RNA id: XM_036947150.1


Basic Information

Item Value
RNA id XM_036947150.1
length 6353
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC110492195
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49409128 ~ 49517268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccgctccatctctctcaaccctctctctccctctctcttatatTGAAATTGGCCAGGGTAGAACATGATCACAGAACACCGCTTCAGTATTGCTGCACATTGTCGGGCATTTCGCAAAACCCGATCACTTGAAACAGAATAAGCAGACATAAAGGAAAGGACTTCAGAGTCCCACATTATATTTTTAAAGGTGGACCAACACTTTTAAAAAAAGACCGTCCGATTGCGCGTGTTGCGCGTTGCAATCTAGCTAGGTGTTTAATAACTACAACAGTCTAACTACAGTATCAAGTAGCTATGCATATGCACGTTATAATGCGCGCGAGCATTGGATTAGTCGGTTTCTGTCTGGTCGCCTTTGTCCAACAGCCAGCTCGCGCTTCAGGAAGCAAATCCACTCAAGatGTGGACGAGTGTGCAGAGCAAATTGACAACTGCAGCATCGATGCCAtctgccagaatacactcaaGTCCTACAAATGTATCTGCAAGTCAGGCTACAAGGGGGATGGCAAGCACTGCGAAGATTTAGACGAGTGTGCGAGTGAGTACAACGGCGGCTGTGTCCATGACTGCATCAACATCCCGGGGAACTACAGGTGCACATGCTATGACGGATTCCGCCTTGCACACGACGGACACAACTGCCTCGATGTGGATGAGTGTTCGGAGGGTAATGGTGGCTGTCAGCAGATCTGTGTCAACATGATGGGCAGCTACGAGTGCCGCTGCAGAGAAGGATTCTTCCTGAGCGACAACCAGCACACCTGCATCCAAAGGCCCAAAGTGCGATCAGAGGGCACCAAGGAGGGCCCCACCTGCATGGATAAGAACCATGGCTGTGCTCACATCTGCCGGGAGACACCAAAGGGAGGCATCGCCTGCGAGTGCAGGCCTGGCTTCCAGCTCACCAGGAACATGAGGGACTGCAAGTTGACCTGTAACTACGGCAACGGGGGTTGCCAGCACATCTGTGAGGAGACGGACCACGGCCCCAGATGTGCGTGTCACATGAAGTTTGCCCTGCACACTGATGGAAAGACATGTGTAGAGACGTGTTCAGTGAACAACGGTGGCTGTGACAGCACGTGTCATGACGCGGTGACCGGAGTCCGCTGCAGCTGTCCTGTTGGCTTTACTCTCCAGCCAGACCGCAAGACCTGcaaagaCATTGACGAGTGCCGCCTGAACAACGGGGGATGTGACCACGTGTGTCGGAACACAGTGGGCAGCTTCGAGTGCAGCTGCAAGAAGGGCTACAAGCTGCTGACCAATGAGAGGACTTGCCAAGACATTGACGAGTGTTCTTTTGACCGGACGTGTGACCATTCCTGCGTCAACTCCCCCGGCAGCTTCCAGTGCTTCTGTCATAAAGGCTATGTTCTCTACGGTCTGGCACATTGTGGAGATATTGATGAGTGCAGTATAAACCGCGGTGGCTGTAAATATGGCTGTGTAAACACTCAGGGCAGCTACGAGTGTACCTGTCCACCTGGATACAAGCTTCACTGGAACAAGAAGGACTGCATTGAGCTGGTGAAATGTCTGCCTGGCCTAGCTCCCAAGACCACTCTGACCTGCAGTAAAACGGGAAAGAAAGAGAGCTGCTCCCTCACCTGTGCCTCCAAGGCTCACTATCTGGCAGAATCTGACAGCAGCTATACAATGAGCTGTGGCATCCCCATCCTTCGAGGCAAAACCCCAGCCAGACTGAACACAAGCAGCAGTCAGAGCTGCATAGAGACAGGCGCACCTCCAGTGAAGCAGACTGCCTCTTTCAAGATCAAAGATGCCAAGTGCCACCTGCACCCCAAGCTGACGGGCCGGGCCGAGGACAGGGGCCGAGCGCTGGGGCCAGGTGAGGGGCCACATCCGGCCTACATGCCAGACCTTGGAGGTGGACAGCCCTGCAATAACTGCCTGGTGACGTTTGTCAACCTCAAATGTGACTCCACCAAGAAGTCCAAAGGGCGCCGTGCCCGCAACCCCACCAATAAGGAAGTGACACGCATCACCCTTGAGTTGGAGGCAGAAGTCAAGCCAGGGGACACCACAGGGAGCTGTAACCTGAGTTGCCTGCGCCAGCGCATGGAGAAGCAGGTGAAGACGTATATCAAGGCCCTGAAGAAGTCGATCAACCAGGACCGTTTCCTGATCCGCGTGGCTGGGCTGGAGTACGAGGTGGCCCAGAAGCTGCCCCAGGTCGCCACAAGCCATGAGAACTGTGGACCAGGCCGTGAGAAGGATAGCGGACACTGTGTCAGATGTTTGCCGGGATCATACTACCACGGGGAACAGGAGCGCTGCGTCCAGTGCCCACCTGGCACCTTCCAGGAGAGGGAGGGGCAGCTGGCCTGTGACCTGTGCCCTGGAAGTGACGGGCATGGACCTGCCGGGGCACGCAACATCTCCTCCTGCGCAGGTCAGTGCCCCACTGGGTACTATTCCAGTGATGGGTTTAAGCCATGCCAGCCATGCCCGTATGGCTCCTATCAGCCAGACCTGGGACGGACCCTGTGCTTCCCCTGCGGAGGGGGGCTGAGCACCAAGCGGGAGGGGGCCAGCTCCTTCCATGACTGTGAGGTTAAAGTTCAGTGCTCCCCTggccactactacaacactacggtGCACCGCTGTATTCGTTGCCCTCTGGGCAGCTACCAGACAGAGTTCAGACAGAACTACTGCATTACCTGTCCTGGCAACACCACTACAGACTTTGATGGGGCCACCAGTGTCTCTCAGTGCAAGAACCGGGAATGCGGAGGAGAGATGGGCGAGTTTACAGGTTACATTGAGTCTCCCAACTACCCCGGGAACTACCCAGCTAACGTGGAATGCATCTGGAACATCAACCCGCCCAGCAAGCGCAAGATCCTCATCGTGGTGCCTGAGATCTTCCTGCCCTCAGAGGACGAGTGTGGAGACGTACTGGTTATGAGGAAGAACTGGTCGGCCACGTCCATCACCACCTATGAGACATGTCAGACGTACGAGCGACCCATTGCCTTCACCGCCCGCTCCCGCAGACTCTGGATCAACTTCAAGTCCAACGAGGCTAACAGTGCCCGAGGCTTCCAGATCCCCTATGTCACCTACGATGAGGATTATGAACAGCTTGTAGAGGACATTGTCAGGGACGGAAGACTCTATGCCTCTGAAAACCATCAAGAAATCCTAAAGGATAAAAAGCTGATTAAAACTCTCTTCGACGTGCTGGCCCAcccaaacaactacttcaagtACACCACTCGGGAGTCCAACGAGATGCTGCCGCGCTCGTTCATACGCCTCATAAGCAGCAAAGTCTCCGGCTTCTTGCGTCCATATAAGTAGTTGCCACACCAAGCCCGCCCCCTAAAGCACCAGATCCCGCCCCCTCTtacaggccaaacacagaacTCTCACAGGACTTTAAACAAGTTGACCAAAATAACtatttttttcttctattttttCATACTGTAGAGGCTTTGACGACACACTTCACTATGCAGTCCCACATGTTGATCTTCTTCATCTGTTTGGTTTTAAGCCATTTCATTTCCTCCAAAACCATGCAGTCCATGAAGTCAACCAACTTGAGTCAAAGTACAGTACAGGCTGTCTTTCTCATCTCTTCTTTCTGAATATTTATCACCACTACAATATGTTGGTGTCTTAGTTTTTTTTGCTGTTTCTATTAGCATATATGACCTTGTATGTCATTTTCACAGCAATCCCCAATGCGAAGGATGTGTGCGTATTTCAGATGACGCATGTTAAGTCTGTGTTGACAAAATGGACAACGGTAGTGGCATTTATGTCAGACAAGAAGAAGGATATCACAAGGGTAATATGTTTGTCACGTGTGTTTAGAGCTGGAACTGAGTTATCGTAAATGTGCTTTAATAAATAGTCTTTCACTTGAGTTCCAGCTTCAGCTCAATCCATTCCAGGACGAGTCTGTTTCGATAAATGTATAACCTTTTGTAGATCTATATCCTCCATGAACAATCCTCAAGGAGAAGGACCTGTCAGTTTCCTGTCATAGTTACATTCCACAACATTCAAAGCCTTACTATATTTGAGCTCTTAGAGCAACTTCTTGTTAAGGTATTACTGTTAAAACAGTTATTCTATGTTTATCTCTTCTGTCCAGATTGTATAACTGTCTGTTACCTATGTTCAGACATTTTCTGTTATTCTATATCCAAGTTAACTTAACAAAGCGTATACAAGGTAGTTTATCATTTTTTCCAGAACGTGATGGACATTTTGGAAAATAAATAGAAAACTAGATTTGTGAAAgccacaggagagagacagagaaatgtctctatgtctctgtggaCCATGActggtgagggagagacagagagacatcttAATTAAGGGACACGCCTCTGTGATACAATGTCTTTGTTGGACACgactctgtgagagagagacagagaaatgtcttTGAGGGACACgactctgtgagagagagacagagaaatgtcttTGAGGGACACGACtctgtgagagagacacagagaaatgtCTTTGAGGGACACGACtctgtgagagagacacagagaaatgtCTTTGAGGGACATACATTTGCTGCTTCTTTTAAAAAGGTCACTTTAATTCTTCAATCTCAAGTCCCTTTTCTGGTGTTTTCTGACCTCGCATCACACTAATAGTCCATTGCTTTaatacaggggtgtcaaactcaatttGCTCCGAGGGCCGCCGTCAGTCTTCAACAAGGTCCGGAGGGCCGCACtgaattttaaaaaatatttccTTGCTGTCAATCGGTTTGGGAATTTTGAAATCGTTTTAACTTTCAAGTTTTTATTGTTTTACTCAAACCACCCGCGGGCCTCATTGGACCTCCTCACGGGccgtatgtttgacacccctgctttaaTATAAAATAAAGTTGAGAGAGATGCATCAGAAGTATAAATATAATTCTACCACCTGTCCTCATGTAAATGATAGTCACATCACATTTGTCTCTTCATCCATGGCCTACCAACCCGTTTTATTGAATTTTTCTTTCAATCTTGTAAATAATGAAAATAAATTAGACGGGGATTGAATCCTTTTAATCCTAATTATCTTGAGCAGGACCCCAAACTATTTCCCACCCATgtcctcttcaccctctccctAATCCAAGTACCCCACCCCAGTCCCCTTCCTTCCCAAACGCCCATGTCAGATTCTGTCCCAATACGACCAGCTCTTCCAAAGACTGTCCGCACGGCAGGCCAAGTTATTATCTTGTGCACTAGATCTAGAGCCTGTCATCCTACCTTTGTTGTATAAGTGCAATGAATTAAGTCTCCATTGTGTCCAGAGAAATACtaaaaaacaatgttttaatCTGCCAACACATATTGAGAACATATTCTTGGATTTCTTAAAACAAAATTGTGACTGACATTAGGGTTGTGAATAAAGTTCAGCATCCCACTACAATAATGTTGAAATACCAATATAGTTGATCAATACAGTAATATTGCAATTGAATTAATGCTAACAATTGCATTGTCAATGTAAAAGCTAATGACAATGATAACAAGTAATCCCCTCAACACTCTCAAACCCTCATTGAAGACAAATAAATATGACTGCTCATAAACATCATATGGATTTCCCTTGCAAAACTCTGATGGTTTgttgtttttcagtttttgttgtaTATAAAAGAGAAAATAAACCGTGGAAACAGTACACGCTACTGTGCACAACCTTTAGATAGTGTACATGTGCTTCTGGATAAGGGAAAGGGATTTTGACCACATTGCTAAATTGTAAGACAAGAGTAGTCTAGCCTTGCAGACCAGAGGAACTGTTTAATACAAGTCACACATAATGCCATATCTGTATCCCGTTGAATGTTTCCAAAAAGAAGCCTAGCTACATTTATGGTTGTCTTAAGTTGCCATTACTATTTATATCATCCAGTTTTTTTTCTCTGAAGCATTTCGATGTCAATAGCGCTCACTGCTCCCACCTACCCCAACTCAccattccctccctctttcatctTCCTCCGTCTGTTCCTGCAACCTGAACACGTCAGATGTTTCTGTTTtgtagcattttttttttaaaacatgcgTTTGCTATGATGTATCATAGAGTTGATAATGGTATTTGCACTTGAAAATTGTTATTTCTCATGTAAAAATGTCTGGATTTTGTATTGTCTTTTTAAATGAATGGAATTGGTGTTCTTACATTTCTTGTAGCTCTCGTTTGTTCTTTAAAATGCTCATTCACTGTGTTCAACCCATAAAGATGAAGATGCACACGTACATGTAACTTTATCaactgtcaaaaaaaaaaaaaaataagtcaAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1581250 lncRNA downstream 18854 49384035 ~ 49390274 (-) True G1384400
TU1581275 lncRNA downstream 103995 49303471 ~ 49305133 (-) True G1384420
TU1581274 lncRNA downstream 105088 49303471 ~ 49304040 (-) False G1384420
TU1581246 lncRNA downstream 130630 49277989 ~ 49278498 (-) True G1384397
TU1580235 lncRNA downstream 157189 49251696 ~ 49251939 (-) True G1383506
TU1581416 lncRNA upstream 39229 49556496 ~ 49557490 (-) True G1384554
TU1581564 lncRNA upstream 251294 49768561 ~ 49768975 (-) True G1384695
TU1581572 lncRNA upstream 256736 49774003 ~ 49775982 (-) True G1384703
TU1581791 lncRNA upstream 580735 50098002 ~ 50103021 (-) False G1384896
TU1581792 lncRNA upstream 580735 50098002 ~ 50103021 (-) False G1384896
XR_002468972.2 mRNA downstream 149492 49258037 ~ 49259636 (-) True LOC110492191
XM_021566279.2 mRNA downstream 212422 49179653 ~ 49196706 (-) False LOC110492187
XR_002468971.2 mRNA downstream 212422 49179653 ~ 49196706 (-) False LOC110492187
XM_021566278.2 mRNA downstream 249277 49146817 ~ 49159851 (-) True LOC110492186
XM_021566282.2 mRNA downstream 326294 49076567 ~ 49082834 (-) True LOC110492190
XR_002468974.2 mRNA upstream 17613 49534880 ~ 49543355 (-) False si:ch73-217n20.1
XM_021566288.2 mRNA upstream 17613 49534880 ~ 49543357 (-) True si:ch73-217n20.1
XM_021566290.2 mRNA upstream 35893 49553160 ~ 49570713 (-) False pfkfb2a
XM_021566291.2 mRNA upstream 35893 49553160 ~ 49570715 (-) False pfkfb2a
XM_036947152.1 mRNA upstream 40722 49557989 ~ 49570716 (-) True pfkfb2a
TU1580193 other downstream 212802 49184308 ~ 49196326 (-) True LOC110492187
TU1579549 other downstream 1096170 48282213 ~ 48312958 (-) True G1382894
TU1579359 other downstream 1462906 47943379 ~ 47946222 (-) True G1382721
TU1579060 other downstream 1960263 47425312 ~ 47448865 (-) True LOC110492148
TU1577598 other downstream 2319598 47087169 ~ 47089530 (-) True LOC110492137
TU1581430 other upstream 85851 49603118 ~ 49719539 (-) True LOC110491086
TU1581769 other upstream 547554 50064821 ~ 50065817 (-) True G1384875
TU1582569 other upstream 1538364 51055631 ~ 51056061 (-) True G1385645
TU1582822 other upstream 1573378 51090645 ~ 51128648 (-) True G1385888
TU1582837 other upstream 1596136 51113403 ~ 51115065 (-) True dffb

Expression Profile