RNA id: TU1577246


Basic Information

Item Value
RNA id TU1577246
length 1598
RNA type TUCP
GC content 0.42
exon number 5
gene id LOC110492748
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46416560 ~ 46419996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAGCACACCAGAAATAATTTGAAGTTTTCTATTCGAGAACATACCACAAATGGGCAAGAGTAGTCGTTTAGCTTAATTCACCGAGTATTGCCAAAAGACCCCGCCTTTGGTGTTTTTCAACATCATTCAACGCCAAATAAAAAGGTTTTCCATCTTTGAGCGGAGTTAAAGAGAATGGCATCAATTCCGTCCACTGGCTCTCTCATCGCCACCCATGATTACTATAGAAGGCGCATAGGCTCCACTTCTAGCAACAGCTCCTGTGGCAGTTCTGAGTACGCTGGTGAAGTCATTCCACACCCCCCAGGTCTGCAGAGACAGGACTCTGGTCACTGGTGGTCTTCTTTCTTCTTCCCAAACAAACAGAACCAGCCTGGCAGTATGATTGGATCTGAACAGAAGAGTGGAACGTACACAGTGACCAATGGGCAGGTGGCGTGTATCGCCAGGGAGATGGTGTTGAAGAAGCAACTCAGTAGGCAACTCAGTGAAAGCAGTAACTCTGGGAAGGTGGAACAAGGGAGCCCACCACCCTCCTAATTCCATCTCTTCTCCAACACCCCACACCTTGAGTTTAGTTGGAGATTGAGGCAGCAGATTTTACAACTTTTTAGTGATTGAGGCTGCTTTTCCTCCCtctgtgtttatatatttttttataaaagacAAAAGGATTTCTCTATCATGCTTTTTGCTGTTGAATAAATCAAAATTCTTGCAATGAATACTTTGTCTTAATTGTATTCCCTATTCAAGTGACTAAGTCCCTAAATATTTGTTTGTCTATAACTATAGACActgtaccagtcaagtttggacacctactcagtacaagagatgtcactacagtccctggtttgaatccaggctgtatcacatctggctgtgattgggagtcccatagggcagtgcacaattggcccaggtttgccctgggtaggctgtcattgtaaataagaatttgttcttaactaacttgcccaGTTAAAGGTTCAATTGTTTACAAAATGCAGGgttttgaaataacacataacacacactaaaccaagaaagtgttaaacaaattcaatGATTTGAAATTTttcaaagtggccaccctttgccttgacagcttttcacgctcttggcattcttaaccagcttcatgtctttaagttgtggaatttctttcctcaatgcatttgagccaatcagttgtgttgacaaggtaggggtggtatacagagagCCCTATTTAGGGGAAAGACGCAACAGCTCAAACAGCACCAGTTCATTCTCCGACCTTgtcggaaaatttcaagaactttgaaagttaaGTGGAGTCGCAAAAACTGTTCAGATGAgcctgcgtgaatcaggccttcatggtcaaattgctgcaaagaaaccactaaaggacaccaagaagagactcgcttgggccaagaaacacagatttttggttccaactgccatgtctttgtgagacacgagtaggtgaatggatgatcacGTGTGCTTTGCTAGTGAACTTGTcggtgatttattttgaattactATGTCATTCCATTGttttatttcatggttttgatttcactattctacaatgtagaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1577200 lncRNA downstream 77477 46338846 ~ 46339083 (-) True G1380741
TU1577180 lncRNA downstream 131778 46284545 ~ 46284782 (-) True G1380722
TU1577179 lncRNA downstream 139073 46277225 ~ 46277487 (-) True G1380721
TU1577178 lncRNA downstream 139522 46276708 ~ 46277038 (-) True G1380720
TU1577177 lncRNA downstream 141626 46274086 ~ 46274934 (-) True G1380719
TU1577253 lncRNA upstream 289 46420167 ~ 46420441 (-) True G1380786
TU1577234 lncRNA upstream 20182 46440060 ~ 46517372 (-) True G1380768
TU1577285 lncRNA upstream 67272 46487150 ~ 46548798 (-) True G1380817
TU1577306 lncRNA upstream 104520 46524398 ~ 46530425 (-) True LOC110492758
TU1577382 lncRNA upstream 182237 46602115 ~ 46603005 (-) True G1380895
XM_036945818.1 mRNA downstream 45338 46341080 ~ 46371222 (-) True LOC110492746
XM_036945815.1 mRNA downstream 51219 46341080 ~ 46365341 (-) False LOC110492746
XM_036945816.1 mRNA downstream 51219 46341080 ~ 46365341 (-) False LOC110492746
XM_036945817.1 mRNA downstream 51219 46341080 ~ 46365341 (-) False LOC110492746
XM_021567207.2 mRNA downstream 79073 46330854 ~ 46337487 (-) False LOC110492745
XR_005036386.1 mRNA upstream 3274 46423152 ~ 46439813 (-) False LOC110492750
XM_036945822.1 mRNA upstream 3274 46423152 ~ 46439814 (-) True LOC110492750
XM_036945821.1 mRNA upstream 23045 46442923 ~ 46448034 (-) False LOC110492749
XM_021567217.2 mRNA upstream 23048 46442926 ~ 46448009 (-) False LOC110492749
XM_021567215.2 mRNA upstream 23048 46442926 ~ 46448034 (-) False LOC110492749
TU1576851 other downstream 711107 45705110 ~ 45705453 (-) False G1380431
TU1576791 other downstream 788862 45618217 ~ 45627698 (-) True LOC110492109
TU1576625 other downstream 1096182 45315947 ~ 45320378 (-) True slc48a1a
TU1574785 other downstream 1452078 44918013 ~ 44964482 (-) True plxna2
TU1574744 other downstream 1863013 44553014 ~ 44553547 (-) True G1378530
TU1577316 other upstream 178819 46598697 ~ 46601375 (-) False LOC110492764
TU1577317 other upstream 178819 46598697 ~ 46601375 (-) False LOC110492764
TU1577318 other upstream 178819 46598697 ~ 46601375 (-) False LOC110492764
TU1577319 other upstream 178819 46598697 ~ 46601375 (-) False LOC110492764
TU1577320 other upstream 178819 46598697 ~ 46601375 (-) False LOC110492764

Expression Profile