RNA id: XM_021566309.2


Basic Information

Item Value
RNA id XM_021566309.2
length 1414
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110492208
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 50314916 ~ 50318773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGGTTGGCTGCTGTCTTACATTGATCTAGGATACTAGATGCAACTGCTGTTCTGAATGTAGCGAGCAGATAGTAGTATTAGATTGTTGTGATGCCTAGGTGTAGACAACATATGGATTTCCAATACTGAGAATTGATTATTTTTCCATTCGCTTTCTCTTGCTAGCAGACCTGACAGATCACTTCGGGTACTTCTATATACAGGCTTGCCAGAAAAGAGAGAAACTAAAGGGGGCATAGCACATAAGAGGGCCTTAAGGAGAGTGTAGCTGTAGAAACAGGGTTAGGTAGATAGACTGCCATGAGAGAGGATCCGTCAAGCTGTGGTGAATACCCTGAGGGAGGGGTGGTGTCCAGCGAGGAGGAGCCAGACTGTGCTCCAATCAAATACCCTGTGGTGCTGGTAACACCAGGGGCCGGCGGGCGCAAGAGTGTCTCCAGGAAAGACAACATTTCATCGCCAACAGAGGACAACAAGTCATCGACAGGAGGGCCTCCCAGTCTGATCCCATCAGGACCCAAGAGGCCTAAGAAGAGTCCCCagccctccctgtctcctctccccatcccaggCCAGCCCCTGGAGGACCCTCAGCACCAACGGGTGATCGCCAATGTACGGGAGCGCCAAAGGACGCAGTCCCTGAACGACGCCTTTGCCTCGCTGCGTAAGATCATCCCCACGCTCCCCTCAGACAAGCTGAGCAAGATCCAGATCCTAAAGCTGGCCTCGCGTTACATTGACTTCCTCTACCAGGTCCTGCAGAGCGACGAGATGGATGCCAAGCTAGCCAGCTGTAACTACCTAGCCCACGAGAGACTCAGCTATGCATTCTCGgtgtggaggatggagggggccTGGTCCATGTCCGCTACCCACTAGCCCTGTCACCTACCTCTCTAACaccccctcactcctctcctgccCCAGCCAATCTcccatgacctctgacccctgctcTCTGACCCTCATCCTCACAGCATCTAACTCTTATCATTCTACACCAGCACCGTACCAAGGCGACTGAGAAGCCTCCACCTGTTGGTCTGCAATCCCTTTGTTTACTGGTTTGGAACTACACCTCTGGACCAACTAAATCAAAGATATGAGCCTGCCCTCACTCTGGAGAGGTACTGTAGAGAGACTCAGCTTCCTCGAGCCCACACAGAATCTATGGGACAATGATTCAGAGCTACTAGCAGGTCTAGAAGAGGGACAACTATAGAGTTTTAGGACCTGGAAATTGCAACTTGTGACTTGGAAACAATTTGGTAAACAAATGTAAGTTGCAGTTATTCATGGGAATATTCCTATTGTACATGTAGTACAGAACTGTTTGTAAACCAACATACAATTCCTCATTAAAAGGGAATCAGTTGGTGTAAGATAATAAAATGAGTACTTGAGCATC

Function

GO: NA

KEGG:

id description
K09069 TWIST; twist

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1581927 lncRNA downstream 515 50313736 ~ 50314401 (-) True G1385025
TU1581908 lncRNA downstream 72559 50241871 ~ 50242357 (-) True G1385009
TU1581902 lncRNA downstream 83278 50231434 ~ 50231638 (-) True G1385003
TU1581896 lncRNA downstream 93012 50221675 ~ 50221904 (-) True G1384997
TU1581893 lncRNA downstream 98578 50216109 ~ 50216338 (-) True G1384994
TU1581984 lncRNA upstream 10206 50328979 ~ 50329358 (-) True G1385072
TU1582037 lncRNA upstream 102709 50421482 ~ 50421767 (-) True G1385123
TU1582039 lncRNA upstream 105342 50424115 ~ 50424335 (-) True G1385125
TU1582047 lncRNA upstream 117690 50436463 ~ 50436711 (-) True G1385133
TU1582067 lncRNA upstream 144411 50463184 ~ 50463397 (-) True G1385153
XM_036947162.1 mRNA downstream 343623 49950665 ~ 49971293 (-) True itchb
XM_036947163.1 mRNA downstream 343624 49950665 ~ 49971292 (-) False itchb
XM_036947161.1 mRNA downstream 343625 49950665 ~ 49971291 (-) False itchb
XM_021566302.2 mRNA downstream 376028 49933079 ~ 49938888 (-) True e2f1
LOC110491088 mRNA downstream 381166 49927464 ~ 49933750 (-) True LOC110491088
XM_021566314.2 mRNA upstream 702683 51021456 ~ 51031919 (-) False mad2l2
LOC110491089 mRNA upstream 722350 51041123 ~ 51043794 (-) False LOC110491089
LOC110491090 mRNA upstream 758005 51076778 ~ 51077359 (-) True LOC110491090
XM_021566315.2 mRNA upstream 783010 51101783 ~ 51103933 (-) True LOC110492214
XM_021566317.2 mRNA upstream 794818 51113591 ~ 51117843 (-) False dffb
TU1581769 other downstream 249099 50064821 ~ 50065817 (-) True G1384875
TU1581430 other downstream 595377 49603118 ~ 49719539 (-) True LOC110491086
TU1580193 other downstream 1118590 49184308 ~ 49196326 (-) True LOC110492187
TU1579549 other downstream 2001958 48282213 ~ 48312958 (-) True G1382894
TU1579359 other downstream 2368694 47943379 ~ 47946222 (-) True G1382721
TU1582569 other upstream 736858 51055631 ~ 51056061 (-) True G1385645
TU1582822 other upstream 771872 51090645 ~ 51128648 (-) True G1385888
TU1582837 other upstream 794630 51113403 ~ 51115065 (-) True dffb
TU1583828 other upstream 1664361 51983134 ~ 51989995 (-) True LOC110492226
TU1585179 other upstream 2100103 52418876 ~ 52428759 (-) True spen

Expression Profile