RNA id: XM_021567207.2


Basic Information

Item Value
RNA id XM_021567207.2
length 1707
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110492745
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46330854 ~ 46337487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTAATGTTCAGCTACCTTCTAACCGTACAACAAGAGCCAAGAGGAAGGAACAAGGCACGTAAGAATTAAAACGCCGGTGAACGGCGAGAAAGTTTGGTGTATCCACAAGTTTTAACCTTTTTGTAATTTGATTCAACCAGTGGAAGACTAAGAAAATCTAGAAGATGGCTGTGAACGTTTACTCCACATCTGTGACCGGCGACAACCTTAGTCGCCATGATATGCTTTCTTGGATCAACGAGTCTGTACAGATGAACTACGCCAAGATTGAGCAGTTGTGCTCAGGTGCCGCTTACTGTCAGTTCATGGACATGCTTTTCCCTGGATGCATCCCTTTGAAGAAGGTAAAATTTCAGGCAAAACTAGAGACTGAGTTCCTCCACAACTTCAAACTTCTGCAGACCAGTTTTAAGAAGATTGGGGTTGACAAGATCATTCCTGTGGATAAATTGATAAAAGGCAAGTTCCAGGACAACTTTGAGTTTGTGCAGTGGTTCAAGAAATTATTTGATGCCAACTACGATGGAAAGGAGTATGACCCACTCGGTGCTCGCCAGGGCCAGGACACTGCTCCTACGCCCAACCCAGGGCAGGTCGCATCCAAGCCAAGAAAGCCCACCACTGTACAGTTCCACAGCTCCCCGCCTCTTATCAGACCAGCGGCGAGAGTCGCTCCCACGAGGTCTACAACGGCAGTAACCAAACCCCCGCCCAGGTCAGCAGGGAGTGCTTTGCGGAGGCCCGGAGGGGCAGAGGACGTGGAGAGGGTGGAGCTAGCCCAGGAGGTCAGTTCCCTGAAGGCCACTGTCCAggacatggagaaagagagagacttttATTTTGGAAAGCTGAGGTCCATTGAGGTCATCTGCCAAGAAGTGGATGGCGAGGCAGATACGACGATGCAGAAGATTATGGATGTTCTATACGCCACTGATGAGGGGTTTGTTATTCCTGATGCTGAAGGAGAAGAACCAGAAGAGTTCTGATGAAAATGGACACAACTGCAGTTCATACCTTAATCACACGCttttcaatacacacacacacaagtttgcATGTGCAACGTTCATACGCACTCTTTGGGTCTAATGAACATGCACTTACTCACACTGTGGATTAAGTTGTCTCTGGATTATACACTGCCTGCCACCTTGGTCCAAGTCTTTATTGGACcaagtgtttttttgttttttctgGACCATAAAATACATTTCAGAGACCCTGCTGATCCAGCCACCAGAGAAGAAGAACCCTGGATAAAATTCCAATGGGTCCTTATTTTCTGGGGGTTTTCTGCCTTGTTCTTATTCTGGCCTTTTCTGTGCCTTTCAATTTAGGCCTGTTACTTTTGAAATATGTTCAGGTTGTCTTTTTATTCCTTATATATTTCCAATTGACCTAAACAGTACTGTACTAGATTATTTTGATATGATATTTGCAAATATGAGTAAttcttaaatatatatatgaatGTTTACTCTGCCAATTGAAATGATTGTAATTTTTATGGTATGTTTACACACATTCATTATATACTTAAGAGTTAAACATTTGTGGTTTAGGCGATCAGCAtttgtatttagttttttttttatctccgcAGGTATTCATCACATTACTTTTTTGATTTTTCAATGAAATTAAGTGTTTTTATTGAGCACCTTAAATAAAAAAAGACTGTACTTCTTACTTAAAAGCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1577180 lncRNA downstream 46072 46284545 ~ 46284782 (-) True G1380722
TU1577179 lncRNA downstream 53367 46277225 ~ 46277487 (-) True G1380721
TU1577178 lncRNA downstream 53816 46276708 ~ 46277038 (-) True G1380720
TU1577177 lncRNA downstream 55920 46274086 ~ 46274934 (-) True G1380719
TU1577139 lncRNA downstream 77715 46248735 ~ 46253139 (-) True G1380682
TU1577200 lncRNA upstream 1359 46338846 ~ 46339083 (-) True G1380741
TU1577253 lncRNA upstream 82680 46420167 ~ 46420441 (-) True G1380786
TU1577234 lncRNA upstream 102573 46440060 ~ 46517372 (-) True G1380768
TU1577285 lncRNA upstream 149663 46487150 ~ 46548798 (-) True G1380817
TU1577306 lncRNA upstream 186911 46524398 ~ 46530425 (-) True LOC110492758
XM_036945814.1 mRNA downstream 228 46317844 ~ 46330626 (-) True LOC110492744
XM_021567201.2 mRNA downstream 37415 46287237 ~ 46293439 (-) True LOC110492742
XM_021567202.2 mRNA downstream 38014 46287237 ~ 46292840 (-) False LOC110492742
XM_021567200.2 mRNA downstream 46749 46280328 ~ 46284105 (-) True LOC110492740
XM_021566170.2 mRNA downstream 165293 46151597 ~ 46165561 (-) True LOC110492134
XM_036945815.1 mRNA upstream 3593 46341080 ~ 46365341 (-) False LOC110492746
XM_036945816.1 mRNA upstream 3593 46341080 ~ 46365341 (-) False LOC110492746
XM_036945817.1 mRNA upstream 3593 46341080 ~ 46365341 (-) False LOC110492746
XM_036945818.1 mRNA upstream 3593 46341080 ~ 46371222 (-) True LOC110492746
XM_021567213.2 mRNA upstream 79975 46417462 ~ 46419996 (-) False LOC110492748
TU1576851 other downstream 625401 45705110 ~ 45705453 (-) False G1380431
TU1576791 other downstream 703156 45618217 ~ 45627698 (-) True LOC110492109
TU1576625 other downstream 1010476 45315947 ~ 45320378 (-) True slc48a1a
TU1574785 other downstream 1366372 44918013 ~ 44964482 (-) True plxna2
TU1574744 other downstream 1777307 44553014 ~ 44553547 (-) True G1378530
TU1577246 other upstream 79073 46416560 ~ 46419878 (-) False LOC110492748
TU1577247 other upstream 79073 46416560 ~ 46419878 (-) True LOC110492748
TU1577316 other upstream 261210 46598697 ~ 46601375 (-) False LOC110492764
TU1577317 other upstream 261210 46598697 ~ 46601375 (-) False LOC110492764
TU1577318 other upstream 261210 46598697 ~ 46601375 (-) False LOC110492764

Expression Profile