RNA id: XM_021566296.2


Basic Information

Item Value
RNA id XM_021566296.2
length 2248
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110492200
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49785647 ~ 49789953 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGTGTTTACCATGCTTGTTTGCTAGCTTGCTTGTTTTGGTGCAGTTAATACTTGTAAATTAATTATATTTAAACATATGTTGGGGTCAAAGTTGATTTCGCTGCACTTCAATTTTTTGACCTGCAAAACTGGCTAAAGGAAACGGTACGATTAAACAGTTGTGAGGTGAGGCATATCAAAGAAAGACCTATCTGGGCACATCATGTCATCATTTTCTGAGTCTGCGTTGGAGAAGAAGCTTTCGGAGCTCAGCAACTCTCAGCAGAGCGTTCAGACGCTGTCTCTGTGGATCATTCATCATCGCAAACACTCGTCGCTCATCGTCAAAGTATGGCACAGAGAACTGAAGAAAGCAAAAAGCAGCAGGAAGTTGACGTTCCTTTATCTTGCCAATGATGTGATTCAAAACAGCAAGAAGAAAGGTCCAGAGTTCGCCAAAGACTTTGAGACAGTCCTTGTTGATGCTTGCTCTCATGTTGCAAGagagGCTGATGATGGCTGTAGAAGGCCCATGGACAGGCTGCTCACTATCTGGCAGGAGCGCAGCCTCTACAAGGTAGAGTTCATCCAGCAGCTGAAGCTCGCCATCGAAGACTCTAACAGCCCCCAACACCAACCCACAGAAGAGAAGAAGGCCCCTAAACGGACCTATCAGAAAATCCAGGAgctggaagaagaggaagaagatgaCGACTACAGGGGCCACATGTCCCCACAGGATTCAGACATCTCAGGGCCACAGCTGacGGAGGAGCTGGTCAAAGCCCTGCAGGACCTAGAGAATGCGGCCTCGGGTGATGCTGCTGTGCGCCAGAAGATTGCCTCTCTGCCACAGGAGGTGCAGGATGTGTCCCTGCTAGAGAAGATTACTGATAAGGAGGCAGCTGATAAACTGTCCAAGACGGTGGATGAGGCCTGTCTACTGCTGGCTGAGTATAACGGACGTCTGGCTGCTGAGCTGGAGGACAGGAGGCAGCTGGCGCGCATGCTGACAGAGTACATCGGTAGCCAGAAGGAAGCCCTCACCGAGAGGGAGAAGAAACTGGAGGAGTACAAACAGAAGCTGGCACGGGTCACACAGGTGCGCAAGGACCTCAAGTCCCACATCCagagcctgcctgacctctctCTGCTGCCCAATGTGACGGGAGGTCTGGCTCCTCTACCCTCTGCTGGAGACCTGTTCTCCACCGACTGAGCTCCCTGCCACACCCTGCCTCTTGCCAGGGCACACACTGTTGAACCTGCTCTCTTGCTACTGAACCCTAGGGAGAGGCTCAGAGGGACAGTGGGAGCTTGGGGACATCCCTGGTGGGGGAGACAATGGCTGTTGACGATTCTGTTCCACCAGCTTGGACAAATTTCTCCTGTTTGTTTTTATTGTGAATGCCAGCTAACTGATTCTGCGTTGGAAAGAAGAGAAGTGTTGGTCATCAGCCAATCCCCATTTTTCTGCATTGTTTATGTGCTCGTATGGTGGGATGGTGGCTCACACACCCACTAGATCTTTATGAAGAGATGCATCTCATTTATTTTAATGGCTTTAAAGTTGGTTGATTTTTGTAATGTTGGGGAGGGGGGGATGTTTTTCTATGTAggttatattttgtttgtgatATTATTTTCATCTTCCATTATTCCAGCTCAACACTTTTCAGGTCTGTCGTCATGCATACCAATCATCAGTCGATACCGTTACAACCATGTGGTAGTTTTTCTCAATCCAATGTGAAATATTTTAGCCCTCAGACATGTGGTTGATAGAAGTTATGAGAGCGAACTTGGGGCAGTTGGAGACACTGACTTACAGTCACTTAGAAACACGTGTCCATAAAATGGTCTTTGATGATTGCATCACTTGGTACAAATGTCAAACTAACTAGCAGACTGATGCTTTTCAGGGCTGTGCCTTGCCACCAATTATTCAGCATTATTCAGACTTGACAGAGTAGCAGAATCTGAACTGGCTCACGGTTCCTTCTGTCACCGCTGCAGTCCTTCCTTCCTCAGGAGTCAATCGTTAACTCAGTTTTACGATGGTTGACAATCTGATTTCTGCGATCTCTTAAGTTTGGATTATGGATCCTGGGAGATAAGTGCTTGTCAATGTTACAGAATGCAGTAGGAGTAATAGGAGGGCATCTGCCCCAAGAAATGATGTTTTGCAGATAATGTACTAAAGCTGTAGtttttcagtaaaaaaaaacaaatccatggatacaaataaaattgaacaattggaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1581572 lncRNA downstream 9665 49774003 ~ 49775982 (-) True G1384703
TU1581564 lncRNA downstream 16672 49768561 ~ 49768975 (-) True G1384695
TU1581416 lncRNA downstream 228157 49556496 ~ 49557490 (-) True G1384554
TU1581337 lncRNA downstream 374964 49409445 ~ 49410683 (-) True LOC110492195
TU1581250 lncRNA downstream 395373 49384035 ~ 49390274 (-) True G1384400
TU1581791 lncRNA upstream 308067 50098002 ~ 50103021 (-) False G1384896
TU1581792 lncRNA upstream 308067 50098002 ~ 50103021 (-) False G1384896
TU1581793 lncRNA upstream 308067 50098002 ~ 50103021 (-) True G1384896
TU1581833 lncRNA upstream 419373 50209308 ~ 50210181 (-) True G1384934
TU1581831 lncRNA upstream 421566 50211501 ~ 50215831 (-) False G1384933
XM_036945782.1 mRNA downstream 182207 49576512 ~ 49603440 (-) False LOC110491086
XM_036947152.1 mRNA downstream 214931 49557989 ~ 49570716 (-) True pfkfb2a
XM_021566291.2 mRNA downstream 214932 49553160 ~ 49570715 (-) False pfkfb2a
XM_021566290.2 mRNA downstream 214934 49553160 ~ 49570713 (-) False pfkfb2a
XM_021566288.2 mRNA downstream 242290 49534880 ~ 49543357 (-) True si:ch73-217n20.1
XM_036947160.1 mRNA upstream 12048 49801983 ~ 49818543 (-) False LOC110492201
XM_021566297.2 mRNA upstream 12048 49801983 ~ 49833165 (-) True LOC110492201
XM_021566299.2 mRNA upstream 50163 49840098 ~ 49880822 (-) False LOC110492202
XM_021566300.2 mRNA upstream 50163 49840098 ~ 49880822 (-) True LOC110492202
LOC110491088 mRNA upstream 137529 49927464 ~ 49933750 (-) True LOC110491088
TU1581430 other downstream 66108 49603118 ~ 49719539 (-) True LOC110491086
TU1580193 other downstream 589321 49184308 ~ 49196326 (-) True LOC110492187
TU1579549 other downstream 1472689 48282213 ~ 48312958 (-) True G1382894
TU1579359 other downstream 1839425 47943379 ~ 47946222 (-) True G1382721
TU1579060 other downstream 2336782 47425312 ~ 47448865 (-) True LOC110492148
TU1581769 other upstream 274886 50064821 ~ 50065817 (-) True G1384875
TU1582569 other upstream 1265696 51055631 ~ 51056061 (-) True G1385645
TU1582822 other upstream 1300710 51090645 ~ 51128648 (-) True G1385888
TU1582837 other upstream 1323468 51113403 ~ 51115065 (-) True dffb
TU1583828 other upstream 2193199 51983134 ~ 51989995 (-) True LOC110492226

Expression Profile