RNA id: TU1581430


Basic Information

Item Value
RNA id TU1581430
length 567
RNA type TUCP
GC content 0.55
exon number 2
gene id LOC110491086
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49576512 ~ 49719539 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTCCAATTTAGCGTCGTTTATCCTTCGACACTCAGTGGGGCAATACGGCGGGCACCAGAAAACATTGTTGATTCGATTCGAATGAGAAGGACCGCCAATCTAACCTGCGTGATATTTTAGACCAGTACCGTTTTCCTTCTCATCACTCATATTGCAGATAAAACGGAATTACAGAATATCAAATCTTGTGCGTCCGACACCCATCTAACAGTCAACGATGAAATAAGGATGAGCCCTCCAGGGCTGTAGACGCGCCCCAGCTGGAGACATGTTCTAAGGGCAGCAGGAGACCTGCGCTGTGACAACTATGAAAGGGTTAGGAGCCAATCGCAGCCGTCACCTGTCGGACTCCTGTGAGCCATCGGGGGCCCCAAAGAAGCCCCTGTACCCCTTGACCTCTGACGCCCACGGCCCCTTCCTTCTGAGCCCCACCATGAACCACTACGGCACCCTGGACCCCCACCAACTCTACCAGGGCCCCAACCCCCAATCCCTGCCTTCGGAGTGCCTGCTGCCCCTCAACCAGATGTCCAACAGCAGCACCTTCCCCCGCCTCCACTTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1581416 lncRNA downstream 45628 49556496 ~ 49557490 (-) True G1384554
TU1581337 lncRNA downstream 192435 49409445 ~ 49410683 (-) True LOC110492195
TU1581250 lncRNA downstream 212844 49384035 ~ 49390274 (-) True G1384400
TU1581275 lncRNA downstream 297985 49303471 ~ 49305133 (-) True G1384420
TU1581274 lncRNA downstream 299078 49303471 ~ 49304040 (-) False G1384420
TU1581564 lncRNA upstream 49022 49768561 ~ 49768975 (-) True G1384695
TU1581572 lncRNA upstream 54464 49774003 ~ 49775982 (-) True G1384703
TU1581791 lncRNA upstream 378463 50098002 ~ 50103021 (-) False G1384896
TU1581792 lncRNA upstream 378463 50098002 ~ 50103021 (-) False G1384896
TU1581793 lncRNA upstream 378463 50098002 ~ 50103021 (-) True G1384896
XM_036947152.1 mRNA downstream 32402 49557989 ~ 49570716 (-) True pfkfb2a
XM_021566291.2 mRNA downstream 32403 49553160 ~ 49570715 (-) False pfkfb2a
XM_021566290.2 mRNA downstream 32405 49553160 ~ 49570713 (-) False pfkfb2a
XM_021566288.2 mRNA downstream 59761 49534880 ~ 49543357 (-) True si:ch73-217n20.1
XR_002468974.2 mRNA downstream 59763 49534880 ~ 49543355 (-) False si:ch73-217n20.1
XM_036947158.1 mRNA upstream 66108 49785647 ~ 49789933 (-) False LOC110492200
XM_036947159.1 mRNA upstream 66108 49785647 ~ 49789934 (-) False LOC110492200
XM_021566296.2 mRNA upstream 66108 49785647 ~ 49789935 (-) False LOC110492200
XM_021566295.2 mRNA upstream 66108 49785647 ~ 49789953 (-) True LOC110492200
XM_036947160.1 mRNA upstream 82444 49801983 ~ 49818543 (-) False LOC110492201
TU1580193 other downstream 406792 49184308 ~ 49196326 (-) True LOC110492187
TU1579549 other downstream 1290160 48282213 ~ 48312958 (-) True G1382894
TU1579359 other downstream 1656896 47943379 ~ 47946222 (-) True G1382721
TU1579060 other downstream 2154253 47425312 ~ 47448865 (-) True LOC110492148
TU1577598 other downstream 2513588 47087169 ~ 47089530 (-) True LOC110492137
TU1581769 other upstream 345282 50064821 ~ 50065817 (-) True G1384875
TU1582569 other upstream 1336092 51055631 ~ 51056061 (-) True G1385645
TU1582822 other upstream 1371106 51090645 ~ 51128648 (-) True G1385888
TU1582837 other upstream 1393864 51113403 ~ 51115065 (-) True dffb
TU1583828 other upstream 2263595 51983134 ~ 51989995 (-) True LOC110492226

Expression Profile