTGGCTTGGCTCATTGCGACAACTGTACCACATTTATCTGCCGTCATGTTCTGCTGCCTTTTTTTGCACTTGAAATATTTATTTGTTACGGAAGTACTTAGAAAAGTAGCTTCAGTAAAAGAGGGAGGGTGCAGAATATGGTGGATCTCAAAGCAACAACCGTTGAACAGTTCCTAGATTGCTTTCCCTTTCGGATCCCTTCCTCTGCATGCTGTCATTAGTTAGCTACTTAGTTCTAATATCGACTGCTGTTACAACCTCTAGCTGCGCTAACTGAATCACTGTGGTCATAAGTAGACTCCTGCCTTTTTAGAACCGTCATCCATCATTATTCAAATATCTAATCTATCAGATTGTGCTTTGATAttagcttcactgtcccaatGGTGATTGGTCAGTACTGTGAATAGTGATGCATGGCTCTACTAGATCTATTTTCTTCACCATTTTGACCTCActccaaaaaaatatattttattcttgTGCaatatatactgtaactacaatgCCTTCCATTTATCCTGGGCTGCTAATATTTCATGTTCATTCTTATTCATGTAGAAataggctatttaaaaaaaagtctTAACGTTATACTTTAGCTTTTTGTTACATGACCAAGTTTTTTGCATTAGTCTATTTCCCTTTATTTTTTACGTGGAAGACAAgagaaacccgcacactgctcttgctagtgtCACTGTTCTTTATTAGGCTTTACATATCGTCCTcttggccttcgtcagagcttttttAGTTTTACAACAGAACTTGGCCAGTGGCTTCATATAGCAATGAAATAgtgtacagtggcttgtgaaaatattcaccccccttggcatttttcctatcttcttgccttacaacctggatttAAAATAGGTTTTTTGAGGGGTGCtttgtgtcatttgatttacatgcctaccactttgaagatgcaaaatgttttttgtgaaacaaacaagacaaaaaaatggaaaacttgagcatgcataactattcacccccctcccccctccaaagtcaa

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process

KEGG:

id description
K09536 DNAJC16; DnaJ homolog subfamily C member 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1574418 lncRNA downstream 4984 43985786 ~ 43986380 (-) True G1378222
TU1574417 lncRNA downstream 6015 43985111 ~ 43985349 (-) True G1378221
TU1574416 lncRNA downstream 6342 43982940 ~ 43985022 (-) True G1378220
TU1574391 lncRNA downstream 8620 43939302 ~ 43982744 (-) True G1378199
TU1573721 lncRNA downstream 132669 43858201 ~ 43858695 (-) True G1377605
TU1574518 lncRNA upstream 191716 44189556 ~ 44190280 (-) True G1378317
TU1574548 lncRNA upstream 206681 44204521 ~ 44204774 (-) True G1378346
TU1574555 lncRNA upstream 220748 44218588 ~ 44218850 (-) True G1378353
TU1574557 lncRNA upstream 224918 44222758 ~ 44224006 (-) False G1378355
TU1574559 lncRNA upstream 225049 44222889 ~ 44224006 (-) False G1378355
XM_021564436.2 mRNA downstream 37399 43946484 ~ 43953965 (-) True LOC110491066
XM_036946985.1 mRNA downstream 162444 43822715 ~ 43828920 (-) False LOC110492076
XM_036946984.1 mRNA downstream 162445 43822715 ~ 43828919 (-) False LOC110492076
XM_036946983.1 mRNA downstream 162547 43822715 ~ 43828817 (-) False LOC110492076
XM_021566076.2 mRNA downstream 162547 43822717 ~ 43828817 (-) True LOC110492076
XM_021566094.2 mRNA upstream 432036 44429876 ~ 44446361 (-) False LOC110492085
XM_021566091.2 mRNA upstream 432036 44429876 ~ 44448953 (-) False LOC110492085
XM_021566090.2 mRNA upstream 432036 44429876 ~ 44448954 (-) False LOC110492085
XM_021566093.2 mRNA upstream 432036 44429876 ~ 44449494 (-) True LOC110492085
XR_002468947.2 mRNA upstream 463533 44461373 ~ 44464268 (-) False LOC110492087
TU1573587 other downstream 298526 43692320 ~ 43692838 (-) True G1377482
TU1573055 other downstream 652809 43337499 ~ 43338555 (-) True G1376991
TU1572954 other downstream 766981 43217809 ~ 43224383 (-) False LOC110492063
TU1572781 other downstream 821322 43159512 ~ 43170042 (-) True G1376748
TU1572712 other downstream 867198 43118888 ~ 43124166 (-) True LOC110491060
TU1574744 other upstream 555174 44553014 ~ 44553547 (-) True G1378530
TU1574785 other upstream 920173 44918013 ~ 44964482 (-) True plxna2
TU1576625 other upstream 1318107 45315947 ~ 45320378 (-) True slc48a1a
TU1576791 other upstream 1620377 45618217 ~ 45627698 (-) True LOC110492109
TU1576851 other upstream 1707270 45705110 ~ 45705453 (-) False G1380431

Expression Profile