RNA id: XR_002468971.2


Basic Information

Item Value
RNA id XR_002468971.2
length 4230
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110492187
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49179653 ~ 49196706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acggtcatccaactcggaattccaactcgggaaccTTCGTAGAGTttcgactttccgacctgaaaattactgacgtcatgatttgaagTCTTGTTTGTTCGGAAttctcagttgtcttgaacgcaccattatgccgcgttcaaaacaattAGGATTTCGGCAAATACGAGGTTAAaacatgacatcagtgatcttcaggtcggaaagtctgaGCGAtagaaagaggcccaagttccCGATGTGGAATTGCGAGTTTGATGACCgttttaaataaacaaaaatcccagtcggagctcgttttttccccgagttcccggttgttttgaacgcactgacctcggagatttccgagttccctgTTGGTTTGAACGCGGCATCAGTCGTAGATTTGTCACTGTCATGCGCATTTGGGTtgttgtttagttttttttatgacAGGTTGAGGCCTCGGACTAAATTAGGAAAGGTACCCTGTCCCTTGTCAGGGAAATCCGCGATGGAGGGCATGGAATTGGATCTGGACCCGGAGCTTATGCAGAAATTCAGCTGCATGGGCACCACCGATAAAGACATCCTCATAGCCGAGTTTCAGAGACTGCTTGGGTTTCAACTGAACCCCGCTGGATGCGCCTTCTTCCTGGACATGACCAATTGGAACTTACAAGCAGCCATCGGAGCCTACTATGACTTTGAAAGCCCCAACATCAATGCACCATGCATGTCTTTTGTTGGGGATGTGACGATCGGTGAGGGGGAGTCTGTTCCCCCTGACACGCCATTCACTAAGACGTGGAGGATACAGAACACAGGAGCAGAGTCATGGCCCCCCGGGGTATGTCTGAAGTATGTTGGAGGGGACCAATTTGGTCATGTGAACATGGTGATGGTGCGCTCATTAGACCCCCAGGAGATGGCTGATGTCAGTGTGCAGATGCGTAGCCCAGCGGCTCCTGGCATGTACCAGGGCCAGTGGAGGATGAGCACAGCCACAGGACTCTTCTATGGGGATATGATCTGGGTGATCCTCAGCGTGGAGGTGGGAGGCCTCCTGGGTGTGACGCAGCAGCTGTCTTCCTTCCAGGCCGAGTTTAACACCCAGCCTGCCCGCAACGTGGAGGGAGACTACAACCCCTTTGCCTCTCCACAGAAACACGTCGGTAGCAACGAAAACAGTCACCGTGACGACAGCGGTCTCAAGGACCCCGCGGACACCTGGGAGGGTGGCCCGGACCAAATGCAGCAAGAGCAAAATGGACTGTCACAAAACTCTGTGAATATAGCAACAAACGGTCTCCAAAGCAACTTATCAGTAGTGACTTACAGCCAGGGTATTCACGGACCCTATCCTTTTGGGCAGTCCTAAGACATGGGAAACATCGTCACAGCCAGGCAGCACTGTGTTCCTGGATTCACATCAACTAATGAGGGAGGATTACCTGTGGCTGGTGGAGTATCCTGAGATTCACATCAACTAATGAGGGAGGATTACCTGTGGCTGGTGGAGTATCCTGAGATTCATATAAACATTTATGCAAAGTCCCACCTCCACTTTaccacaaaacaaacagaaaccaGAAGACATAGCAGCTCTTTTCTGTCCCAGCATACGACTCAACCAACATCCCACATCCAGTGTATGCATGTGTGAATGCTAAGTTAAAAATGAGAGTGCTTAAAAATCTTTTTAAAAGCAATGAGAAGTTTTTTTTCTGATCTTTATTTTTTGATTTTAGTTGTCGTGTCTGAATGCAGTTGAGACTACAGTGTTGAAAGgagtagtgtgtgtctgtttgcgtgggtgtgtgtgtttgcgtgtgttgtGCAACCTGAAAGAGACAGACTAGGGAGGAAAAGCCATTTATTTTGCGTACTGATCCTCTAGTTCCTAAACtgacttaaaaatatataatctgttCTCTTCTTACTTTTTTAGCCTAATTTCACAGTGTATACTTTTCAGGGACAGGAGAGTAATTCCACAAATTCAGCAGCCTGATATGCATGTATTGTTGTTGATGTTTTCTGGTAACATCAAATGAAGAACAGCTCATTCACATGCATTTCCTGTTCACTATTTGCTGTAGCTTCACTTTGATTATGTTACTCTGAAAGTtgagctacagtatatccatccacTAGAGGGAGGTCTTTATCAAAATTGGAGTTGCCCAGTcctgtaaaaaaaacacaaaaaaaaacattaactaACATTTACTCAAAGGATCCTCTATATCAGGGTCAATACATTGAAAGTAGATTTGTATCAGCACCCTGTAGGTTCAATTTGTTTTCATTTGTTCTGTTAGATTGCAAAAGTCCACATGTTGCAAACCCATGACGTTTCTGGCTTTTATTGTCTTGAGTTGAATGTATTTGCAGAATGTAGAGCTATGTTGTTTTGAAGCATCTTTGCTTATTTTGCCCAaagattttatacatttgctttgAAAAAGGCACAGCTTGATTAATGTTTTGCTAATGATCCTGGGCTTTGGAATAAACTGTTGAGAGAAAATTCTGAATTCACAATTAGTCTCCTCTTGCTCAGACATTAAAATGTTAAACAACTCGTTTGTTAAAATATTTGTTTGTACCAGCAGTCAATTCATTAGTCCCTCAAGAGTCTATGTAAAGAATGTGTGAAAGGTTCTGAACAGTTATCCTGAAAAGTACTTTTTCTCTCATGGCTaactaccaggaagtttgaaaagacaggctgagtgggcaGGGTTGCTTTTATTCATGACCGACAACTagccttgactgacagctctttgaaatgcCTATGTCAAGCGACTTGGATGCAGTGAGCGGCGTTGCAATACAATTATCTCAAGCTAATTTGGTAATACATAAAGCAAATCGAACCACATTGAAATTGCATCGATGATATTTGTTTTGGCATGTCTCTTGTGATGCggttcacagcagcactgacgGATGTGTTGGCCTGACAACTGCGTTGGCGTTTTAAACGACCCTTCCCACTCTTTTGTTCCATGCTGggtgaagacctagctagccagtaacaccagacacagatgaatggGGAAACGTGTCTTTTCCACAGATGAATAGGGTAGACTTTTaattatatttgctgacaccCTACAGTAAAATGTTGgcaccagtagagtagctatctagctatataAACTAAGCCCCTCCAAACACACTTTTGCCGATGTTGGTTTGAAGGtggtacttatttaaattaggtaagaCAGTATCATGTTACCATTAGTGTATTAAAATTAGAGTTAAAGTGATGTCCTCTTAATAatgaatccaagtgtttgacatgggggagcggaccagtaactttatgatcaaactttatcATTGTAAAAGCaacagtcatttttcatactttggtcatcatactttgatctggtttcatccaaatatcattcaatttcatgaaaaacatgattttgactgttcaAGACCTTTTAAGTTACTTGCACTAACTGGCTAATCTCTATGCACTGAGTAGTTACCTATCGCTTCTTTTACTATGGCCAGTTGTCTTTATGCTTCAGTTTCATGCCTGGAAGGCTACATGACTTTTTATCTTGTATTTGTTATATTTCCATCTGCAACTAGTGAAGACTTTGACAACCTGGCTACCGAGATGACCTTTTTCAAATATTCACTTTACATAGGGGGGAGTAGGACAACAAACAGCAGCACACTCATTTACCCCCCAGGGATGACTGTGTACTATGAAAATGTCACAGCAGTATCATTGTCCAGAACCACACCTCTTGTCATGGTTGATCTGCCTAGGTAACAGCATTTGGAAATATCTTGGATCAATTGCATGTGCTCTTGAAACTTATGAAGCATGGTAATGACAAACGTTTCTCCTCGTCTTAAAAACAGATGAATACACTGCCCTCTAATCTCCCTGGTTGTGTCTCATATCGCCCCCAATTCCCTTTTTATAGTTCCcttactatatagggaatagggtacaataccatttgggacacatccccaTTTTTATCTTTTTCATTTACAATTGGATGTCATGTATGTAATGAGTGATACGTTTGCTTTTTTTTTGGTATGGTAGATTTTCAGGGGTCAGAGTGGTGAATGGATGACTTGGTGCTAGAGTTCTACAGCAGCACATTTATGAGACAAAGTCAGAGCAAAGAAATGAAAGCCCTTTTTCTGTATGTTTGAATGAACCTTTGTATAATTAAATTATCACTGAAAACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1580164 lncRNA downstream 32977 49142415 ~ 49146676 (-) True G1383437
TU1580113 lncRNA downstream 114242 49064202 ~ 49065411 (-) True G1383396
TU1580111 lncRNA downstream 117969 49061454 ~ 49061684 (-) True G1383394
TU1580108 lncRNA downstream 120423 49058848 ~ 49059230 (-) True G1383391
TU1580028 lncRNA downstream 139519 49034331 ~ 49040134 (-) True LOC110492180
TU1580234 lncRNA upstream 54425 49251131 ~ 49251635 (-) True G1383505
TU1580235 lncRNA upstream 54990 49251696 ~ 49251939 (-) True G1383506
TU1581246 lncRNA upstream 81283 49277989 ~ 49278498 (-) True G1384397
TU1581274 lncRNA upstream 106765 49303471 ~ 49304040 (-) False G1384420
TU1581275 lncRNA upstream 106765 49303471 ~ 49305133 (-) True G1384420
XM_021566278.2 mRNA downstream 19802 49146817 ~ 49159851 (-) True LOC110492186
XM_021566282.2 mRNA downstream 96819 49076567 ~ 49082834 (-) True LOC110492190
XM_021566260.2 mRNA downstream 132135 49043771 ~ 49047518 (-) False LOC110492178
XM_036947134.1 mRNA downstream 132135 49043777 ~ 49047518 (-) True LOC110492178
XM_021566266.2 mRNA downstream 139472 49034329 ~ 49040181 (-) False LOC110492180
XR_002468972.2 mRNA upstream 61331 49258037 ~ 49259636 (-) True LOC110492191
XM_036947148.1 mRNA upstream 212422 49409128 ~ 49517267 (-) False LOC110492195
XM_036947150.1 mRNA upstream 212422 49409128 ~ 49517267 (-) False LOC110492195
XM_036947149.1 mRNA upstream 212422 49409128 ~ 49517268 (-) False LOC110492195
XM_036947151.1 mRNA upstream 212422 49409128 ~ 49517268 (-) False LOC110492195
TU1579549 other downstream 866695 48282213 ~ 48312958 (-) True G1382894
TU1579359 other downstream 1233431 47943379 ~ 47946222 (-) True G1382721
TU1579060 other downstream 1730788 47425312 ~ 47448865 (-) True LOC110492148
TU1577598 other downstream 2090123 47087169 ~ 47089530 (-) True LOC110492137
TU1577528 other downstream 2300507 46878611 ~ 46879146 (-) True G1381036
TU1581430 other upstream 406412 49603118 ~ 49719539 (-) True LOC110491086
TU1581769 other upstream 868115 50064821 ~ 50065817 (-) True G1384875
TU1582569 other upstream 1858925 51055631 ~ 51056061 (-) True G1385645
TU1582822 other upstream 1893939 51090645 ~ 51128648 (-) True G1385888
TU1582837 other upstream 1916697 51113403 ~ 51115065 (-) True dffb

Expression Profile