RNA id: XM_036947131.1


Basic Information

Item Value
RNA id XM_036947131.1
length 5525
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110492177
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 48650173 ~ 48970488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGTAGGAGGGGGTGGCTTTGTAAGCTACAGTCACATAAAGTAGAAAATAACCAGCGCAGGAACCCTTTCAGCACCACTCGCCAATGGACAGCGGTTTCAGCACGCAGAGTCATTGGGCAGTTTGAGAAGTGACAGGATTTGTTAGGAGTCTCGAGACCAGTGGGATTTGGACTACCGAGCCATCAAGACAGGTCCTGGAGGTTATATTCTCGTAATTCTTCGGCACTGCTATTGTATCCCCCACTACAGGACTAAACATATGCCTTTGTATCCTTACACCTGTTTTTCTTCAACTCGGGTTCGAACCAAAGAGGAGTTCTCTGGAAATAATCCGTATTTCTGCACATTCTGAAAGACACAGTCGTTGAAAATAGAAATTTAGAGTGGACGGTATCAATTCAACTTCTTCATAAACGAAATTTTCTGAAATAAAATCCAGTGGGTTTCTTTCAAAGAAGTCTGCTGTCTTTCTGAGCTCGAGGAGGGAGGCCATGTTTCAGTACCTGCAGGTCTGCTCGGGCTGACTGAGGACTTTCTGCCTGCTCCAGGGGGGTGAGCCAGAGAGAAGCTAAACGCCCCTGACTGGCTCTGGAGGAGTGGAGAAAAGAAGGCTTATCTCCCACCTTTGTTCTCTCTAATGCCCCTTGAGATGGCTCTCCACGGACTCACTCCCACCTCAGTCAAAACTGTTTAGTAACTCCACACCATCTCCATACCccaactgcagggagagagaataTCACACAAggaagtggagaaagagagagagaaagctaatTAGTATTACTGAGATAGTGTCAAAGCTGAGAGACATGAGAAGAGACATCTGAAGAGAGTTCTGTGCTCTGAGGGATATTGCTGCTAACCTTTAGGACATTTGTTTGTGGTATTTTTTTAAAAGGGACTCATTTTAGTTGGTTGCGGGTTTAACTTAGCCTTCCATCATGACTCTTCTGGGAAGCTGTATGAAGAGGGGGCAGACTGACTGCCACAGGAGTGGTCCGGCTGGGCCCTGTCAGGTCCTGCTCCTGACCTGCTGTATCCTGGTAGTCCTGGGGGCCAAGCCAAAAACACCTGGCCACACACACCTCAACTCCATCCGTATTGACGGGGATATCTCACTGGGTGGGCTCTTTCCTGTACACGCCAGAGGCAACAATGGGAAAGCCTGTGGGGAGCTGAAGAAGGAAAAGGGGATCCACAGACTGGAGGCCATGCTGTTCGCCTTGGACCGCATCAACAACGACCACGAGCTGCTGCCCAACATCACTCTGGGGGCCAGGATCCTGGACACCTGTTCACGGGACACCCACGCCCTGGAGCAGTCGCTCACCTTTGTCCAGGCGCTCATCGAGAAGGACGGGACGGACATCAAATGCCTGAGTGGTGGGCCGCCCATCATCACCAAGCCTGAGAGGGTGGTGGGCGTCATCGGGGCCTCCGCCAGCTCCGTGTCAATCATGGTGGCCAACATCCTGCGCCTCTTCAGGATCCCCCAGGTGAGTTATGCCTCCACGGCTCCGGAGCTGAGCGATAACACGCGCTATGACTTCTTCTCCCGCGTCGTGCCTCCGGACACCTACCAGGCACAGGCAATGGTGGACATAGTCAAAGCCATGAGCTGGAATTATGTCTCCACAGTAGCATCGGAGGGCAACTATGGAGAGAGTGGTGTGGACGCCTTCATACAGAAGTCCCGCGAAGACGGAGGTGTGTGCATCTCTCAGTCAGTGAAGATACCACGGGAACCTAAGCTTGGAGAGTTTGACAAGATAATCCGTAGACTGTCAGAGAACCCCAACGCCCGGGTTGTCATTCTCTTTGCCAACGAAGATGACATTAGGCGGATTCTTCAAGCAGCTAAGAAggctaaccagacaggacattttATATGGGTGGGGTCAGACAGCTGGGGTTCTAAGATCTCCCCCATCCTGAACCAGGAGGAGATGGCAGATGGGGCTGTCACGATCCTACCTAAACGGCAGCCTATCCGAGGGTTTGATCGCTACTTCATCAGCAGAACTTTGGACAACAACAGAAGAAATATTTGGTTTGCAGAGTTCTGGGAAAACAACTTCCAGTGCAAACTCAGTCGACACGCTCTGAAGAAAGGATCCGGCATCAAAAAGTGCACAAACCACGAGCGGATCGGGAAGGACTCGTCCTATGAGCAGGAGGGGAAGGTCCAGTTTGTGGTTGATGCCGTTTACGCCATGGCTCACGCGTTACACAACATGCATAAGGAGCTCTGTCCAGGGAAAGTGGGCCTCTGCTCTAAAATGGAAACCATCAATGGAACCATGTTGCTCAAGTTCATTCGCAACGTCAACTTTACAGGAATTGCGGGCACTCCAGTGATCTTCAATGTGAACGGAGATGCCCCTGGTCGCTATGAGATCTATCAGTACCAGATGAAACACAACACCACAGAATACAAGATCATTGGCCACTGGGCAGACCAGCTCCATTTAGAAACTAAGGAGATGCGGTGGCCTGGTGGGACATGGCAGGTACCCCAGTCTATCTGCAGTCAGCCCTGTCATCCTGGGGAGAGGAAAAAAACAGTGAAGGGTGTCCCCTGCTGTTGGCACTGTGAGCGCTGTGATGGCTACCAGTACCAGGCCGACACCTACAGCTGTAAGATGTGCCGCTTTGACCTGCGGCCCAACGAGAATCACACCGCCTGTGAGGCCATCCCGATCATCAAGCTGGAGTGGAGCTCCCCCTGGGCCGTCATCCCCGTCCTCATCGCTGTGCTGGGCATCATGGCCACCATGTTTGTGGTGGCCACCTTCATCCGCTACAATGACACCCCCATTGTGAAGGCGTCAGGGCGCGAACTCAGCTATGTGCTGTTGACGGGCATCTTCCTGTGCTACGCCACCACTTTCCTCATGATCTCAGCGCCTGACGTTGGAATCTGTTCCCTCCGACGGATCTTCCTAGGTCTGGGAATGAGTATTAGCTATGCAGCGCTGCTCACCAAGACCAACCGTATCTATCGCATCTTTGAGCAGGGCAAGATGTCAGTGAGCGCCCCCAGGTTCATCTCCCCAGCCTCCCAGCTGGTTATCACCTTCAGCCTGATCTCAGTGCAGCTCCTGGGGGTGTGCATCTGGTTCGGTGTGGACCCATCTCAGGCTATCATCGACTATGAGGACCAGCGCACGTCCAACCCGGACATGTCCCGTGGCGTGCTCAAATGTGACATCTCAGACCTTTCACTGATCTGCCTGCTTGGCTTCAGCATGCTGCTCATGGTCACCTGTACAGTGTATGCCATCAAGACCCGGGGGGTGCCAGAGACCTTCAATGAGGCCAAGCCCATCGGCTTCACCATGTACACCACCTGTATCGTCTGGCTAGCTTTCATACCCATCTTCTTTGGGACTTCACACTCAACAGAAAAGatGTACATCCAGACCACGACTCTGACCATTTCCGTGAGCCTGAGTGCCTCTGTGTCTCTGGGGATGCTCTACATGCCCAAGGTCTACGTGGTCCTCTTCCACCCGGAGCAGAATGTGCCCAAGCGCAAGCGCAGCCTCAAGGCTGTGGTCACCGCGGCCACCATGTCCAACAAGTTCCCCACTAAGGGCGGCCTCCGGCCCAATGGAGAAGCCAAGTCTGAGCTGTGTGAAAGCCTGGAGACACAAGCATTGGCCTCCAAGCAGACATACATCAGCTACAGTAACCATGCCATCTAAGAAACAGACAGTGGAGACCCGGCTCAGAAGCTACGACCTGCGTGTGGAATGAACGAACACCAGAACTGGAGCACCAAGATGCAAAAGCAGTGGGACATGGGGAGAAAGGAGAATAATCATTCAACTTATTGAACGGGTGTCACTATTTTCAAGAGGACCAGTCAATGCAAGGATATTCAATGCCAAACAAAAGCAGTGGGGAGGCTCCTAGTGGGGCGGGGAGGTGCAGATTTCAGGCAGATATGACAGTGATGTCTCCCCATCCCCTTTGTGACATGTCACAGAGACATCAGACAGTCACATTTCCAAATTAAGTCAGTGTTTTCCTTCTGGAGTTTATAGAACAGCTTTTCTCTTCTGGTGTTTTGTCTGATGAACTCCCTGGCTAACTCCCTGACAAACTCCCTGTTCTGTAGTGAATTGAGTTTTCTCTCTGTGTGCAGCGGTGTTGTATCTCTCTCTACCAGTGGTAATGTGCAATTATTTGCTTCCCCTTCTTCTCTGTCCTTTCCAATGAGGGTGAAAGGCTGAACACAATATCTAATTTGTCAATAAGACCAATCTGTCAAAAGAAGTATGTATAAGCAGATGAAAAAGCATGTTATTGCTGTGGGTTTGTCTTCGTTCAAGCCCCCAAAAAACAGAATATTAACCCTCAGGCTCTGTAGCATTTACATTATGTTGTCATCATTTTAATGAAGGTCATAGTTGTGAAACAGAGAAAACAAATATGCAACTTTCCAACATTGGAATATTCATTTGTTACAGCATGGGTCCAGTAAATGTTTCCTTACCATCGTGGACAGTACATTAATATATCAGTGGGTTTTCCCAGATGATGGCTATACCATATCTGACACCATCTTTATGGTCCTTGTGTACAGTCCTAGAGCATGCCTGTGGGAGCATAATATGTACCGTGCTGTGTTGTCAAAATCTATGGAATGCAACATGTGAGAGGATTGCGGTTCAACAGTCCCAGTGGCGTTATCATTGTGGACTATTACACACATGGTACTTTTTTGCAGATGAACGGAAGATAAAAAATACGAGAAACAGCCATAAGAATTAGCTAACAAGTAAAAGGATTGTATGTACTCCACATCCTATTTTTCTGTGAAATACAGCCTCAACACTACAGCCCATAGACAGCTGAAGGGCAATGCTTCACTGCATCCAACCTGGCATCTTTACATGTAAGATGATCCTTTCATGGCCTTGTTCCATTAGAATTTCTGAAGTTCCATCTCAACATGTGAAGAATTTGGAATCTGTACCAGAAATGTCTAACATAACATATAGGCATTTATTGGCATGTTAGGTAATGGTACAAAACACACTCTTTGGAACATCAGCAGTGTTCACCATACTTCGTTATGTTATTGAATCTTTTGCCAGGCACCTGTGATTTCAGTAAAAGCGCTTGTTGCTTTCATGTTACTCAGAGAGAGGAAGTCGCTCCAAATCCACAAGTGAATTAGCTTTAAGAGTAAGCCTATCCCTGCCAGGTCAACAGAGGAAACCACTGTGTAAAAATAACAACAAACACAGCTCTCATCTCCTTCTGTATTGTGTCCTGGATGCAATGTTGTTAGTCATACTGTGTTTTTAGTCTAATTTCATCATTCCATTTCTGGAAATGTACTCGCAATTAATGTTATAGTATCAAAGCCAGTCACTTAATATAGTAAGAAATAGATTGGCAAGATGCTGTGTCACAGCCATTCATATCATGATGTGAATAGCCATTGGAGAAATGATCCAATAAGCTCCAGAACGAAaactactgtaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K04607 GRM4; metabotropic glutamate receptor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1579780 lncRNA downstream 35825 48596478 ~ 48614348 (-) True G1383073
TU1579688 lncRNA downstream 202290 48447219 ~ 48447883 (-) True G1382997
TU1579600 lncRNA downstream 256927 48390979 ~ 48393246 (-) True G1382925
TU1579597 lncRNA downstream 302288 48347046 ~ 48347885 (-) False LOC110492167
TU1580028 lncRNA upstream 63843 49034331 ~ 49040134 (-) True LOC110492180
TU1580108 lncRNA upstream 88360 49058848 ~ 49059230 (-) True G1383391
TU1580111 lncRNA upstream 90966 49061454 ~ 49061684 (-) True G1383394
TU1580113 lncRNA upstream 93714 49064202 ~ 49065411 (-) True G1383396
TU1580164 lncRNA upstream 171927 49142415 ~ 49146676 (-) True G1383437
XM_036945781.1 mRNA downstream 102006 48547180 ~ 48548167 (-) True LOC110491085
XM_036947129.1 mRNA downstream 116997 48525042 ~ 48533176 (-) True LOC110492176
XM_036947130.1 mRNA downstream 116999 48525042 ~ 48533174 (-) False LOC110492176
XM_036947118.1 mRNA downstream 128667 48484511 ~ 48521506 (-) True LOC110492173
XM_036947122.1 mRNA downstream 128671 48484511 ~ 48521502 (-) False LOC110492173
XM_021566267.2 mRNA upstream 63841 49034329 ~ 49038617 (-) False LOC110492180
XM_021566269.2 mRNA upstream 63841 49034329 ~ 49040167 (-) False LOC110492180
XM_021566266.2 mRNA upstream 63841 49034329 ~ 49040181 (-) False LOC110492180
XM_021566260.2 mRNA upstream 73283 49043771 ~ 49047518 (-) False LOC110492178
XM_036947134.1 mRNA upstream 73289 49043777 ~ 49047518 (-) True LOC110492178
TU1579549 other downstream 337215 48282213 ~ 48312958 (-) True G1382894
TU1579359 other downstream 703951 47943379 ~ 47946222 (-) True G1382721
TU1579060 other downstream 1201308 47425312 ~ 47448865 (-) True LOC110492148
TU1577598 other downstream 1560643 47087169 ~ 47089530 (-) True LOC110492137
TU1577528 other downstream 1771027 46878611 ~ 46879146 (-) True G1381036
TU1580193 other upstream 213820 49184308 ~ 49196326 (-) True LOC110492187
TU1581430 other upstream 632630 49603118 ~ 49719539 (-) True LOC110491086
TU1581769 other upstream 1094333 50064821 ~ 50065817 (-) True G1384875
TU1582569 other upstream 2085143 51055631 ~ 51056061 (-) True G1385645
TU1582822 other upstream 2120157 51090645 ~ 51128648 (-) True G1385888

Expression Profile