RNA id: XM_021566297.2


Basic Information

Item Value
RNA id XM_021566297.2
length 2238
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110492201
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49801983 ~ 49833165 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCCAGAGCCGAACGAGCTGAAGCGAGGTATCAATCAGCGATTTGCACTAGAGGGTGGCTGCACCATCAAATCGCTTCATATCTGCGATCTGCGCTTTTGTTTAAAATCCGGGTCTATCTATACAACACGTTGCCTGGATTTGATCTTGTAAACTTAGTACACCTAATGTGAGAGAGTGGCAAAGAATACGGAATCTCAAATAAAAGAGATGGGAGCCTTTGGGGTAATAGTAGGGACTTTACATTACATGGGACTCTACATCCAACTTAGTGCCTCCACAAGGCAAGGTGGACATGCAGAGGTAGAGAACCACATCTCCGGGAACGCTGTGTTCACAGAGGTCCCCCATGACATCACAGCACAGAGTGGCCAGGACGTGGAGATGGCGTGCTCCTTCCGGGGGGCAGGCCCCTCCTACTCCCTGGAGATCCAGTGGTGGTACATCAGGAACCACAGAGACTGGACAGAGAAACAGCCCTGGACCTCCAATCAGGTTGTACCCCAGGACGAGAGGTCAAAGGATGCTACCAAAATAAGTGTGGTAAAGGTTGCTGGGAGCAACATCTCCCACAAGTTGCGTCTGTCCAGCGTGAAGCCGTCTGACGAGGGCACGTACGAGTGCCGCGTGATCGACTTCAGCGACACCGATAGCAATGCCCGCCACCACAAGGTGAGGGCCTACCTACAGGTGGAGCCAGAGAGCAACCATAACCCGGCGCTGCGCCACCATGGGGCCAACTTTCAAACCAAGGACACCAAGGTTCTGGCAGGCAGCGGCCACCAGCCGGAGCATGGCAAGCACTCGCCAGCAGCCCACCACAGCCACCACAAACCAACAGGCACTGGCAGGGAGCTGAGGAAGAGGTCTGCTGAGGATGACAGCGCTACTGACTGCACTGACAGCTGTCCTCTAGGCCTCACAGCTCACCCATAACCTCCCTAATCTGCTCTGGCCTCAGCTCCAAGCTCCAACCTTGTCCTACACCCCAGACGGGCAAGTCCAGTCCTGGAGGACCACAGTGTGTAGAGACTTTTGATTCAACCACCCCAGCTGTAACATACATGATTAAACTAAAGTCTCTGTACACACCGCTTCCCCTGTTGCGTACCCCTGCCCTCTGCCCAACATGCACACACCAAATGGACTCTGGTGCCACCCCAGTCCTATACCTtggcctctctcatctccccttaCACTGCCCTAACGCAACAATGTCCCACCAAAAACACCTCAGCTCcactcccagtcccagccccctCTTTCTATATCACAACCCTctagatcaggggtgtcaaagtcattTTTCCCCGGGGGCCACATTCCATTTTCAACGAGGTCCAGAGGGCAGCACTGAAAATTGGTTACATTTCCTCACCGTCAAAATTAGCTAAAAACTGTCCTATATCCATAGTTTTGGGAATTTATGACGCTCCCTGACTCTCTAGCTTTTATTTCTGTGAATATCAGCGAGCTGGACCTAGTcaagaaactgtatgaatgtTGATACATTATAATTTTTACACAGTTttgatttggttttagtcattttaaagtatattgaCTTTGCCCCCCCCAAATATCTTTAAATCCACCTCGCAGGCCGGATTGGACCACCTCGCGGGCCGGATCCGGGccgtatgtttgacacccctACTCTAGATGGTCTACACTCTATAGATTACTGTATAAAATGACGAAGTGAGTGCATGTTCAACATGTTTTCTTAGAATGTTTTTCAACCATCCATGAGGAAATACAGTTTTAAGTTGGACAGTTCACTTATTGCTTTGTTCATTCATTTTGGTTTGTTAATATCTTAAGTTACTCTCCGTTTCTATGTTGCATTTGATTTAGCCAAAGTAAGATAGAGAATACTTGTTTATTTTTCTCAGCAGTTCATTTGCTGCCTCTCTATGGGCAACTTCATGGAGAAATAGAATTTGCTCACTTTAATTTGGCCAAAGCTGCTTTGTTTGATGAAAGGTTTCCTCTCAACCAGATCTAAACCAATGTTTATCAAATAAAACCTGTTTGTGGTGTTTTCTGCTTTCCCTACAGACTGAATGTGGCATTGTGAAAGACATGGATTAAAGGAACTGTTTCTAGCTCTTAACTTTGCTTTAATGTTTTGTAAGAAATCattataaaaatgtatattttagaaTTTCTTCTAGGTTGTTGGTCTCGCACTAAATGTATGCCTTTATCAAATTAAATAAATTGTACATGAACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1581572 lncRNA downstream 26001 49774003 ~ 49775982 (-) True G1384703
TU1581564 lncRNA downstream 33008 49768561 ~ 49768975 (-) True G1384695
TU1581416 lncRNA downstream 244493 49556496 ~ 49557490 (-) True G1384554
TU1581337 lncRNA downstream 391300 49409445 ~ 49410683 (-) True LOC110492195
TU1581250 lncRNA downstream 411709 49384035 ~ 49390274 (-) True G1384400
TU1581791 lncRNA upstream 264837 50098002 ~ 50103021 (-) False G1384896
TU1581792 lncRNA upstream 264837 50098002 ~ 50103021 (-) False G1384896
TU1581793 lncRNA upstream 264837 50098002 ~ 50103021 (-) True G1384896
TU1581833 lncRNA upstream 376143 50209308 ~ 50210181 (-) True G1384934
TU1581831 lncRNA upstream 378336 50211501 ~ 50215831 (-) False G1384933
XM_021566295.2 mRNA downstream 12030 49785647 ~ 49789953 (-) True LOC110492200
XM_021566296.2 mRNA downstream 12048 49785647 ~ 49789935 (-) False LOC110492200
XM_036947159.1 mRNA downstream 12049 49785647 ~ 49789934 (-) False LOC110492200
XM_036947158.1 mRNA downstream 12050 49785647 ~ 49789933 (-) False LOC110492200
XM_036945782.1 mRNA downstream 198543 49576512 ~ 49603440 (-) False LOC110491086
XM_021566299.2 mRNA upstream 6933 49840098 ~ 49880822 (-) False LOC110492202
XM_021566300.2 mRNA upstream 6933 49840098 ~ 49880822 (-) True LOC110492202
LOC110491088 mRNA upstream 94299 49927464 ~ 49933750 (-) True LOC110491088
XM_021566302.2 mRNA upstream 99914 49933079 ~ 49938888 (-) True e2f1
XM_036947161.1 mRNA upstream 117500 49950665 ~ 49971291 (-) False itchb
TU1581430 other downstream 82444 49603118 ~ 49719539 (-) True LOC110491086
TU1580193 other downstream 605657 49184308 ~ 49196326 (-) True LOC110492187
TU1579549 other downstream 1489025 48282213 ~ 48312958 (-) True G1382894
TU1579359 other downstream 1855761 47943379 ~ 47946222 (-) True G1382721
TU1579060 other downstream 2353118 47425312 ~ 47448865 (-) True LOC110492148
TU1581769 other upstream 231656 50064821 ~ 50065817 (-) True G1384875
TU1582569 other upstream 1222466 51055631 ~ 51056061 (-) True G1385645
TU1582822 other upstream 1257480 51090645 ~ 51128648 (-) True G1385888
TU1582837 other upstream 1280238 51113403 ~ 51115065 (-) True dffb
TU1583828 other upstream 2149969 51983134 ~ 51989995 (-) True LOC110492226

Expression Profile