RNA id: XM_036947052.1


Basic Information

Item Value
RNA id XM_036947052.1
length 2579
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110492137
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 47081938 ~ 47089563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCTTTGTGTGCATTTAACACATTGTAGAAGGCAGAAGAGAAACCGCCTGCGTCATTTCAACTTGTTAGTGCCTGTTTGAGGAAGAGGACAGCCAGGCACATCAATGATCAGCTCCTCTTTGGTACTAGGTGGATATTCTGAGAGGGAACTATGAGTCTGGGATCTAAGTCTAAAGGAGTTCAGGGGTACAGTCCCAGCTCTCTGCTGAGCCCACAGGAGAATGAGAGGCTGGAGGACCTCCTGGGGAGGAGGTGTGCTtccCTGGCCACGGCTGTGGTGCAGCTGTATATGGCCCTGCCACATAGTCCCACCTGCTGGAGCCTGCAGCACACTGGGGTGGCCTGCTTCACCAAGGACAACCCTCGTCGCTCCTACTTCATACGCCTCTTCGATGTCAAGAAAGGACAGCTGACCTGGGAGCAGGAGCTCTATAACCAAATGATCTACCACAGCCCCCGACCCTTCTTCCACGCATTTGCTGCAGATGACTGCCAAGTGGGGCTGAACTTTGTGAATGAACAAGAGTCTGAAACATTCCTATGTGCAGTGGAAGACAAGATAAACCAGAGAAACCGTCAAGTCTCAGAGAAGAAGCAGCGCCCCCTGCCTTCCAATGACAGAGGTAAAGGACCTGGGAGTCCCGCTTCTCCCTCTGTGGCAACCATAGACATCCAGATCCCAGACATCCAGGCTTCACGCTACCGCTCCGTCACACCTGTGCCTGCTCCTGCCtttgtcagtaaggggaaaaagGACAAGAAGAAGGACAAGAGGAAGGGCAGTAAACTCTCCAAAGCAGACATTGGAGCACCCAGTGGGTTTAAACACGTGAGCCATGTGGGCTGGGATCCCAACAACCTGGACCCTGACCTGAAGAAGCTGCTGTCCTGTGCTGGGATCAGTGAGGCTGAGCTGAAGGATGAGGAGACCTCCCAACTCATCCAACAAGTCATCGAGAACTCAGGCGGCATGGAAGCAGTCAAAAAGGCCATGCACACTGATCCTGAGCTTCCTCCTGGTAGACAGGGTTCTCTACCTCCCGTACCAGGcagctgttcctcctctcctgccccccctcctccacgGGGGGGTCGCTCCGGCCCCCTGCCCCCTCCCCCAGGACAGCCAGGGCGAGGACCACCCCCCTCCCATCCCCCTCCATCACGTGGAGCCTTGCCACCTCCACCCCCCTCAAGCGGCCAAGGCGGACTCCCACCCCCTCCACCCACTGTGTCCTATACTTCTCCTCCCCCTGGCCACCAGCGCTCCATGcctgcccctcctcctccacctcctccaccgcCTCCCCCAGCCCAGAGCACTGGAGACTTTCCTTTTCCTCCACACCCCTATAAAGGTCACCCATCACCTGCTCCTGCATCTACAGGAGGATGTgaaggaggtggaagaggagctCTGCTGGACCAGATCCGCCTGGGGAGGAAGCTCAAAAACGTCACAGACAGTCCTGAGTCACCTCCGCCTGCTGAGACAGACTCAGAGGGCATCGTAGGAGCTCTGATGATGGTCATGCAGAAGAGGAGTAAAGTCATCCACTCCTCTGATGaaggtgaagaagaaggaggttatgatgatgaagatgacgaTGAGTGGGACGACTGATAAGTGCATTCCATCCTGTATTATTTTCCACTCTGTAACCATGGACTCAACAGTCTGGTTGATCCGGTTAATCTCTTTTGTGTTGGTGTTTTTGTATCAGTTGCTGACTGGAAGGTGACTCACGAAGATTTACATCAGAAGAATGCTACAGATAAGGATTGTGTGAAAGTCCCAAATGTGAGAGAAATCAACGGAACGTAAGACAGAGAAACGATTGATGGGATCACATATCTTTATATTTGCCGTTCAAACGTTTCCAGTGTAGGACTCATGCTGAGTATGTACAACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTGCTGTACTACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTGCTGTACTACACATTACAGTATGTTGCTGTACTAGACATTACAGCATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTGCAGTATGTTGCTGTACTACACATTGCAGTATGTTGCTCAATATCATTAGAACATATGGTGAGGTCTTCTTCACAGTCTTCTTTATACCTGTTCCCATTAAAAGTGACAATTTGATATGGCTGGAATGTAGTATTATAATGTAATACAGAGATTATGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1577634 lncRNA downstream 20973 47058843 ~ 47060965 (-) True G1381123
TU1577623 lncRNA downstream 37114 47044613 ~ 47044824 (-) True G1381112
TU1577617 lncRNA downstream 56599 47025081 ~ 47025339 (-) True G1381106
TU1577574 lncRNA downstream 66913 47013613 ~ 47015025 (-) True LOC110492780
TU1577609 lncRNA downstream 71444 47005351 ~ 47010494 (-) True G1381100
TU1577662 lncRNA upstream 275 47089838 ~ 47091721 (-) True LOC110492139
TU1577765 lncRNA upstream 122451 47212014 ~ 47212221 (-) True G1381233
TU1577768 lncRNA upstream 125824 47215387 ~ 47215591 (-) True G1381236
TU1577773 lncRNA upstream 132548 47222111 ~ 47222320 (-) True G1381241
TU1577777 lncRNA upstream 157592 47247155 ~ 47247489 (-) True G1381245
XR_002469080.2 mRNA downstream 39093 47040588 ~ 47042845 (-) True LOC110492784
XM_021567264.2 mRNA downstream 47237 47029557 ~ 47034701 (-) True LOC110492783
XR_002469079.2 mRNA downstream 66877 47013585 ~ 47015061 (-) False LOC110492780
XM_036945842.1 mRNA downstream 107355 46945241 ~ 46974583 (-) False LOC110492777
XM_036945843.1 mRNA downstream 107355 46945241 ~ 46974583 (-) False LOC110492777
XM_021566184.2 mRNA upstream 239 47089802 ~ 47100841 (-) False LOC110492139
XM_021566185.2 mRNA upstream 252 47089815 ~ 47100846 (-) False LOC110492139
XM_021566182.2 mRNA upstream 252 47089815 ~ 47103223 (-) False LOC110492139
XM_021566183.2 mRNA upstream 252 47089815 ~ 47103227 (-) False LOC110492139
XM_036947084.1 mRNA upstream 276669 47366232 ~ 47383564 (-) False LOC110492147
TU1577528 other downstream 202792 46878611 ~ 46879146 (-) True G1381036
TU1577381 other downstream 320472 46759287 ~ 46761466 (-) True LOC110491077
TU1577402 other downstream 413344 46657467 ~ 46668594 (-) True LOC110492767
TU1577321 other downstream 480563 46598697 ~ 46601375 (-) False LOC110492764
TU1579060 other upstream 335749 47425312 ~ 47448865 (-) True LOC110492148
TU1579359 other upstream 853816 47943379 ~ 47946222 (-) True G1382721
TU1579549 other upstream 1192650 48282213 ~ 48312958 (-) True G1382894
TU1580193 other upstream 2094745 49184308 ~ 49196326 (-) True LOC110492187
TU1581430 other upstream 2513555 49603118 ~ 49719539 (-) True LOC110491086

Expression Profile