RNA id: TU1580028


Basic Information

Item Value
RNA id TU1580028
length 2210
lncRNA type read_through
GC content 0.42
exon number 6
gene id LOC110492180
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49034329 ~ 49040181 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAATCAAAGTGCTATTTTGTTTTCTTCCTGGTTAGCTTCACAGTGACAGAGGAGCAAAAACATTCGGCTGAAGCGGGCCACTGATGTGGATGATTGACTCGCCCGGAGGGTTTCCAAAACCTCCCTTGGCCAGCGGGCAGCCCTGCATATTTCACACTGATTTGTGAAGGAAGAGAGACCATGTGGAAGTCACATGAACAACAAGGATGAGACAAAAACAACTGGGAGTTAACTTGTTGAGGAGAGGACTGCTGCCGCCCAACTTCTCCCTCCAACTGGGGATTTGCTGCCTGTCCCACCCTCCACCCAAACATATGCAATGAACAGCACTACTCAGCCCCCTGCCATCATAGACGGGGATGTGGCAGTCAGTTccgtgttggtaccattcttccTCATCACCTTTATCGGGATAGCTGCAGCTGTGGTGATGTATGTGCGCCGGAAGAGAAGAATTGACAGGCTCCGGCACCAGTTGCTTCCAGTCTATACCTACGACCCCTCAGAAGAATTACATGAAGTTGAACAGGAAATGCTGTGGAAAGAGGAAGATACTAAGGTGGTGAAGGGCTGGGCACGGTCCTACCAGCAGCAACGTCCCCTGTTGATGAAAGATGCCCATGCATGAGTGTGTTGGAGCAGGACATCGATCTGTGCCATCCTACAGATCAGTGGAGTTAACCCTTGATATGCCAGATTTGTCAATCATTAAACACAAAGGGTTTTTTAGGAAAAGCATGATAAATGGGAACAGCCTGTCATACCTTTGCATCATCATCTTTGTCATTATCATCCATCAGTCATCACCATCTCTGTTGGAGCATTTACTTTGTACAGTGTCAGCCTCTAAGCTAAGGGGAGGTTGGTTATTATGTGAACCTCTGAAGCCATGCCCGTTTTCACGAAAGCCATACCCTAAACCACGACACGTTGGCTAACTACTAGTggacattatttatttgagactatttattcattttttttaactgtgtttgtgtgtatgattATGTGGGTGTTACTGAAACATTTGCCTTAATGTCCATTGTTACTGTTTTAAGTAGTACTATACCAGTGAGATTAGCAAAGCCTTGACCTTGGGTGGGATACTTCCAGTTGTACTACTAGTTTTGGTGGTGTAAAATTAGGTTACTATGTCCCTCACTATTCAATGTCATAAGTTACACAGATGTGCAGTCAATCAATTTGAGTCCTGCAATTTTCCTTGTTTGTTGCACTGTGAATACCATTATCAAATCAACCAAAGTAATACCTCCTTCTCGTCATCATCCAGATGTGTGATGATAAAACGGTGGTGAAGAGAGAGCAAGATtgtttcctgttctctctcttttgtttcaCTTGAGTTGTTTCAAACATCACATTCAGAAATAGgatgtgcagagagagagagaaccctctGGCTGTATCTGGGATGTCACACAATGGCCAATGAATGTAGATAGTGAACCAGCCTCCCCTACCCCACCCACTCCTCTCCATTATTTAGCTGTGACTACTGCCCTAAAAATGTCCTGTCTGGAAGACAGGGCAACAGGATTATTGTTCTTCTAGCAGAAGAACGTCATAGGCCTGACTGTATGCAGGAAACCTCATGTGTCGTTAAAGAAATGAGTGAACAGTGATTCATCCTTGTATAATGTGCTCTAGTCTAGGTTACCCACCTTTCCTCCTTGCATTTGTGAATGTCATTCAGGATGAGAGATGAAGGCTCCCATTTGAAATCAATCATCTTATCAGCGCATGTATATGTATGTAGGAGTCCACTCAATAATTTAAACtgaaatatatataatgtatttcCATTCATTTGAATGTGGAATTTAGACTTTTGACTTGAATAATTGACTTTTTCCTGAATGCTAACAGCTACGTATTACGCTCCACTATTTATAAAGTCGGAGTTAATTCCCATGCACATTAAACATAATGCATTCGATTTAAAATGCGGAGTGTGTTCTGAAAAGAAAATACAGGATAGACTACTGATGAAAATACAAATTCTACATGTAATTTTGACATCACTTATCAAGATTTTGCACACTTGTTCAAGACTGATTTATATTTGTTGCTTTTCAATTGAAGCACTAATTGTCTGTCCATGAAGTAAACTTGTATGCATCTTAGTGAGAATATGGACTTTTTATAGATGGTCTGGATGTAAAGCAAAAATAAAATGGAAAGGAGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1579780 lncRNA downstream 419983 48596478 ~ 48614348 (-) True G1383073
TU1579688 lncRNA downstream 586448 48447219 ~ 48447883 (-) True G1382997
TU1579600 lncRNA downstream 641085 48390979 ~ 48393246 (-) True G1382925
TU1579597 lncRNA downstream 686446 48347046 ~ 48347885 (-) False LOC110492167
TU1579596 lncRNA downstream 686446 48347257 ~ 48347885 (-) True LOC110492167
TU1580108 lncRNA upstream 18714 49058848 ~ 49059230 (-) True G1383391
TU1580111 lncRNA upstream 21320 49061454 ~ 49061684 (-) True G1383394
TU1580113 lncRNA upstream 24068 49064202 ~ 49065411 (-) True G1383396
TU1580164 lncRNA upstream 102281 49142415 ~ 49146676 (-) True G1383437
TU1580190 lncRNA upstream 139533 49179667 ~ 49182872 (-) False LOC110492187
XM_036947131.1 mRNA downstream 63843 48650173 ~ 48970488 (-) True LOC110492177
XM_036947132.1 mRNA downstream 308937 48650173 ~ 48725394 (-) False LOC110492177
XM_036945781.1 mRNA downstream 486164 48547180 ~ 48548167 (-) True LOC110491085
XM_036947129.1 mRNA downstream 501155 48525042 ~ 48533176 (-) True LOC110492176
XM_036947130.1 mRNA downstream 501157 48525042 ~ 48533174 (-) False LOC110492176
XM_021566260.2 mRNA upstream 3637 49043771 ~ 49047518 (-) False LOC110492178
XM_036947134.1 mRNA upstream 3643 49043777 ~ 49047518 (-) True LOC110492178
XM_021566282.2 mRNA upstream 36433 49076567 ~ 49082834 (-) True LOC110492190
XM_021566278.2 mRNA upstream 106683 49146817 ~ 49159851 (-) True LOC110492186
XM_021566279.2 mRNA upstream 139519 49179653 ~ 49196706 (-) False LOC110492187
TU1579549 other downstream 721373 48282213 ~ 48312958 (-) True G1382894
TU1579359 other downstream 1088109 47943379 ~ 47946222 (-) True G1382721
TU1579060 other downstream 1585466 47425312 ~ 47448865 (-) True LOC110492148
TU1577598 other downstream 1944801 47087169 ~ 47089530 (-) True LOC110492137
TU1577528 other downstream 2155185 46878611 ~ 46879146 (-) True G1381036
TU1580193 other upstream 144174 49184308 ~ 49196326 (-) True LOC110492187
TU1581430 other upstream 562984 49603118 ~ 49719539 (-) True LOC110491086
TU1581769 other upstream 1024687 50064821 ~ 50065817 (-) True G1384875
TU1582569 other upstream 2015497 51055631 ~ 51056061 (-) True G1385645
TU1582822 other upstream 2050511 51090645 ~ 51128648 (-) True G1385888

Expression Profile