RNA id: LOC110491088


Basic Information

Item Value
RNA id LOC110491088
length 2006
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110491088
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49927464 ~ 49933750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCGATACACACACCAGCAGCAAACAGATCTGAGGCTGAAGCATGTCAATCTGGAAGTCCATGACAACCACACGGCCCACCAGACACAGGGCCTGAGCTCCAGGCACCTGGTGGTACGGCGCGGGAGGCCTTTCAAAGTCACCATGCTGTTACATGGAAGAGTGTTCAACCCACAGATGAAGACACTCATCTTTACTGCCCTGCTGGATGATACAGTGTACATCCCTTTTGAAGACCAGAGAGATGAGTACGTTAAAAAGGACTTTGGATTTTTGTACATGGGCACTCCTCACAATGTCATATCAAGACCATGGTCATTTGGCCAGTATGAACAGGGGATACTGGAGATTTGCCTTAACATCCTCCAGGTCAGCCCACAACACAGCAAAGACAAGCAGGGAGATGACCTCCTCCGTGCAGACCCTGTCTACATCTGCAGAGTTGTGTGTGCCGTGATCAATTGTGAAGATGATCGAGGTGTCTTGAAGGGGAACTGGTCAGGAAACTTTAAATATGGTGCAATGGACGGGCAGCGCAGACATCTTAAAGCTCTGGGGCCGATCCAATTTCAGCCCTGTACGGTACGGCCAGTGCTGGGTCTTTGCCTCAGTCATGTGTACAGTTATGAGAGTTTTGGGGATCCCATCAAGAGTTGTCACAATCTTTAACTCCGCCCATGACACCAATGGAAGCCTGGTCATCGAGGAATATTACACCAACACTGAGGGGGAAATCAGCATGTCCAAGGACAGCATATGGAACTTCCATGTGTGGGTTGAATGCTGGATGTCACGACCAGACCTGGGCCCAGGGTTTGATGGGTGGCAGGTATTGGATCCAACTCCCCAGGAGAAAAAATGATAACATCTGCAACACTCTGGGGGAATATTCTGCTGTGGTCCGTGTCCAGTGAAAGGCATCAGAAAGAGACGTTATGACGCCTTGTACGACGCTCCATTCATATATGCGTCGGTCAATGCGGACGTTGTCACTGTGATAGTGAGGGATGGGCTAGTGTTGGGGAGGAGTGTGGACACGCAGAGGGTCGAATCTCACATCCTCACTAAGAACGTGGGCTCTGATGGACCCCAGAGCCTCACCTGTGCTTACAAGTGTAATGAAACAACAGTTCAGAGTTTGGAGGTTTCCCTGAAGATTGACAAAGTGCCAACGATGGGGGAGAACATTTGCTTGTTCATCACAAAGTCCCCAAGGTTCTGAAAGAACATGTCAATGCTCAAACCAAAGAATACAACGGTAGCCCACAAGGCACGTTTTGGGAGGCAGATAAGCAGCTTCATTTTGCACCATGAGCAGTTCTGTCGGTTCATCACCAGATCCCATACTCTGAGTATGAGAACATGCTTGTTGGTGAGGGCTTGCTGAATGTGGCGGTGGTCATAAAGGATGAGCTGACCAAAGAGCGAGTCCTAGCATCAGAAGAGTTCAACATCATCGCCCCACAGATCTCTATAGAGGTCGTTGGAGGGGATAACATTCAGCAAAAGAAGGAGCACAGTGCCCTGGTTTCTTTAACTAATGGTTTCGCTATGCCCTTGAGCAGTGCTGTGCTGACAGCGGAAGGCTCAGGTTTGTTGGAGGGCAAAGACCAGACAAAGGTGTGCCTCCCGCAGCCAGGACAGACCATTGAGAGAAAGGTTTCTTTCACCCCCACCACAACCGGCACCAAACTGGTGCAGGCAAGCCTGGCTTACAACAACAGTTCCACAGCCATCAGAAGCTTCCACAAAGTCTCTGTTTTTGCATAAAGCTCACTTTTTGTATTTCTCTGCCTGGTAAATTAATATTAAAATGCTCGTTCTATTTCTtaatttcttgttttgtattgatAGGTATTACTGCACATTTGTAGCTTAAGCTAGAAACAGGAGCATTTTGCTGCACATGCTATAACATCTGCAAAGAAATGTTTACATGACCAATgtatacaccaccgttcaaaggtttggggtcccttagaaatatccttgtttttgaaggaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1581572 lncRNA downstream 151482 49774003 ~ 49775982 (-) True G1384703
TU1581564 lncRNA downstream 158489 49768561 ~ 49768975 (-) True G1384695
TU1581416 lncRNA downstream 369974 49556496 ~ 49557490 (-) True G1384554
TU1581337 lncRNA downstream 516781 49409445 ~ 49410683 (-) True LOC110492195
TU1581250 lncRNA downstream 537190 49384035 ~ 49390274 (-) True G1384400
TU1581791 lncRNA upstream 164252 50098002 ~ 50103021 (-) False G1384896
TU1581792 lncRNA upstream 164252 50098002 ~ 50103021 (-) False G1384896
TU1581793 lncRNA upstream 164252 50098002 ~ 50103021 (-) True G1384896
TU1581833 lncRNA upstream 275558 50209308 ~ 50210181 (-) True G1384934
TU1581831 lncRNA upstream 277751 50211501 ~ 50215831 (-) False G1384933
XM_021566299.2 mRNA downstream 46642 49840098 ~ 49880822 (-) False LOC110492202
XM_021566300.2 mRNA downstream 46642 49840098 ~ 49880822 (-) True LOC110492202
XM_021566297.2 mRNA downstream 94299 49801983 ~ 49833165 (-) True LOC110492201
XM_036947160.1 mRNA downstream 108921 49801983 ~ 49818543 (-) False LOC110492201
XM_021566295.2 mRNA downstream 137511 49785647 ~ 49789953 (-) True LOC110492200
XM_036947161.1 mRNA upstream 16915 49950665 ~ 49971291 (-) False itchb
XM_036947163.1 mRNA upstream 16915 49950665 ~ 49971292 (-) False itchb
XM_036947162.1 mRNA upstream 16915 49950665 ~ 49971293 (-) True itchb
XM_021566309.2 mRNA upstream 381166 50314916 ~ 50318773 (-) True LOC110492208
XM_021566314.2 mRNA upstream 1087706 51021456 ~ 51031919 (-) False mad2l2
TU1581430 other downstream 207925 49603118 ~ 49719539 (-) True LOC110491086
TU1580193 other downstream 731138 49184308 ~ 49196326 (-) True LOC110492187
TU1579549 other downstream 1614506 48282213 ~ 48312958 (-) True G1382894
TU1579359 other downstream 1981242 47943379 ~ 47946222 (-) True G1382721
TU1579060 other downstream 2478599 47425312 ~ 47448865 (-) True LOC110492148
TU1581769 other upstream 131071 50064821 ~ 50065817 (-) True G1384875
TU1582569 other upstream 1121881 51055631 ~ 51056061 (-) True G1385645
TU1582822 other upstream 1156895 51090645 ~ 51128648 (-) True G1385888
TU1582837 other upstream 1179653 51113403 ~ 51115065 (-) True dffb
TU1583828 other upstream 2049384 51983134 ~ 51989995 (-) True LOC110492226

Expression Profile