RNA id: TU1579055


Basic Information

Item Value
RNA id TU1579055
length 6157
lncRNA type sense_over
GC content 0.40
exon number 7
gene id LOC110492148
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 47409235 ~ 47908274 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGTTCCTCCAGGCCTCCAACAGCAAGGTGGAGAGAGACCTGGCCCAGCTCACCCTGTCCGACCCCGAGCAGAGGGAGCTGTACGAGGCCGCCCGTCTAGTCCAAACTGCCTTCCGCAAGTACAAGGGGCGCCCATTCAGAGATCAACAGGAAGTAGCTGCGGCCGTCATTCAGCGTTGTTACAAGAAGTACAAACAGCTTACATGGATAGCCTTGAAGTATGCACTTTATAAGAAGATGACGCAGGCCGCCATTCTTATCCAGAGTAAGTTCCGCAGCTACCAGGAGCAGAGGAAGTTCCAGCAGAGCAGGCGGGCGGCCGTGCTGATCCAGCAGTACTACCGCGGCTACAAGGAGTTTGGCAGGCTCAGGCCCCACCGCAGAGGAGCCGCCGCCGCCCTGGTGCAACATAAACTCAGAAGTAGTCTGCTCTCCAAGAGGCAGGATCAGGCTGCCAGGAAGATCATGCGGTTTCTACGCCGCTGCCGCCACAGCCCCTTGATGGACCATAGACTGTTCAAGCGGAGTGAACGAATCGAAAAGGGCCAAGGAACATGAGAACCCTCAGAAGAGCCCCCTCACAATGTGAcatcactctcctccttttctTTCCCCCCTTTGTACCCAAGACATTTTACAAGAGAAGAAAATAAACAGTTCAGTGAAAACACTGCGATTATTATTACAACTATGACAGCGTGACTGATTCCACTTCGATTACAtgtacaacaacaacagcatTTTTCACGTTTATCTATCGTTGTGTATGTTGGAGAGTGGCAACTTCTTCTGTAGAATTCTAAACTAAAGGAGAAGAAGCTGTGGGGGGCAGAACATTCGCTTCATGACATTTTTTGCACTTTTTCATGGATTGCTTTGTCTTTTTGGGAGTATCGGAGTCTAGGTTTTTAGATGGTAAAGGAAGAGGAATGTTGGACATGTGGAAAAGGTCCCTGCCACCAGTGGATCAAACCAAAAGGATAAGATGGAGGACAGCTAGGATGGAGGACAGACGCCAACCAGAACATAAGGAAACATTACAGAAACACATTGGGACTTGGCTCTAATTGTATTtcatcatttttttaaaaaagtGAACTGATTCATCCATTTGAAGGAGAAAACATGTCATCTAATGAACCAAACATTCTCGGTAATATATTGATCCATTTGCAAACTTACTCTCCCTATCAACAGTCGGTGAATACATTCAGTATAGTAACTGGAAATAGATCAAGCGTCCTTCTGTTACGCTGTGCTCTACTCCGCCAGTCAGTCCGAAGGGGTGGGGCTGCATATGAATGTAGGAGGGGTGTGAGAAGGAATGGGCGGGGCTTATTAAAATAATGACTTATTTTGTTATCTACGTTTAGGGGGCACTGTGAGGCAAGAGATAGGGGATTCAatggtgtgtgtttttttttttttaaatatatgtttAATTCCTCTTTGCTTGAATCTGTTCCGTGCTTATACCCATTACCGGTATAACTGACTTGTCTCCTAAAAAATGATGTGTTGTCAATTTTATCAAATGTGCATGCCTATGGGTGAAGGTCTTCGCCTGCGTGCTTGAAATTAGGTCTGTAACCTCTGTTTTTCAATGTTTTGCGTTTGTCTTCATGTTAAAATGCAACAGAGTCTCCCATGTACCCACCTACTTCCCCAAGAGTCATTCATACCCTCTAGTTACTGAATATTGTCCTCTTGTTTTCTTTTTCATTTGCCTTATTTGTTTCCTCGGTATTCTAAAAAGAAAGAAAACTTGCCTCTTTTGTGTTGTAATGATTACAGTCATGAAGGTTATTGTTGTTCTTTTTAAATGAACTTCAGGGCCTGTGAGGGCTTTTGAGGGGAAGATCACATACATTGCCTTGACATCTTAGAGATTCTTCGAGGGGTCCCTAAGCTAGTCCCAAAATAGGGGTTAGACAAATCCATATTTTTGACAATTGAGCGGTTTCTGTATATAAAGAAGGCTGAAGGTACGTAGGGAAAAACATTTACCCAAAAGGGGATTGTATTTTagaaatatattattttattcatTAAAAAGGGGTCAAAAACAGGTACGAGACAAAAACAGAATATTTGTATAGTTTTGTTTGAATGCCTAAGAAGTATGGTTGTATTGATTGTATATAGTGTAAATACCTGGGATAAAAATGAGCTATGTGCATGAAAAACATGaacaaaggttaaaaaaaaaacactaaacaaaagcAGTAGTGGCTATGCTCTGTAAAATGATTCTAACTATTTCACTATAagagtattttattttattttgattgttCTTGAGAAGAACATTTTGCTAAAGCATGACATTATTGCGAATactaaaaagtttaaaaaaaatatatataatgtatttaGAGATAGGAGAAATCTGCAAAATGATCTTAAGACATGTATGGttatgtttacatttttgttttgggCTACCAAGAATCTTTTGCCAATGGTGCCAAGTAATGTGAATGCTATATTGCTTAACAAGAGAATTAAGTTCATCTTATCAGAACAGATAATCATACAATGAAATAGACACTAGCATTGAAGACCACAAGGTCCCATCACGACTGGCAGCGTATCACAGATAGAGAGGTACACATTGCAGAGGGAGAAATATTTCTACAGCAACTTTTAAGTCTCCTGTTTCTCACCCATTATCGCACGTCAGAACAACCCAAGATTTGTTTTTGTTGCCATCATCACCAAATACACAGGGATCACTTTGTCAGTTACATTTCGAATGCAAAAGAAAGGTGTGCCGTATGATCCGTTATCCGTATGAGACAAGGGTGGTGGTGTCAATGTCTCTTAGCATGTTCGTATGGATTGTGTTCATATAAAGATTGTAAATGGCAACCGTGTCTATGGGAATCTCAgccctgttttttgttgttgttgtttatagtTGAGGTTGATTGAACATGTGTTTCATAGGACAACTCACGGGTGATGAAATAGACGATATCCAACTGCTGACACACCAAGACGTTTGTTTTTACGTTTTGGGCTGGAAGCTTAACTTTACCAAGGCCTGTCAGGGTCAGGACAGACCAGAGTCAACATGTAATGTGGCCAACAGTGAATGATGTGTAGCATCGCTGGCATTCTTTGTAAAAGTCAACGAGTCATTTGCCTGCAGAAGCAACACTTGAAACAATCGAAAGTGCAACAACAGCAAAAAAGAACGGATGGGGTTTTATGATGAAACACATGAACCATTTATGGATCGTTGCAGCTAAGTCAATGAGCCAAAAGGAGTGTAAGCGTAACAAGATGCACCACTACTATTATAGCAACTTCCGAGGAAGAATACAATGTATGTGTCTGGTTCATAATGGGGTATGTGAGGGCAGTGTTTGAAAGATGATGAAATGAGATGTGGGAAGTGGGAACAGACCCATTGATACCAGTTGATTATACTGTATCTGTGAATGCATGATAGAGACTATCCAATGGTATTCAATCCTAGGCCATAAGTGTCTGCTGGTTCTTGCAGTTTTGCCGATATATATTCTATTCCTATAAGAACATGCCATTGGAcaattacattgtgttgttttaaaTGCTGAAATGCATCTCAGACACCGTTGGCTGTTctgatgtttttgtttttctgtacTTCTGGGTTTATTTCTCTGTATGTTTGTGTTTATTTCACAGAGACTTGATATGTAAACCTATTTTCAGAGTGTTTATGTAGAAAGTGCCTAATCATATCCTGATTGATCGCACAAAGCCAATGTCAGGAAGCATGCAAGGTACCTAAGGAGGAAAACATGGCTTTGGAGATACCAATAGCAACTGATCCATAATTCTTTAGGACTACTGTATATCAAGTACATACAATATATCAACCCAAAACCATCACCAAAATCAGTCCAGTGACAGTGTTCCCTTACCCCACGGAGCGCATTCCATCTTGTCAACATTCTAAGCGTTTTCATTTTCTATTGGAACTGCCTGTTGAAACCATGAGAATTAGATTCCATAACTTCTGTGGTTTTATTGCCTTGCATTCATCATTCTGGTAGTGGTAAGAATGCCAGCCAATACACTGCTGTGGCCATATGAGAAGGTTTTATTATGCTTGCATGATATAGTTAACTGGGTGACTGAACTGCACCCAAAGCATGCTTATTTTTCTAGAATCGGTAGTTAGACTTTTAAAGACTTGCTGTTCTGTAAAACGAAGAACGTTGGTTTGACGTGTCACAGAACTCTGAAAGACGGAGGGCATGTGattggagggaagaggagaaccCTTAAAATACAAACTATGATCAATCTGCAGTATTTACTGACCATATTTCCAGGGGTAGCATGAGGGCAAGTTTTTCTAGAAGCAAGTTGAAACTTTTTTTTAACACATTTGATTTTTCATTCATTTGGATATAGAGATGGTGTGCTCTCAACTTCAAATACCTGACCAGTTCGGACACTCTTTTGGCAGTATACTGCAAGTATTATACtagacaacaatacacacacacacacaggcaacagTACACTGCACTGGACATATCCAGATATGCAGATAGGTATGTCAAGGCACAGTCAGTCTCACTTGTACACAGTTCAGCAGATGGAGCTCATCATTGTGTTATTTTCCTAGCCTGCTCCTAGTCCTAGGGAATGGCTCACCTCCCTTCCGTCTTTTACTCAGGGTGCCAAAATggggaggaggaagtggagcAGGACACTGATTGGTGattcactgcagagagagaggacatactgTATTGAAGTAGGATAGGAAGATGCAACACCCCTCAACAGAGCTTTCTGGTCAAGACAGGCAAAGGATTACTATGATCCTGGATACATTACTGTTATCTATTTCCTCTCAGATAAGTAAGCTGAACTGAGGAGAGATGTAAGGACACTAAATCAAAAATAGGGGACACAAATCATTGTAGTGTAGCTAATTATAGTTGAGACAAGTTGATCACAATTGACAGTACGGTCAATTATTTCTGTCTTGGCTATAGCTCAGACAGAAAGGAGTTTGCATTATGGGACACTATGGCTTGAAGTCTAATGGAAATGCTTAACTTTCTTTTATAGACTATGCTAATGAGTATAGTAACATTTCAACCTTTGACCTCCTCTGACTTGATGTTTCTCAGTAAAACAAGGACTTGCGATGTAATAGTATCACACACAGCTTCGAATAGTCTATCGAGTTATTCTCAGTTATACATTTCATCTCGGTTAAGATATGGGTGATGACATGTTGAAACATTTGAGTGGGGTCTTCCTGAGACTTTGAGGCAGTTGAAGATGACCAGATATTAAAGGGACAGTTGTTTCAGAAAAAAAGCCCTTCAGGAATGGCTGACAGCCATTTTCTGGGTGGTATGACAGGTTAGCTATAGAAACAGGCACTTCATATGGATTTGATTACCTTCATTACACTCTGCTAATTGACCTGAGGGACTAGCTTTCCTCCTCTACCTTTGTCAATGCACCCAAACTACTGAAAGGTAGGCACATCAGGACCACAGAGCAGAAACCATCTCACAACGTTTTCCACTTGTGGACACAGAGCAATAAGCATTATTTTGTGGAGACCTATAGACCTAGTGAAGATAGAAGATGATTGGACACATTTAGTTGACATACTCTTATGCAAATGCCAGTATTGCAAGACAAGCATTCAGTAGTTTATGGACAGCAATTATATGGCACCCTTTACCGAACTGCACGTTTTCATCAATTCCAAaccaagaagaaaaaaaatggccCTTCTTTAAACAAAGTCGTGGGTCCTCGACACTTTGCATGTGAACTAGTGTTAGATacattttcctctcctctataaCTGTCTTCCTCTCTTGTCTTTCCCTGTTgtgaccctctctttctctccttcccctattATTTCAACCACTCCTTTTTCCCGTTCTCCTAATGTGTATTGCTTTCTCCTCTttttcttccccctctttctGGTTTGTTAGTTTTGTTTTTGTAATTGTGCATGTACAAGTGTCACTGACTCGAtggatatgtaaaaaaaaaagtaaaaaattacGAGATTTCAGCTGCTGAAGCCATGCAAAACGTTTTGAAATGCCCTTAAAATATGGAAGATGTTTTCTGAATGCTTTATATTCTTTCTGctgtaaaataataaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1577910 lncRNA downstream 1187 47405706 ~ 47408072 (-) True G1381365
TU1577848 lncRNA downstream 55983 47353056 ~ 47353276 (-) True G1381309
TU1577779 lncRNA downstream 156745 47252300 ~ 47252514 (-) True G1381247
TU1577777 lncRNA downstream 161770 47247155 ~ 47247489 (-) True G1381245
TU1577773 lncRNA downstream 186939 47222111 ~ 47222320 (-) True G1381241
TU1579078 lncRNA upstream 17407 47439450 ~ 47440540 (-) True G1382454
TU1579104 lncRNA upstream 69017 47491060 ~ 47491567 (-) True G1382475
TU1579166 lncRNA upstream 183225 47605268 ~ 47606425 (-) True G1382535
TU1579358 lncRNA upstream 496173 47918216 ~ 47919607 (-) True thap3
TU1579362 lncRNA upstream 502641 47924684 ~ 47924920 (-) True G1382724
XM_036947080.1 mRNA downstream 18272 47366232 ~ 47390987 (-) False LOC110492147
XM_036947086.1 mRNA downstream 18272 47366232 ~ 47390987 (-) True LOC110492147
XM_036947079.1 mRNA downstream 18285 47366232 ~ 47390974 (-) False LOC110492147
XM_036947085.1 mRNA downstream 18287 47366232 ~ 47390972 (-) False LOC110492147
XM_036947083.1 mRNA downstream 19495 47366232 ~ 47389764 (-) False LOC110492147
XM_036945779.1 mRNA upstream 496114 47918157 ~ 47927478 (-) False thap3
XM_021566207.2 mRNA upstream 531375 47953418 ~ 47956955 (-) False LOC110492153
XM_021566206.2 mRNA upstream 532304 47954347 ~ 47956955 (-) True LOC110492153
XM_036947101.1 mRNA upstream 609859 48031902 ~ 48035116 (-) False LOC118939549
XM_036947102.1 mRNA upstream 609859 48031902 ~ 48036060 (-) True LOC118939549
TU1577598 other downstream 319729 47087169 ~ 47089530 (-) True LOC110492137
TU1577528 other downstream 530113 46878611 ~ 46879146 (-) True G1381036
TU1577381 other downstream 647793 46759287 ~ 46761466 (-) True LOC110491077
TU1577402 other downstream 740665 46657467 ~ 46668594 (-) True LOC110492767
TU1577322 other downstream 807884 46598697 ~ 46601375 (-) True LOC110492764
TU1579060 other upstream 3269 47425312 ~ 47448865 (-) True LOC110492148
TU1579359 other upstream 521336 47943379 ~ 47946222 (-) True G1382721
TU1579549 other upstream 860170 48282213 ~ 48312958 (-) True G1382894
TU1580193 other upstream 1762265 49184308 ~ 49196326 (-) True LOC110492187
TU1581430 other upstream 2181075 49603118 ~ 49719539 (-) True LOC110491086

Expression Profile