RNA id: XM_021566290.2


Basic Information

Item Value
RNA id XM_021566290.2
length 3647
RNA type mRNA
GC content 0.45
exon number 16
gene id pfkfb2a
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49553160 ~ 49570716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACCTAGttcactctgttcataacagattgtagttttgggaacagaaaactgaaTTGAGATCAAATGTTCCATCGATGAGAACTTGCAGAATTTCGGTCAaaatccatcttctcccactgctggCCACTGAGCTTCCTCTTACTACCAATGTCAGGCGGTTGCTTCACATTTATTTAGatgttttgttattattatttttttttttcatacttCACATTCATACATCCgatgaaatatctgtctcattgttctatctgtgttaCCGGTGTCCATCGTTAGTCAGTGCGCAGGTTGATTTCCTTCCCGCAGTGTCCGGGGGGAGGAGCCAAACAATAGAATACCTCGGAGCTCGACAGCAGACAGATGAAATAGCTACTGTACTGAGTGGTTACTAAGTGACTCACCAAAGCGATACATTGTGTCTGTCGACTCACTTGTTGTCATTTTGAATCCTCTGCAGAGATGACCTCACTTAGCTAGTGTCCTGACCTCTCAGTCCCAGAGAGAGTCCCcagccaggctacctgccgtgaAAGGACCAGTCATTGGACAGTATAGTGACAGTGTGCTGTGTCTACTAGCATCATGGCTGCCAGCCAGCAGAAAGGCACTGCAGTTCTGGAAAGTtcagcagagggaaagagaaCGGAACTCAGGGCTAATGAAGTACTGAAGAAATGCTCATGGGCCTCTTACATGACCAACTCCCCCACTGTGATTGTGATGATTGGTCTTCCTGCCAGAGGGAAAACCTACATGTCCAAGAAGCTAACCCGCTACCTCAACTGGATAGGAGTGCCAACCAAGGTATTCAACCTGGGGGTCTACAGGCGAGAGGCTGTGAAAGCCTACAAGTCCTATGACTTCTTCAGACACGACAACGAGGAGGCCATGGAAATCAGGAAGCAGTGtgctctggtggctctgcaggaTGTCAAAGCGTATCTGGCTGAAGAGGGGGGTCAAATCGCTGTCTTTGATGCCACAAACACCACccgagagaggagagaattacTCCTTAGTTTTGCAAAGGAACATGCTTACAAGGTGTTTTTTGTGGAGTCATTGTGTGACGACCCTGATGTCATTGCTGCTAATATTATGgaTGTGAAGGTGTCCAGCCCAGACTAcccagaaagagacagagagagtgtgatggAGGACTTCCTGAAGAGAATAGAATGTTATAAAGTCATGTACCAACCATTAGACCCAGATGAACACGACAAgGACCTGTCCTTCATCCAGGTCATCAACGTGGGCCGGAGCTTCCTGGTAAACAAGGTGCAGGACTACATCCAGAGCAAGATCGTGTACTACCTGATGAACATCCACGTGCACTCTCACTCTATCTACCTGTGTCGGCACGGAGAGAGCGAACACAACGTGGAGGGACGCATCGGGGGCGATGGAATGCTGTCTGTTCAAGGGAAAAAGTTTGCTGGAGCGCTGAAGGGTTTTGTGGAGCAGCATGGTCTGACAGACCTCAAGGTGTGGACCAGCCAGCTGGGACGGACTATCCAGACTGCTGAAGAGCTCGGGGTGCCCTACGAGCAGTGGAAGATACTCAACGAGATCGATGCCggtgtgtgtgaggagaTGACCTATGAGATGATTGAGGAAACCTTCCCTGCGGAGTTTGCCTTAAGAGATCAGGACAAGTACCACTACCGCTACCCAGGAGGAGAGTCCTACCAGGACCTGGTGCAGAGGTTAGAGCCGGTCATCATGGAGCTGGAAAGACAAGGCAACGTGCTGGTTATCTGTCACCAGGCTGTCATGCGCTGCCTGCTCGCTTACTTCCTGGATAAGAGTGCTGATGACCTGCCCTACTTGAAGTGTCCCCTCCACACAGTTCTAAAGCTCACCCCTGTGGCTTACGGTTGTAAAGTGGACATGTTTGACCTCAAAGTGGAGGCTGTGAACACTCACCGGGACAGGCCATTAGATAAAGTCCGTAATGACGTTGTTCCCACCACATTCCTCCGGAGGAACAGTTTCACCCCGCTGTCCAGTCACGACCAGGTGAAGCGACCGCGCCTCTACAGCGCCGGCAACCCACCTCAATCTCGACGGCCCCTGGCCCCCTTTATACCCAGCATGCAGTCCTTCGAGGACCCTGAGGGAGCAGAGTTGACACGAAGCCAAGAGTCTCTCAACTGCTTCAGCCCAGGGGACTCAGAAGATGCTGTTCGCAGTTGAAGAGGACAGAGACTGGGGGCTCCACTCCCCAACATCCTCTCTgctatcagacctgggttcaaatactattttaaatgTTTGTACATAGCTTGAatgtttgctttagcctgccaggagtgccagatgggcagtGTTTGCACTTTGGGGGCTTTTCTATTGATTTCATTTCAACATGCAAGCACAGCTGAAGTATTTGacatgatttcaaatagtatttcaaCACAGGTGCCCTCTGTATGTACCTACTGTACCGCTCAGGCCTGCTACATACCATGCCAGCCTTACCAGTTTGATTGTCAAGCAGTGGTTCAAGCACAACACCTCAGCCACAAATGGTCACAGCGTGTGGTTGTTGTAGTGGCCAAAATTTGTTCTACAGCTGTTTAGTTTCTGTTGACATCTGTTAGATAGATATTGTGGTTGTGTTAGGGTGAAGAGCGAGATGATTTGAGAAAAACATGgccttgcttgcacacacacttatcaacatTCAAAGTTGAATTTACTCTAAACAGAACTTTGGGATGTTTAAATAGAGGATATCTTTGAGGAAATTTGTCTTAGTGTAAAATAAATTGTATAAATCTACTAAGTCCCTTATGGAAGGGGTTGCCACATGGTAACACTGAACATTTTATAAAAAACAAAGCACTTACTAGAAACACTGTCTTATCCTTTGTCTATAATGTATAATTACTTAAGCTCTTATGAATAATATATGTACCTCTTAAATTGGATAGTTGAATATCATCGTTTTTGAACAGCCTTGTGACCAACTGTTATTCCTCCGTTAGGCTGAAAGACCACCATACAGGATTTAACatttcagctcagggattcatgTTATTGGTTAGTCACATGTTACTGTCACAGGTtacatttctgtgtgtgtatagttCACATTTTACTCTGCAATTCGGTTACATATTTATCGTCATGTTATGAAATACCAATTTATTTGCATTATAGATGCATCCATTACACGTCTTCAGCTAAAATGGCAACTACTACTGTAGTTCCAGTTAATGCCAGCATTTATTCTTACATTTGTTAAAAGGACATTGTGTTTTTACTTTTCCTAACGTTATCTGCATGATTTTGAATTCTGGAAAAGCACAGCATAAGGAAAGAAACTGTAGGTACGTTCATACTTAAACTTCACTGATCTTGCCCAGCTATGTGTATCTTATTGTTAATTACTGCTATAATTATATATGTTAAATGTGATGCTGCTCTAAAGTGCCTCTGTGACTGTGTTTAGTAGCATTACTTTTGTGGCTCTTGCAAGGCTATgttattatataaataggcaGAAAACCGTAGCCTGTAAGACTACAGTATACTGATCTGTATACTAGCACTATGCTGTAAAATTATTTAAATCACTGGAATATTAGTCTTATGAGTGTAAACGATTCAATAAATGAATGTATCTGTCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1581337 lncRNA downstream 142477 49409445 ~ 49410683 (-) True LOC110492195
TU1581250 lncRNA downstream 162886 49384035 ~ 49390274 (-) True G1384400
TU1581275 lncRNA downstream 248027 49303471 ~ 49305133 (-) True G1384420
TU1581274 lncRNA downstream 249120 49303471 ~ 49304040 (-) False G1384420
TU1581246 lncRNA downstream 274662 49277989 ~ 49278498 (-) True G1384397
TU1581564 lncRNA upstream 197848 49768561 ~ 49768975 (-) True G1384695
TU1581572 lncRNA upstream 203290 49774003 ~ 49775982 (-) True G1384703
TU1581791 lncRNA upstream 527289 50098002 ~ 50103021 (-) False G1384896
TU1581792 lncRNA upstream 527289 50098002 ~ 50103021 (-) False G1384896
TU1581793 lncRNA upstream 527289 50098002 ~ 50103021 (-) True G1384896
XM_021566288.2 mRNA downstream 9803 49534880 ~ 49543357 (-) True si:ch73-217n20.1
XR_002468974.2 mRNA downstream 9805 49534880 ~ 49543355 (-) False si:ch73-217n20.1
XM_036947149.1 mRNA downstream 35892 49409128 ~ 49517268 (-) False LOC110492195
XM_036947151.1 mRNA downstream 35892 49409128 ~ 49517268 (-) False LOC110492195
XM_036947148.1 mRNA downstream 35893 49409128 ~ 49517267 (-) False LOC110492195
XM_036945782.1 mRNA upstream 5799 49576512 ~ 49603440 (-) False LOC110491086
XM_036947158.1 mRNA upstream 214934 49785647 ~ 49789933 (-) False LOC110492200
XM_036947159.1 mRNA upstream 214934 49785647 ~ 49789934 (-) False LOC110492200
XM_021566296.2 mRNA upstream 214934 49785647 ~ 49789935 (-) False LOC110492200
XM_021566295.2 mRNA upstream 214934 49785647 ~ 49789953 (-) True LOC110492200
TU1580193 other downstream 356834 49184308 ~ 49196326 (-) True LOC110492187
TU1579549 other downstream 1240202 48282213 ~ 48312958 (-) True G1382894
TU1579359 other downstream 1606938 47943379 ~ 47946222 (-) True G1382721
TU1579060 other downstream 2104295 47425312 ~ 47448865 (-) True LOC110492148
TU1577598 other downstream 2463630 47087169 ~ 47089530 (-) True LOC110492137
TU1581430 other upstream 32405 49603118 ~ 49719539 (-) True LOC110491086
TU1581769 other upstream 494108 50064821 ~ 50065817 (-) True G1384875
TU1582569 other upstream 1484918 51055631 ~ 51056061 (-) True G1385645
TU1582822 other upstream 1519932 51090645 ~ 51128648 (-) True G1385888
TU1582837 other upstream 1542690 51113403 ~ 51115065 (-) True dffb

Expression Profile