RNA id: XM_036947162.1


Basic Information

Item Value
RNA id XM_036947162.1
length 4176
RNA type mRNA
GC content 0.49
exon number 24
gene id itchb
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49950665 ~ 49971293 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATCAGCATGAATAACGTGAACAACATGTACAACATTACAAATGTTTTCCCAAATGTGAGATAATGAACTTGTTCTCTGTAATATCGTATAGCTTTGAAGTCGTGACATTACGTAGTGTCGAGGAAAATAGGCAGGTTTCTCGACTCATACCTTGACTTTCAGAAGGGATTGCCTGACGATTATCGTAGCAACCGCGTGACGCTACATGACACCGTGAACGCGATTGGTCGACAGTCTTTCCGGGTGGCGCGTTGTACGTTTCTAATCATTTCTCGCTGGTTTTTATGTCCTCCTCGAATAGAGATGGTTTTGGTCACGTGAGACGATTACGAAGATGGTGGAAGTTTCTTTCTTGAAGTGAAGCCGCAAAAGAACCCAAAACAGACAGGGATATTGCGGAAAGTTGCCTGTAACGTCACGTCTTGAACTTCTTCTGCCCTTGGATTCGGCCAGCCCTATGTCATGGCCTCCAGCGTTGCTAAACCAGGCCCTGGGAATGGCTACCCCATGAAGGCACAACTGCAAATTATGGTGCTGTCAGCAAAACTGAAAGAAAACAGGAAGAATTGGTTTGGCCCCAGTCCATATGTTGAAGTGGCCGTTGATGGACAGTCCAAAAAGACAGAGAAATGCAACAACACCCACAGTCCCAAATGGAAGCAGCCGCTCACAGTAATTGTCACTCCTTTTAGCAAGCTAATCTTCCGAGTATGGAGTCACCAGACCTTGAAGTCGGACATATTGTTAGGCATGGCAGCTCTCGAGGTCAGCGAAACACTCAAAGCCAACGACATGAAAATCTCTGAGGTGGTGCAGACTCTGCAGCTGAGTGCAGACAGAGACCAGACCGATGTCGTGggggacctgtctgtctgtctggatggcaTGCAAGTGGACCCAGAGATGTTTGCGTCTGCTGCTCAGGCTAACACCCAAAGTACATCGAATGGGGAATCGCAACAAAACGGGGATGATGTGAAGCGGAGTAGAGACAGCTCTCCTTCTGTGGATGGTTTGGAGCACAGAGCTTCCCCAAATGGTTGTGCGGTCGCAGTGAATGGCACAGGGTCTTGCAAAGGGTCTCCCGCTCTGTCAGCAGGGGGTTCCAGGGGTAATCCTCTACGCCCCCCCAGGCCCTCCCGACCCCCTCCACCCACCCCGCGCAGACCAACCTCCTCTCCAGCAGCATCCTCTAATGGATCCATTCCAACTGAAGAAAGCGATGGCCCCAGCTCAGATACCCCAGTCAGTGCACCTGCAGTACCAGACCCCAACGCCCCACCCCCTACACACGACCAGAGCCAAGCAATAGCAGCAAGCCAAGCAGACAGTGTAACCCCAGGCCCCCCCAGAGCCCCCGCTGTCGCCGCAGGCCCATTGCCTCCTGGATGGGAGCAGAGGGTGGATCAGAACGGAAGGCTATATTTCGTAGATCATGTGGAAAAGAGGACGGCGTGGGAGCGGCCTGAGCCTCTACCTTCTGGGTGGGAGCGGCGAGTGGACCCCATGGGCAGGGTCTACTTTGTAGACCACATCACCAGAACTACCACATGGCAACGGCCCACTATGGAGACGGTGCGGAACTATGAACAGTGGCAGCACCAACGCAACCAGCTACAGGGTGCCATGCAGCAGTTCAACCAGCGCTTCATATTTGGAGTGAATGGGCTCCAGGATCAGGTTCCAGCCACTGAGAATAAGCAGTTTGATCCCCTGGGCCCGCTGCCACATGGATGGGAGAAAAGAACTGACAGCAACGGGAGAGTGTACTTTGTTCAACACACCACACGGACTACACAGTGGGAGGACCCTCGCACTCAGGGgctGCTGAATGAGAAGCCTCTTCCAGAGGGCTGGGAGATGAGGTTTACAGTCGACGGCATCCCATACTTTGTGGACCACAACAGGAGAGCCACTACGTACATCGACCCTCGTACTGGAAAATCTTCACTtgAAAATGGGCCCCAGATAACTTATGTTCGAGACTTTAAAGCCAAAGTCCAGTACTTCAGATTCTGGTGCCAGCAATTGTCAATGCCTCAGCACATCAAGATCACTGTCACCCGCAAAACCCTGTTTGAGGACTCGTTCCAACAAATAATGAGCTTCAATGCACAGGACCTCCGCAGGAGATTATGGATCATATTCCCTGGGGAAGAAGGTCTTGATTATGGAGGGGTGGCAAGGGAGTGGTTCTTCCTGCTGTCTCACGAGGTGCTGAATCCCATGTATTGCCTGTTTGAGTATGCTGGGAAGGACAACTACTGCCTACAGATCAACCCTGCCTCCTACATCAACCCTGATCACCTTAAGTACTTCAAATTCATCGGACGCTTCATCGCCATGGCTCTTTTCCACGGGAAGTTCATTGACACAGGCTTTTCGCTACCGTTCTACAAGCGCATGCTGAACAAGCCATGGGCACTGAAAGATCTAGAGTCCATTGACCCAGAATTCTACAATTCTCTCATCTGGATTAAGGAGAATGACATTGAGGAGTGTGGCCTGGAGATGTACTTCTCTGTGGACAAAGAGATTCTGGGTGAAATCACCACTCATGAGCTCAAGCCGGACGGAGGAGAGGTCCTGGTCACTGAGGAGAACAAGGAGGAGTATATCAGGCTTGTAGCAGAGTGGAGGTTATCCAGAGGTGTGGAGGAGCAGACCCAGGCCTTCTTTGAGGGCTTCAACGAGGTCCTCCCACAGCAGTACCTGCAGTACTTTGATGCCAAAGAACTTGAGGTCATGTTGTGTGGGATGCAGGAGATCGACCTGGCAGACTGGCAGAGGAACACCATCTACAGACACTATGCACGCAGCAGCAAGCAGGTCCTCTGGTTCTGGCAGCTCATCAAAGAGATGGACAATGAGAAGCGGATGAGGCTCCTCCAGTTCGTTACAGGCACCTGCCGGCTTCCTGTCGGAGGCTTTGCAGACCTATTGGGGAGCAATGGCCCGCAGAAGTTCTGCATCGAGAAGGTGGGAAAGGAGAACTGGCTACCCAGAAGTCACACCTGCTTCAATCGATTGGATCTGCCTCCTTACAAAAGCTACGAGCAGCTGAAGGAGAAATTGATGTTTGCGATTGAAGAGACTGAGGGCTTTGGGCAGGAGTGATCCAGCAACGGATCAATAGACAGAGTGTGGTCTTCGTTTGTCAGGGAGCCTCTTGAAGAccagtgtgtttttgtgtgtgcttgccagtgtttcccctatatgcatTTAGCAGTGGCGCACCAACGCTACCTCCtgcatttaaacattttttatgtGGCTGTATGCCCCAAGAAGACCCCATTCACCGCCACCCCTCCAAACTCTGCCACCTCTGCTGAAaaaaatcctaggggaaacactgcgtGCTGTTGAAGGAGAAAACTTGCTCTAAAATACTGGAAGAATATTTGAGGGTATCGATCCACAACAGTAAGCTGCTCCCTTCTCTCAGAATGTCCCCCACATCATGCATGAATGCTGGAAACCCACCATCAATAACATATATGGGACAGGGATATCAGAAGCATCGGTCCCATCCTTTGATTGACCCGCCACTATTTCTGACAATCCCAACACTGACTGAGGAAAATGAAGACCTCTGATCAGGCAATGGCCAGATCCAGAAGTTGCACTGCACATGCTACAAAATAGAACAGTCCTTCTGTTCAATGCTCCTTAGCATTTATCTGTGAATCAATAAAATATTGCAAGGGACAATATTGGCCCCTATATTTATGGTACAAGAATCTACTATGGCCCTAGTTTTATAGGGCATTGTGACatgatcaatttttttttaagtattctgAAATGTTTGTCTAGAATATTGCCTTGAGATGTCTTCAGTGATATGAGATTTAACCACATTGGAGACTAGATATACATGTAGCTTTTAATAGTCTGGGAGATTTTTAGCATATGAATTTATCGATTTTTATAGGAAATGGGAGATGTTTTTCTGGCTGTGGCAAAGGCATGGgaatacatatttttttcccTGGAAGATTATGAATGGAAATCCCAGGGAAGTAAATgtgtaaataatcatttgttgCATTGCAAATAAAAAGCCAGCCCCTTTTATTTTTGTCTCCAGATGTATCGTAACTGCTATCCCTGTATATGAAACCATGTTGTAAATTGTTAATAACAAATGAATTTCCTTTTATAAAAAGGG

Function

GO: NA

KEGG:

id description
K05632 ITCH, AIP4; E3 ubiquitin-protein ligase Itchy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1581572 lncRNA downstream 174683 49774003 ~ 49775982 (-) True G1384703
TU1581564 lncRNA downstream 181690 49768561 ~ 49768975 (-) True G1384695
TU1581416 lncRNA downstream 393175 49556496 ~ 49557490 (-) True G1384554
TU1581337 lncRNA downstream 539982 49409445 ~ 49410683 (-) True LOC110492195
TU1581250 lncRNA downstream 560391 49384035 ~ 49390274 (-) True G1384400
TU1581791 lncRNA upstream 126709 50098002 ~ 50103021 (-) False G1384896
TU1581792 lncRNA upstream 126709 50098002 ~ 50103021 (-) False G1384896
TU1581793 lncRNA upstream 126709 50098002 ~ 50103021 (-) True G1384896
TU1581833 lncRNA upstream 238015 50209308 ~ 50210181 (-) True G1384934
TU1581831 lncRNA upstream 240208 50211501 ~ 50215831 (-) False G1384933
XM_021566302.2 mRNA downstream 11777 49933079 ~ 49938888 (-) True e2f1
LOC110491088 mRNA downstream 16915 49927464 ~ 49933750 (-) True LOC110491088
XM_021566299.2 mRNA downstream 69843 49840098 ~ 49880822 (-) False LOC110492202
XM_021566300.2 mRNA downstream 69843 49840098 ~ 49880822 (-) True LOC110492202
XM_021566297.2 mRNA downstream 117500 49801983 ~ 49833165 (-) True LOC110492201
XM_021566309.2 mRNA upstream 343623 50314916 ~ 50318773 (-) True LOC110492208
XM_021566314.2 mRNA upstream 1050163 51021456 ~ 51031919 (-) False mad2l2
LOC110491089 mRNA upstream 1069830 51041123 ~ 51043794 (-) False LOC110491089
LOC110491090 mRNA upstream 1105485 51076778 ~ 51077359 (-) True LOC110491090
XM_021566315.2 mRNA upstream 1130490 51101783 ~ 51103933 (-) True LOC110492214
TU1581430 other downstream 231126 49603118 ~ 49719539 (-) True LOC110491086
TU1580193 other downstream 754339 49184308 ~ 49196326 (-) True LOC110492187
TU1579549 other downstream 1637707 48282213 ~ 48312958 (-) True G1382894
TU1579359 other downstream 2004443 47943379 ~ 47946222 (-) True G1382721
TU1579060 other downstream 2501800 47425312 ~ 47448865 (-) True LOC110492148
TU1581769 other upstream 93528 50064821 ~ 50065817 (-) True G1384875
TU1582569 other upstream 1084338 51055631 ~ 51056061 (-) True G1385645
TU1582822 other upstream 1119352 51090645 ~ 51128648 (-) True G1385888
TU1582837 other upstream 1142110 51113403 ~ 51115065 (-) True dffb
TU1583828 other upstream 2011841 51983134 ~ 51989995 (-) True LOC110492226

Expression Profile