RNA id: XM_021566302.2


Basic Information

Item Value
RNA id XM_021566302.2
length 4834
RNA type mRNA
GC content 0.42
exon number 7
gene id e2f1
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49933079 ~ 49938888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATTTGGCGGGTAAACCTCAACTCTTGTTCTGATCAGCTGGGATAATAGCACAACATATCATAGTTGATTTGGGGCTCAGATGAGACATTTTGTGCACGGATTATAGTCAAGGTGTTCATTGAAACGATCCATATGATTCGTTGATCGGATATGTAGATTTTTTGGGTGAATATTTGTCATTATTTCAGTTTTGCGGTATTACTTCCTGGGTGTGTTGACCATAACGAGTGGGTGAAGAACTGAGTTTGCTAGTACTGTATCTCGCTAGCATGCTAACTTGCCCAAATTTTGTCATTTTGAAATAACGCATTATATAAATCAGGTTATTTATTCTTCCAAGGTAACTAGACGTTCTGGGTAGTGCAATTTTGTTAGGAAGTGTAATAAGTATTTAGATTGTTGACTTGTTGTAGCTGATGTTTTGCTTGTGAGCTTCGTATGAAACTTGAGTTGTGTTCGAAGTTAACCCTGAAGCGAACACAACCCAATTTCTTGGCTAACAATACTAGCAAGCCAGCTAGTTAACTAACTCGCTCAACTTTTCTAGGTCGTTGGATACAGTATTCAATTAACTCTGTTCGCTAGCAACACAGTAAGCAAATTATTATCATTATGTTTACAATTTGCTCCAAACTAACGTTGATGTAAATCAACGTTAGCTACAGTAAATAACTAGTTAGCTAACGACAATGGACAAAGGGAAGGAGTTGCTATATGTGGCCTCGCCGCAGTCATTGGAAAGATGAAAATACCTAACGTTAGTTAGAAAAACTTCGCAGCAAGTTAGCACGCTAGCTGACCTTGGTGCTGGTTTATTACACTTTTTTCAACTATCAATATAGCATAAGTGTTGCTGTATTGTATGGTTTCAGACGAACTACTGTATATTAGACTGAAGCTGTCAGAAACCTCAACCACTGTCTCAACGTTATTTTATAGCTGGCTAATTTGTAGGAATCACGCCCTATATTTGACCTTTGACCATACATTTTCGAATGAGTCAGCTTTGTTGGAGCTTGATTGTCAGCAAGATACTGTTAATATTAGACATGTTTAACCTCAGTATTTGAAAGCCAACTCTTTCAATACATTTACACTATTATGCGCATACATTAGAGATGACATATGTCAAAAGGTGCTAATACTACCATACCAAGCCATTGGACTTGAATTCTGCCCCAACACGATCTAGGGGACTAGAGCACCCCAGTTGTGTGTGCGATGTCAGAAACGCTCCTATCAGGTCAGACGTCGGAGGATCTATTGGTAGACTTTGAGTCTCTTCTGAATGCTGGGAGTATTGGCCTCTCAGAGGACCACCAAATAGTCATAATCTCCACTCCCAGCAATGTGGGCTTCAACTCTGCAGTCCCCAGCAACACTGGAGAGATCCTTCTGTTCGCCACCCCCCAAGGCCCTGCAGATGTGGTCCAGGACCAGCGACGGCCAACTCTGGGACGACCACCGGTGAAGAGGAAGCTGGACTTGGACAGTGATCACCAATATGTGAGCACCTCTCGCCCCCCTTCTCTTGGGAGAGCCCCAACATCCACACCAGCACCTCCTAGAGttccaAAGCTTTCCACAGAGAAGTCTCGCTATGACACGTCTCTGAACCTGACCACCAAGCGCTTCTTGGACCTGCTAGCCCAGTCTCCTGACGGGGTGGTGGACCTCAACTGGGCCTCGCAGGTCCTGGAAGTGCAGAAGAGGCGCATCTATGACATCACCAATGTCCTGGAGGGTATCCAGCTCATCTCCAAGAAATCAAAGAACAACATACAATGGCTGGGGAACCGTATTGATGAAGCGTCTGTTTCCCGTTACCAGGACCTACAGAAAGAGGTCTCTGACTTCACACAGGCGGAGGAGAAACTGGACGAGCTCATTACCAAGTGTAACCTTCAGCTGAGACTCCTCACTGAGGATACCCAGAACAAGAAGCTGGGTTATGTGATGTGCCAGGATCTGCGGAAGTCTTTTGACTCTCCTGACCAGCTGGTGATGGTAATCAGAGCCCCTCCAGAGACCCAGATGCAAGTCTCAGAGCCCAGTGAGGGCTATCAGGTCTCCCTGAAGAGCACTCAGGGTCCCATCGACGTCTTCCTGTGTCCAGAGGACAGTTCTGGTGTCTGCAGCCCAGTGACAGGCATCAGCCCAACTAAAGCCACAGACCAGACAATGCCCCAGGATGCAGAACAACCACAGTGCAGCACCACACAGGAAATTACATCAACAGCTGCGTCCCAACAGAACTCCTCCCCTCTGCCATTATGTCGTGAAGCGGAAGCATTCCTGGAAGGCGACCCGTTCCCCAACCTGGGAGTGCTGCCGGACTTTGACCTTTCACCCCTGCCATCCTCTGACTTCCTCGGTGCGGAGTGCTTTGGGAACCCACTGGATGGCTTCATCAACCTGTCACCTCCACAGAGCCAAGACTACCACTTTGGTCTAGAGGAGCACGAGGGCATCAGCGAACTGTTTGACTGTGACTTTGGGGACCTGACCCCACTGGAGTTCTGACAATGTGGTGGAAAGGAAAACCCAAAGAACTAGAATGAGGTTCTGTTTCTATGGGAACACCCCATACCATCTCAGAACAAAGAAGCATACCCAAGTGGTTAAAATACAGAATTGTACAGCACAGACTGTACTAGCACTTAAGTTGCTTAGCAAAATAATTTAGTTTTAGTTggctatttaatttatttatatacaAATCATGTTTTTGTAcagcttcttttttttctttttttaagtgGTTTGCAGGTGTATTTGTGGGATATGGATGTGATTATCAGCTGGAATATTAGCATGTAATGCTAATAATGAATTTGTTATATTAGACATTTTAGCCATAGTCTCAGGTGTAAGGAACAGTGACTTTTACAGTAAGAGTTGGAGTTCAGATAAATTTTATAAAGTCGTGCAGTATGTTGGCAAATGGTAATGGgaggatatacactgagtgcacaaaacatttaagagcacatgctctttccatgacataggtgaatccaggttaaagcaaatttaggaaggtgttcctaatgtttggtatgctcTGTTTATATTCCCAAGATTGTTTTATTTCCCCTGGTGGTGTTATTTATTTCTCTGACCTGTGGGTGCCTATTACAAACCCTCCCATAAGCTAATTACaaggcacacacacattaatggTCGGACTGTCTCAGCCTTCAATTTGATTCTCTTGAAATGGCAGCTGAACTAATAGTAATTTTTTAATGTGAggtattttgtttattttgtcaTTATCATGAACCTCATCACAACTCTTTTCTGCAAGACTCATGTAGTGCcttataaaaacaaacaaaaaacaatcagGATGTCTGGTGGGTGGATTGAATTCAGGTGTTATGCTGTGTGTAAAGTTGAGGTGTTTATGAAAGTGTTCGATTTGAATTTCTTAACCGCACGTTATGGATGACTATTTTTGGGGGGCAGTCAGGCTACTGTTCTTGAAAATTCAGCCACTGTGCTAACAACGCAAGGGAAACaaggaaactgagctgcagtcACAATCACAATGTTCTGTGCTTTGTTTTATAACAATGTTACAAGATTAACATTTTTGCCACAAATTCTGTGGTAAAAGTAATTACTTGTAACAATCTAACAAATGGTTTCAAGCATGTGCTTTGCCTCAACttagttttttaaagaaaaacattttgatttgaccctacaaaatgtgttaaaagcaagttctgcagagAATAGGTATGTCAACTAAAATATGACTGAAGTTCAGTGAGGCAAAGCAGAGGTACTGATGAGACTACGTTCCAAGCATTCCTATATGGCTTGTCATAAATGTACATCAGTAACACAAGGCCTTGAGCAATGAGTCAATCATCGGTTGACTGTTAATTTTCTAGTGGAACAATGTCTCTAAGAGTTGATAAAGATGTTTATCTGTATGAGGGGATGTGCAGTACCTGTTAATTTatgttatgctatgctatgctatgttgGCCCCCTGCCATTGTCCCCTCCCAAGATTGTAGCAGGTCACGTCGCATTTGCCTACAGTGGCACATAGTTCTCTCTCATCACAGACCGGTTCTCACTCTAGGATGAGCAGTCTGTCCCTGGAAGTTTCAAACAACGAGGGGAATTAAGACATGCTCACCATGCGATACACACACCAGCAGCAAACAGGTCTGTTTGATCAGTTTCTcacaacaggaaaataatcctgcagcaacaggaaatgtggttTATAATTCATCAACATTTTTATAGAGGATACATTTTTCTTTAGGGCAAATCACATCTGacatttttaagtggaaattacaaaatgTTGAAGCATTTATAaactaactgtccagtgtttccaaaTTTCTATGAAATATTACCTATTACTTACAATAtaagtgaaatagttttcctttcAAGAAATGCTAAATTAGTGTCAAAAAGGATTGGATTGGTGTAGGCGTAccccaacagaatggtgtggatgcaTACCGGTCATTAAAAATGCAAGTCGgctgctgattggccagctcatagTATTTTTTAAACGTTCTCTTCGAGATACAAGTTTGAAGttgttttttttaagtgttttttttctcccatttatgctttggccacaaatacgagtatAGGACGAGTCAACAGCATTATTTAGGTTTGAGTTAACAGACCATTAatttttaaaagtgagattttcactggacagttactttaaaccttgaatacactctGCCTTTGATTTTCCTGCTGTGCATCTATACTACTTGTCTTTCTCATATGTTCAGAAACTTTAGTGTAAAGTAGATAAATAAATGCATATA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K17454 E2F1; transcription factor E2F1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1581572 lncRNA downstream 157097 49774003 ~ 49775982 (-) True G1384703
TU1581564 lncRNA downstream 164104 49768561 ~ 49768975 (-) True G1384695
TU1581416 lncRNA downstream 375589 49556496 ~ 49557490 (-) True G1384554
TU1581337 lncRNA downstream 522396 49409445 ~ 49410683 (-) True LOC110492195
TU1581250 lncRNA downstream 542805 49384035 ~ 49390274 (-) True G1384400
TU1581791 lncRNA upstream 159114 50098002 ~ 50103021 (-) False G1384896
TU1581792 lncRNA upstream 159114 50098002 ~ 50103021 (-) False G1384896
TU1581793 lncRNA upstream 159114 50098002 ~ 50103021 (-) True G1384896
TU1581833 lncRNA upstream 270420 50209308 ~ 50210181 (-) True G1384934
TU1581831 lncRNA upstream 272613 50211501 ~ 50215831 (-) False G1384933
XM_021566299.2 mRNA downstream 52257 49840098 ~ 49880822 (-) False LOC110492202
XM_021566300.2 mRNA downstream 52257 49840098 ~ 49880822 (-) True LOC110492202
XM_021566297.2 mRNA downstream 99914 49801983 ~ 49833165 (-) True LOC110492201
XM_036947160.1 mRNA downstream 114536 49801983 ~ 49818543 (-) False LOC110492201
XM_021566295.2 mRNA downstream 143126 49785647 ~ 49789953 (-) True LOC110492200
XM_036947161.1 mRNA upstream 11777 49950665 ~ 49971291 (-) False itchb
XM_036947163.1 mRNA upstream 11777 49950665 ~ 49971292 (-) False itchb
XM_036947162.1 mRNA upstream 11777 49950665 ~ 49971293 (-) True itchb
XM_021566309.2 mRNA upstream 376028 50314916 ~ 50318773 (-) True LOC110492208
XM_021566314.2 mRNA upstream 1082568 51021456 ~ 51031919 (-) False mad2l2
TU1581430 other downstream 213540 49603118 ~ 49719539 (-) True LOC110491086
TU1580193 other downstream 736753 49184308 ~ 49196326 (-) True LOC110492187
TU1579549 other downstream 1620121 48282213 ~ 48312958 (-) True G1382894
TU1579359 other downstream 1986857 47943379 ~ 47946222 (-) True G1382721
TU1579060 other downstream 2484214 47425312 ~ 47448865 (-) True LOC110492148
TU1581769 other upstream 125933 50064821 ~ 50065817 (-) True G1384875
TU1582569 other upstream 1116743 51055631 ~ 51056061 (-) True G1385645
TU1582822 other upstream 1151757 51090645 ~ 51128648 (-) True G1385888
TU1582837 other upstream 1174515 51113403 ~ 51115065 (-) True dffb
TU1583828 other upstream 2044246 51983134 ~ 51989995 (-) True LOC110492226

Expression Profile