RNA id: XM_021566106.2


Basic Information

Item Value
RNA id XM_021566106.2
length 1990
RNA type mRNA
GC content 0.41
exon number 3
gene id slc48a1a
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 45315947 ~ 45320378 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGATGAACCTTCCTGGGCCGGTAGGAGAAGTTGTTAATTTGTTGCCACTGTAGGTTACTGTTTTTGTCGGTTGTGTGTAATTTACACAATTGCAGCGTGTGTTGTGTTCGCTCGATAACCAATTCGTTTGTATCAATTCGAGATGGTTCATGTGATGTAGCTGAAATCAGTTGTTGTATAGCCAGTTCGAGTGATTTCAGGATAACAACAGCTAGCCAGGACTGCTGTTGCGTAATCACTATACTCCGTGAGCCGTGTTTGTCAGGCTACGTTTATACGTTGTTATTGACCGTCAAAATAGCagcttcccccccaaaaaaacttttcaatttatagttatagttatatccGTGTTAATGGGGAAGAGTAGAACATACATCAGTATAGGATATGCTACCTTTGGTATGCTAGTTGGTTTTTCAGCATTTTTTGTCTGGAACATAGCATACAAACAACCATGGACGGCGGCAATGGGCGGATTGTCAGGAGTGCTGGCGCTCTGGGCCCTTGTCACCCACATTATGTACCTGCAGGACTACTGGCGCACATGGCTGAAGGGACTCAAGTTCTTCATCTTTGTTGCGGGTCTCTTCTCCATCCTGGCTGTGGTGGCCTTCGCTACTTTCCTCACCCTCGCCATCACACAGAAGCAATCTCCCACTGACCCGACGAGCCTGTACCTGTCCTGTGTCTGGAGCTTCCTCACTCTCAAATGGGCCTTCCTCCTAGCCCTGTACTCTCACAGGTACCGCCAGGAGTTTGCAGACATCAGTATCCTCAGTGACTTCTGATCACCATCCATTTTACCCACCATACACTGGGTAGGAGGTTTGGGGAACCAGCCAGCTGCAGAAGAGTTGGTAAAAAAAAACGTGTTTCAACGAAAGTGAGCACAGAGAATCTGGAAGGGCTGCATAAGAGTTCTTTGAACTTTTAATCAGCGTAGTTACACACTCCGGACAAGCCCTACATTGTTGTCAACCCTCACTACTATACATACAGTAACAGCTCATTTGTTTTGTTGGGGTGAGTAGCCATATAGTCACTTGGAAAAACTCCTGATGGGGATCCACTGCTTATCTGTAATGGCAGGCAGCAGTGGCTTATGTTTCTAAGCAAGGATTTGCACAAGGCTATTTGTAGAGTGGCTTAGGGATCAAGACTAGGTCATGTAGGCTGTGGGGGTTTGCCTCTGAGGATTTGGGTCGAAGCTTTCCAAAAAGACACAGTTTTTAAGAATTGTATTTTAAATTTCAGGTTGAAATGTATTGATCCAATGTCCAATCTAATGAGTAAGTGTCAAATACACCCATGGGGAAAAAGGTTGTCACTGTGTTATGTGgtctctctgctgtttctctctccgTCACTAGGGAGAGCAGGATTATTTAGCCAGTCGTTGCTATCTCTGTCTGGATGTTGGCTTGTCATATGCTTTTGAATATTTGTTATTCTCTTTTAGTTAACTACACACACATATTTGATGTGATGCATAATAATGCACTTTAAAGTGTTATTCATTCCATTGGATTGGTTCTTCCAATGCTGTCGTCTGCTTTTAAAGAGAAAAGGCCAGAGGGTGAGGATGGATATAATGCAAGCTAATACACAGGTGTATGGAAGTCCTGATTTGATGGGGTTTCTTTTTCACTGTTTCTATCTTCATACGTTTTCTGTCTTATATTCATGTTGATCAGCACATTATTTGGCTTTGTTTTTATCATATTAAATATCTAATGTATTTAAACAATTTCCACCTTTTAAACAAGTTGGTCTTGATTTTAAACCTGGTATCCTTCTATATTTGTATAGCAATGCCTGCAAATGTGTGAATGGTGTGTTTTTGTACGAGATAGAGAAAGGCTATTCGTGAGAGAGAAATATTTTAAATAAACAATTGGTTCGTTTTGCATGGTAagagttttttaaaaatgtattcacaAGATGTATTTTGGTTGTACATTCTATTAATAAATGTTGAACTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1575333 lncRNA downstream 78948 45236754 ~ 45237000 (-) True G1379089
TU1575320 lncRNA downstream 88332 45227395 ~ 45227616 (-) True G1379076
TU1575304 lncRNA downstream 102840 45212762 ~ 45213108 (-) True G1379060
TU1575261 lncRNA downstream 133945 45181779 ~ 45182003 (-) True G1379017
TU1575251 lncRNA downstream 138336 45177192 ~ 45177612 (-) True G1379007
TU1576670 lncRNA upstream 68178 45388554 ~ 45388866 (-) True G1380277
TU1576683 lncRNA upstream 82441 45402817 ~ 45403068 (-) True G1380287
TU1576761 lncRNA upstream 205613 45525989 ~ 45526505 (-) False pou6f1
TU1576763 lncRNA upstream 212070 45532446 ~ 45533030 (-) False pou6f1
TU1576762 lncRNA upstream 213392 45533768 ~ 45536552 (-) True pou6f1
XM_021566103.2 mRNA downstream 164 45308346 ~ 45315784 (-) False LOC110492093
XM_021566104.2 mRNA downstream 164 45308346 ~ 45315784 (-) True LOC110492093
XM_021566101.2 mRNA downstream 8411 45303720 ~ 45307537 (-) True LOC110492092
XM_021566102.2 mRNA downstream 8414 45303720 ~ 45307534 (-) False LOC110492092
XM_021566098.2 mRNA downstream 8420 45303720 ~ 45307528 (-) False LOC110492092
XM_036947020.1 mRNA upstream 57889 45378265 ~ 45432804 (-) True itga5
XR_005036638.1 mRNA upstream 135186 45455562 ~ 45455616 (-) True LOC118939605
XM_036947024.1 mRNA upstream 173537 45493913 ~ 45502617 (-) False csrnp2
XM_021566115.2 mRNA upstream 173537 45493913 ~ 45505194 (-) True csrnp2
XM_021566116.2 mRNA upstream 185703 45506079 ~ 45523249 (-) False LOC110492099
TU1574785 other downstream 351466 44918013 ~ 44964482 (-) True plxna2
TU1574744 other downstream 762401 44553014 ~ 44553547 (-) True G1378530
TU1573587 other downstream 1623110 43692320 ~ 43692838 (-) True G1377482
TU1573055 other downstream 1977393 43337499 ~ 43338555 (-) True G1376991
TU1572954 other downstream 2091565 43217809 ~ 43224383 (-) False LOC110492063
TU1576791 other upstream 297841 45618217 ~ 45627698 (-) True LOC110492109
TU1576851 other upstream 384734 45705110 ~ 45705453 (-) False G1380431
TU1577246 other upstream 1096184 46416560 ~ 46419878 (-) False LOC110492748
TU1577247 other upstream 1096184 46416560 ~ 46419878 (-) True LOC110492748
TU1577316 other upstream 1278321 46598697 ~ 46601375 (-) False LOC110492764

Expression Profile