RNA id: XM_036945814.1


Basic Information

Item Value
RNA id XM_036945814.1
length 5012
RNA type mRNA
GC content 0.52
exon number 28
gene id LOC110492744
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46317844 ~ 46330626 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATATAAGGCTTCTACAGGCATCACTTTTCTTAAAAAATTAAGGTTTGATTGGAAAAACTAGATGTGTTTATAGGTTGAAGAAATAGCTTGTTTTAACTTCTGTGATGTTATTAACTGAAAATGAATTAGAATGTGTATATTTATGTGCTCGTTAAAATGTCCTGACATACATTTGCATTGCTATTGGCAGTTGGTTCTAACTGCAGTTACCCAAGGCCCGGTGGGCCTCATTCACCTGCAGTAAACCCAAATCAGAACAGTGACATAAATGTAAACCTGCCCAGAGTAAAGGGccataaataaaaacaaatgtctAGAAACCCACTGCGCCATAGACGTGGGTGACAGGGTGTACTTGTCATACTGGGTGGTGTCAATTCTGCCACCGGTCGGCAACATGGCAGCCCTTTGTGTGGGCTGGGTGCTGTTCCTGATCGGGCTCCCTGCCTGCACCCTGGGGGTTCGCAATAGGGAGCACCTGCCTTGTGGGTACCACTGTGAGTGTCTTGATTCTGTATGTCCCGTTGAGCCAGCTCCATCTGCGTCTTCATGTTGCCCTCTCCCTACGCTGTTGGCACCAGGGGCTTCCTGATGACTGCTCTCCTCATTCTGAGCTGGGCTGTGTCATTTTCTCTGATCAGAATATACAGGTCCTCGTCTAGATCTTCCATGTGGggttttcctctgtctctcactgacccCCATCCTTGCATGTTGATCTGGCATCCGGTTTCTGCTTCCAGTGACTTGGCCCCACTAATCTGCCTATATAAGTTATAATCGGGCTAGTCTTTTACAGGCACAAAGCTTCTCCTGCAGGTGAATGAGGCCCACCGGGCCTTGGGTAACTGCAGAGGTTGTTTGTCTACAACATGTCGTTGGACATGTTATCCTGCATTCTATTGATCTCTTCATCCATAAGCTTCTCTGTGTCTGTCAAGATGCAAAACAGATTTGGATAACTGGTCATAATCTTTTCAGGTAACGATTGTGTCAAATAGGCAGGACTCTGTCTCCCCTTCTGTCTCCCTAGTGTCATCTTTCTGTCATCAAGAGTGCAAGGTCTTTTTTTATCAACAGAAAAAAAGCTTGGAAATCTGGTCAGAATCTGGTTAAGTTTGATCTCCATAGTTATCAATGATTTATGTTAGGACCATCTCTCTCACATTGTGACATCACCAAAAGAGCATTGTTCTTCTGTGAGCATTTGTGCCTGTGTTAAAGGTGGAAAGCCATGACCAGTGTGAGCTTGTGGACTGTCACAGAGGAACTGTGAAGATGGCCAGCCTTACAAGTTCCACCTCCGATGACAAGCAGAAACACACCACAGCTCCGGGTATTTCAGGGGAGGCGGAGCGTTCAGGGAAGAGCAGTGACACCGCGGAGGAGGACATGCCAGCTGAGGGGGGAGTGGAGAATCAGATCAACGAACAGCACCTTCGCCGCATTGAACGCATGTTCAGAGAGGCTGACACGGATGGAGGGGGGGGGTTGGATATGGCTCAGTTCCGAGATGCGATGAAGAAGATCATGGGCGATGTGGATGACGAGGATGTGGACATTATCTTTATGAAGGTGGACACCAACTGTGACGGCAGAATGGACTGGGTTGAATATCTGAACTACATGCTTTTAGAGTACAGAGAGAAAGACTCTTTGCAGCAGCAAAACAGGCCAATCTACTTTCCCAAACCACTCAAGATTGTGCCTGTTGCACACTGTGAGACCATTGTCCGGCTCCAGTTCTACCCATTCCAGCCTCCAGCCGGGGAGAAAAAGACAGACTCTGGGGAGCATGGCAGGGCCTCGGGGGGTTCTAAGGGCCGCGCCCACAGTGGACGCTACCTGTCAATCAGCCGTGATGGCGTTCTCAACTACTGGAGCGAGAGGTTCAAGCTGCTGCGCACTGTCAATATAAGTCAGATGCAGCACACAGTGGCCCAGCCCGTCTGGGTGACAGACATGGCCTGCCTGAGCAACATCAACCagctctccatctcctccacagGGCGAGACGTAGAATTCTATGACATCAGTGCCAGTAAGTGTGACATAGTGTTCTCCCTGTCGGAGCTGGAGGCCAACGTGGAGGTGATGGACTACTGGACAGATGGTAAGAGAGGAGTGTACTCCATTGGGGATGCCAGTGGCACCATATACATCTTTGTCTCCTCTGATGTGGTCCATAATGGCCTGTTCAACAGTGCTGCCTTCAAGACAGGAACAAACTATCGCATCCCCGTGTCAGCCCTGCTCAAAAACACCTCCAGCTCATTTCTCTGCTTTCGAGTCCCCAGCCACAATGACTGGATCCACCAGATCCGCTACATCCCAGAGTTGAATGCCATCGCCACCTGCTGTGCGGCAGACCAAACTTCCATGATCCTGACCACGCTGCCCCACTCACGCAAGTGTAAAATTCAAACTGCAAACTTTCACATGCAGAAGGGAATTCTGTGTTTTGACTACTCACCTGAGCTCAACGTTCTGGTGACTGGATGCTTCGATCGGGTTGTGAGGGTCTGGAACCCCTATGTGACCAATCAGGCCACATCACAGATGAAAGGTCACTGCACCATCATCACTCACATCGCTGTCAACGGCAGAGACAACAAGATCATCAGTGTCTCCAAAGACAAGAATGTGCGGGTGTGGGACCTGCAGGACAGTGTCTGCCTCCAGAACATCCAATCCAGGAACGTCAACATGGGCTGCTTCCCCATCACCAGCACCTACTATAACCACACCAGTAACACCATGGTGATGGCTACGTACCTAATTGGAGTTCTTCGAGGGTCTATGGAGGATGCAAACTGCTCTGTACCCACAGCTACAACATCACATGAACAGCCACTCTGTGCTGCTCTCTACAACTCCAACTTCAAACAGGTGGTAAGTGGGTGCCATGCGGGCGTGGTCAGTGTGTGGGACATCCTGACGGGGGAGAAGGTAATGCAGTTCCAAACGACCCCTGAGCGACCAGTTGAAGTCACTGCCATGACATTCGACGGGCCCAAACGCCGCCTCATCACCGGGTCTAAAGACGGCACCCTGCGTCTCTGGAACTTCAACAACGGGGCTCTCCTTTCTGAACTGCCCCTGGTGGACAGCAATGAGGTTACAGGGATTCTGTACATCAACGAGAGGATTTATGTTTCAGGCTGGAGCAAACGGGTCATGTGGTATCTGGACAATAAGGAGGAGGATAAGATGGAGCACCGCGTGTGGAACCAGTACCACTCAGACGACATCTATTCCATGCACGCCCACGGCAGCAAGATGCTGGTGACTGCCTCCTACAGCGGTGATGTCATTGTCTGGAACATAGATTCAGGGCAAGCCTTCTGCCGTTTCAACGCTAGCGAGAGCCCACTGCCCCTCTTACCCATACGGGTGATAGAGAAACCAGGCCAGGTGGTGACTGTTATGAGTCCAGACGGTTTGGGGAAAGAGGATGAGGACGATGTGTGGCTCCGCTCTATGGTGGAATTTCTTGAGACCGTGAGCCAGACTCTCAACCCTCAGGCTCGTCGTCCCAGCTGTGCCAACCCTGCCCACACCAACGTCATACagCAAATCAATCAAGCCCGGCGTTGCAGTATTCCAGAGCCCCCTCCTGATCCTGTGATTCAGGGGCCTCGCGCCAACATGCGGCATGGCCGGAGGGGTAGCATCTCGGCTCCAGTCTCTGCTTTACTGCCCCAGCCGGTCACAGTCTCCATGGGTAGGCGGACGACACTGCTGCCCAGACGCAAGAGCAAAACCATCAACCTAGACGAGCTGGAGAAGCCTCGGTTTGCAGTGGAGAAAGTGTTGTTTCTGGCCACCCGTGAGCGTAGCCCTGACACGGCCATCCTCCTGACCAGCTCAGCAGACGGCTACATCTACGCCTGGTCTATCGGCCGTAACGGAGGGCTGCTGGGGAAATTCCGTGCCGTGCATAACAAGGGGCCAGTCATCTGTGCCATGTTCACTGACAGACAGGACCAGATACTGCTCACTGGAGACAGCAACGGATACATCACGCTGTGGGACATTGAGAAGTACTGTTACCGTATGAGGGGTGGGGGGGCTGAGGAGGAATCATCCAATGAGGACTCTCTGAGGTTGCCTCAACTCATACCTCCCTACTGCAAAGTGGAGGGACCACGGAGGCTGGTGGTGGAGCAGGACAAAGAGATTTTGCAGGGATGGAGTGTGTCCCTGATCCCCCCTAGGCCCCTGAGTTCCTGGCGCTGCCACCTGAAAGGGATCGTTCATCTTGAGTATGTGGAGCGTTTCCGCCTCATCGTCACAGCCAGCCTGGACTGTAACGTACGTCTGTGGACCACCGCTGGCAGATACATCGGTACATTTGGGCAGGGCCTGTGGCGGGTGGGCGATCCCAAGGCCCTCCACACAGAGCTCCCAGTGGACCTGAAGAGGATGGGGTCATGTCAGACACTTAAAGTCCTTAATGAGGGGAAGTACCCGCACTGGAGCTGTGCCAAACGCATCCTGGAGGGCCTGACTGCACAGAAGAGTCAGCAGTCGACAAAGTTTGGTGGGGTCACAACGCAGCTGAGGGAACTGGTTCCTACCGACCCAAGGATCGTCAAGTACACCGACGAGCAGATTGAGAACACATGGAGACTGTGGCAGGAGAAGGGAAGGCAGACCAGCAGCATTTTAGGACGAGCATACAAACAGAAAGTGAGACATCACCTTCCGTCCTGTACCCCTGACCTCCAGACAACCTTCAGCAGTCAAGAGCAGTTGAGGGTGTATAAGGCCTTGCCCTACAGCGTTCTGCGGCCCGTCACCCTGCCCCCTGTCCCAGAGCTTCTGAAGGACCATCAACACAGGTTAAATGAGGGCACAGACACTGCCGCCAAGCAGAAGAGGAGCACTAAGCGCCGgccccactcacacacacgctaCCTGGCTGCTCCTCCGTGACCAGCAACTCCCAGGTGCTAATATGACCCTCGCTGATTACATTCAGAAATAAAAATGAGTCTGGCAAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1577180 lncRNA downstream 33062 46284545 ~ 46284782 (-) True G1380722
TU1577179 lncRNA downstream 40357 46277225 ~ 46277487 (-) True G1380721
TU1577178 lncRNA downstream 40806 46276708 ~ 46277038 (-) True G1380720
TU1577177 lncRNA downstream 42910 46274086 ~ 46274934 (-) True G1380719
TU1577139 lncRNA downstream 64705 46248735 ~ 46253139 (-) True G1380682
TU1577200 lncRNA upstream 8220 46338846 ~ 46339083 (-) True G1380741
TU1577253 lncRNA upstream 89541 46420167 ~ 46420441 (-) True G1380786
TU1577234 lncRNA upstream 109434 46440060 ~ 46517372 (-) True G1380768
TU1577285 lncRNA upstream 156524 46487150 ~ 46548798 (-) True G1380817
TU1577306 lncRNA upstream 193772 46524398 ~ 46530425 (-) True LOC110492758
XM_021567201.2 mRNA downstream 24405 46287237 ~ 46293439 (-) True LOC110492742
XM_021567202.2 mRNA downstream 25004 46287237 ~ 46292840 (-) False LOC110492742
XM_021567200.2 mRNA downstream 33739 46280328 ~ 46284105 (-) True LOC110492740
XM_021566170.2 mRNA downstream 152283 46151597 ~ 46165561 (-) True LOC110492134
XM_021566168.2 mRNA downstream 183098 46129671 ~ 46134746 (-) True peds1
XR_005036385.1 mRNA upstream 228 46330854 ~ 46336854 (-) False LOC110492745
XM_021567208.2 mRNA upstream 228 46330854 ~ 46337480 (-) False LOC110492745
XM_021567207.2 mRNA upstream 228 46330854 ~ 46337487 (-) False LOC110492745
XM_021567209.2 mRNA upstream 228 46330854 ~ 46337487 (-) True LOC110492745
XM_036945815.1 mRNA upstream 10454 46341080 ~ 46365341 (-) False LOC110492746
TU1576851 other downstream 612391 45705110 ~ 45705453 (-) False G1380431
TU1576791 other downstream 690146 45618217 ~ 45627698 (-) True LOC110492109
TU1576625 other downstream 997466 45315947 ~ 45320378 (-) True slc48a1a
TU1574785 other downstream 1353362 44918013 ~ 44964482 (-) True plxna2
TU1574744 other downstream 1764297 44553014 ~ 44553547 (-) True G1378530
TU1577246 other upstream 85934 46416560 ~ 46419878 (-) False LOC110492748
TU1577247 other upstream 85934 46416560 ~ 46419878 (-) True LOC110492748
TU1577316 other upstream 268071 46598697 ~ 46601375 (-) False LOC110492764
TU1577317 other upstream 268071 46598697 ~ 46601375 (-) False LOC110492764
TU1577318 other upstream 268071 46598697 ~ 46601375 (-) False LOC110492764

Expression Profile