RNA id: XR_002468974.2


Basic Information

Item Value
RNA id XR_002468974.2
length 2407
RNA type mRNA
GC content 0.46
exon number 14
gene id si:ch73-217n20.1
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49534880 ~ 49543357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTAGGCCTACAAAGCTACTCGTCATTTTACGTTACCTCCCCTCCAACTACAAAATATAACCCAGTCGACATACTATTTCATTAAACTCAATAACGTTTAAACGGGTGAGCGTACAGATCCGAATGCACATGAAACGATGAATCTGGTGTATAATGTCGTGTTCTTCTTATCACTTGCCCTACATGCCTCAGCTCAAGTTCCATCGAAATGTGGTGCGCCGCCGTCCTATCCACACACGCAAATCGAGGACATGAAAAAGGGTATATTTGGCCATGTACAAAAAGTCCTCTACAGATGCGCCGAGGGCTACACTCAGAACAGTGGCATTCGCTCTATCAAGTGTCAAGCTGGAAAATGGACACAGTTAACCATGACGTGTGAAAAGAAGAACTGTGGATCTGCTGGGGAGTTATTCAATGGATACTTTCACTATATGGGGGCTTTTTTCGGGGACAAAGCAAATGCAGTGTGCAATGAGGGGTTTACACTGAAGGGGATGGAATACAGAATATGTAAGGACTCTGGCTGGAGTGGAGAGATTCCCACGTGTGAAGAGGGAGGTGAACCACAAGTGGTTCCAGCAGAAGTGACCTGCCCTGCTCCTTCAGTGGCCAACAGTGTGAAGCTCAGTGAGACTGTCTCAGTGTACAGGGTCAGAGACTCAGTGACCTTGGTCTGCTCCGAGGGCTTCCTCCTGACTGGAGCCCAGCAGCTCACCTGTGGACCAGACGGCCAGTGGCAGCCCGAGCTCCCACTTTGTCTGCCCTCTGTCGGAGAGATCACTTGCAATGCCCCCAATGCAAAGGGGAAGAGGTTGATCAATGGGTTGAAGCAAGTTTATAGATCTGGAGATTCTTTGTCCTTTTCCTGCAAGGACCTTTATTATTTGGATGGATCGAACACTGTCACATGTGGGGTTGACGGAAAATGGACTCCTTCTCTTGCACAGTGCATACAGATTAAGTGCCCTatattaaacataacaaatggTAGGCCATCCATCAAGCAAAGAAGATTTGGATCAGATGTAACCATTTCCTGCTTTAAAGGAAACCTGCTAAAAGGTGCTGCCCGCATAAAATGTTCAAGATCTGGGGAATGGAAGGAAAAGATTCCACAATGTGTGCCAGAGGGAGGTGAACCACAAGTGGTTCCAGCAGAAGTGACCTGCCCTGCTCCTTCAGTGGCCAACAGTGTGAAGCTGAGTGAGACTGTCTCAGTGTACAGGGTCAGAGACTCAGTGACCTTGGTCTGCTCCGAGGGCTTCCTCCTGACTGGAGCCCAGCAGCTCACCTGTGGACCAGACGGCCAGTGGCAGCCCAAGCTCCCACTTTGTCTGCCCTTTAATGATATAATTAAAAGCCCCAAGCCTGATGGCAGATGTGGAGTGCCACCGTACCTCTCCAACGCACACCTTTCTGACTGCTGTAGAGCACAGGTAGATTTTGGTCCTGGTCACCGGGTCAGGTACAGTTGTGCCTTGGGATACATGAGAGTAagaggcacttactatagtaccTGCGTCAGTGGGAGGTGGACACCAGTAACTCTGAGATGTGAACGCAAATCATGTGGCTCAGCTGGAGAGATGTCTTTTGGTCATTTCGTCTATACCGGTGCACAGTTTGGAGATACAGCCACAGGGGTTTGTAATGAGGGGTATCAGCTGGTTGGACAGAATGTAAGAAATTGCATGAATGATGGCTGGGATGGGCGTGTTCCTGTATGTGAAGCGGTGCAGTGTGCTAAACTTCCTGAGGTGGTAAATGGAGAGATAAATGGCCATTTGGAACCACCTTACGTTTACAGCACTGTGATTGGCTATCGGTGTCGCGTAGGAAAACTGATTGGAACGAGTGAGCTCTACTGTACCAAAGATGGGACATGGAGTGCGCCACCTCCAGAGTGCAAAGGGGCATGGTGATGAATGGACCAGGCACCGTCACATGCAGCCTGGATGGGACATGGACTCCTGCCCTTCCCACATGTCAATatcGGCGGTACTGAAGGTCTAATACCATTGATCATTATACTGAATGTCTTCAACTCAACCATTTTACCATAACTTTTACCATAATAATCAAACTCAATGCAttttattataatacattaatatCCTAATGACTGTTGTCTTTAAATACCCCTTCTGTCTTCTGGAATCATGTTATTGTGAATTTTACAGCACTTTTGGTACATATACCcctattttaggggaccaaaagtattggggaaatattcacttgtgtattaaagtaCTCAAAGTTaattatttggtcccatattcatagcacacaatgactgCATCAAACATGTGACTCTACAAATGTGTTAGCAAATGCATCTGTTTGCTTTGTTTGTTTCCGATTATTTTGTTTACAATAAAAATGTTAAATTCTGcgttgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1581337 lncRNA downstream 124197 49409445 ~ 49410683 (-) True LOC110492195
TU1581250 lncRNA downstream 144606 49384035 ~ 49390274 (-) True G1384400
TU1581275 lncRNA downstream 229747 49303471 ~ 49305133 (-) True G1384420
TU1581274 lncRNA downstream 230840 49303471 ~ 49304040 (-) False G1384420
TU1581246 lncRNA downstream 256382 49277989 ~ 49278498 (-) True G1384397
TU1581416 lncRNA upstream 13141 49556496 ~ 49557490 (-) True G1384554
TU1581564 lncRNA upstream 225206 49768561 ~ 49768975 (-) True G1384695
TU1581572 lncRNA upstream 230648 49774003 ~ 49775982 (-) True G1384703
TU1581791 lncRNA upstream 554647 50098002 ~ 50103021 (-) False G1384896
TU1581792 lncRNA upstream 554647 50098002 ~ 50103021 (-) False G1384896
XM_036947149.1 mRNA downstream 17612 49409128 ~ 49517268 (-) False LOC110492195
XM_036947151.1 mRNA downstream 17612 49409128 ~ 49517268 (-) False LOC110492195
XM_036947148.1 mRNA downstream 17613 49409128 ~ 49517267 (-) False LOC110492195
XM_036947150.1 mRNA downstream 17613 49409128 ~ 49517267 (-) False LOC110492195
XR_002468972.2 mRNA downstream 275244 49258037 ~ 49259636 (-) True LOC110492191
XM_021566290.2 mRNA upstream 9805 49553160 ~ 49570713 (-) False pfkfb2a
XM_021566291.2 mRNA upstream 9805 49553160 ~ 49570715 (-) False pfkfb2a
XM_036947152.1 mRNA upstream 14634 49557989 ~ 49570716 (-) True pfkfb2a
XM_036945782.1 mRNA upstream 33157 49576512 ~ 49603440 (-) False LOC110491086
XM_036947158.1 mRNA upstream 242292 49785647 ~ 49789933 (-) False LOC110492200
TU1580193 other downstream 338554 49184308 ~ 49196326 (-) True LOC110492187
TU1579549 other downstream 1221922 48282213 ~ 48312958 (-) True G1382894
TU1579359 other downstream 1588658 47943379 ~ 47946222 (-) True G1382721
TU1579060 other downstream 2086015 47425312 ~ 47448865 (-) True LOC110492148
TU1577598 other downstream 2445350 47087169 ~ 47089530 (-) True LOC110492137
TU1581430 other upstream 59763 49603118 ~ 49719539 (-) True LOC110491086
TU1581769 other upstream 521466 50064821 ~ 50065817 (-) True G1384875
TU1582569 other upstream 1512276 51055631 ~ 51056061 (-) True G1385645
TU1582822 other upstream 1547290 51090645 ~ 51128648 (-) True G1385888
TU1582837 other upstream 1570048 51113403 ~ 51115065 (-) True dffb

Expression Profile