RNA id: XM_036947183.1


Basic Information

Item Value
RNA id XM_036947183.1
length 2296
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110492221
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51721970 ~ 51738292 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACCTAGAGTTAGCTACCTCCTGTTTCCTCATCTTTCCAAGTGTCGACTGGAGGATATTCAGAATGAAAAGATGAGATGGAGACTTCCTCTGAAGGACTATCCCTGGCAGGGCCATGCTGAGTGACATTGGGGACTATATAGGTTCAGACATACAAATTTCCTGGTTGCCTAATCTGGATGAGTTAATGAAGGGCTATGCGCGAAATTTTCGCCCTGGGATAGGAGGCCCACCTGTGAATGTTGCCATGGCTATTGAAGTAGCCAGTATTGACCACATCTCTGAAGCCAACATGGAGTACACCATGACAATTTTCCTGCGTCAGAGCTGGCGGGACGACCGCCTGTCCTACAACCACACCAACAAGACCCTGGGGCTGGATAGCCGCTTCGTGGATAAACTCTGGCTGCCCGACACATTCATTGTCAACGCCAAGTCCGCCTGGTTCCATGACGTCACCGTGGAGAACAAGCTGATTCGCCTGCAGCCTGATGGGGTCATCCTTTACAGCAGCCGGATCACCTCGACTGTGGCGTGTGACATGGACCTGACCAAATACCCCATGGATGAGCAGGAGTGTATGCTGGACCTAGAAAGCTATGGCTACTCCTCAGAGGACATTGTGTACCACTGGTCTGAGAGTCAGATACACATCCATGGACTGGACAAACTGGAGCTGTCCCAGTTCACCATCATCGACTACAAATTTGTCACGGAGACGCTGAACTTCAAATCCGCCGGACGTTTCCCGCGGCTCAGCCTTCGCTTCCAGCTGAGACGTAACCGAGGCGTCTACATCATTCAGTCCTACATGCCCTCCATCCTATTGGTTGCCATGTCCTGGGTGTCCTTCTGGATCAGCCAAACAGCAGTCCCGGCTCGGGTATCCCTGGGGATCACCACTGTGCTCACCATGACGACTCTGATGGTGAGCGCCCGCTCATCTCTCCCTCGAGCCTCGGCCATCAAAGCGCTGGATGTCTACTTCTGGATCTGCTATGTGTTTGTGTTCGCCGCGCTCATAGAGTATGCCTTCGCTCACTACAACGCCGACTACAGGCTCAAAGAGAAGGCCAAGAGCAAGGCCAACAAGATGAGCTCCGAGtCAGTCGTAAAGAATGGGAAACAGGCCATGGTGCTCTTCTCCCTGTCCGTGGCTGGAATGAACCAGGGCCTGATGGTGTCCAGCCGCCGTCCGCAGCGCTCCGGCGCCGAGACCGCAGAGGAGGAGGACGTGGAGCCCAGGAGGGTGCGGGGGACCACAGcgtcagaggagagagaagaggataagaAGTGCTGTAGTTGTTGTTCCAAGTGCTGTTGTGCTTGCAAGCCCCTCCAAGCTGACACCATAGATGTCTACGCCAGGGCTGTGTTCCCCGCCACCTTCGCCATCGTCAATGTGATCTACTGGGTGGCGTACACCATGTGAGTTGGGAGGACTAAGGATGGACAGGCTGGCACCACCAAGGACGGGAGTACTGTACATAGAGGAAAATCATGCCGCTTTGAATCCTGGGACTTATATAGGGGCACCGATGTAAACAAGGCTTCCTTAAGAAGAACTGGATTTACGTATAATATGGTGAAGTAGGGACCTGGTAAATAGCAGATAAAGTACAGTGAATGGACGAACAAAATCAGATCAGGTATATGGATATGTTCTGAAGTACAAGTTATGTACAAGGGAGCCTTGAGGGGTAGTCGATGTCTTATCCTCAGTGAGGCTCACTGTATGATAGCCCAGCTGCTGACTTTTATCTCCAAAAACCTTCACTAGCCACCCAAACTCTACTGCTGCAATCCCCTTAGATACTGATTGCTGCCCACTAAGCCATAGCAATAGACTGACGTTCAGCTATGTCCTTTTACTGTACATGTATGAACTCTGCTCACACCAGCAACATACACAGCACACTAATGTGTCATTGCTGAAAACTAATGTGCACAACAATTGTTGTTCGCTTAACTCACAAACACATCTCATGTGATGGACTAACTgttgaaaacaaaaacatgtcCAGACTTCATGATGATAAGATGCGGTGTAGTCTATTTGGCTGCAGGGCTTATTCTCCCCACCGCCCCTCTTCCCCTCTACCATCCCACTGCCTTCCCCCACTCCTCTTTTTTCTCCTATAATTCCTCCACCCGTTTTTCCTTTCCAGTTTGATTTGGGCTTCAGAGCATCTTATCTCCTCCTGCCAGgtcttcctgtttcctgtttcctgattattattattattattaaaggaCTTCCTCCACTACCTGTGTATTTCCACACTGGAAATGTTCA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05184 GABRD; gamma-aminobutyric acid receptor subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1583689 lncRNA downstream 24504 51697205 ~ 51697466 (-) True G1386681
TU1583682 lncRNA downstream 32229 51689406 ~ 51689741 (-) True G1386674
TU1583677 lncRNA downstream 37185 51684569 ~ 51684785 (-) True G1386669
TU1583676 lncRNA downstream 38047 51683717 ~ 51683923 (-) True G1386668
TU1583675 lncRNA downstream 38404 51683363 ~ 51683566 (-) True G1386667
TU1583735 lncRNA upstream 111523 51849815 ~ 51852787 (-) True G1386716
TU1583732 lncRNA upstream 122037 51860329 ~ 51862186 (-) True G1386713
TU1583801 lncRNA upstream 132399 51870691 ~ 51871007 (-) True G1386781
TU1583802 lncRNA upstream 133598 51871890 ~ 51872097 (-) True G1386782
TU1583804 lncRNA upstream 135669 51873961 ~ 51874371 (-) True G1386784
XM_036945783.1 mRNA downstream 4013 51690883 ~ 51717957 (-) True LOC110491091
XM_021566322.2 mRNA downstream 118000 51522349 ~ 51603970 (-) True LOC110492220
XM_021566316.2 mRNA downstream 604120 51113591 ~ 51117850 (-) False dffb
XM_021566317.2 mRNA downstream 604127 51113591 ~ 51117843 (-) False dffb
XM_021566315.2 mRNA downstream 618037 51101783 ~ 51103933 (-) True LOC110492214
XM_021566355.2 mRNA upstream 242322 51980614 ~ 51990025 (-) False LOC110492226
XM_021566356.2 mRNA upstream 242322 51980614 ~ 51990025 (-) False LOC110492226
XM_021566367.2 mRNA upstream 260266 51998558 ~ 52063138 (-) False LOC110492229
XM_036947198.1 mRNA upstream 260266 51998558 ~ 52069190 (-) False LOC110492229
XM_036947199.1 mRNA upstream 260266 51998558 ~ 52069191 (-) False LOC110492229
TU1582822 other downstream 593322 51090645 ~ 51128648 (-) True G1385888
TU1582837 other downstream 606905 51113403 ~ 51115065 (-) True dffb
TU1582569 other downstream 665909 51055631 ~ 51056061 (-) True G1385645
TU1581769 other downstream 1656153 50064821 ~ 50065817 (-) True G1384875
TU1581430 other downstream 2002431 49603118 ~ 49719539 (-) True LOC110491086
TU1583828 other upstream 244842 51983134 ~ 51989995 (-) True LOC110492226
TU1585179 other upstream 680584 52418876 ~ 52428759 (-) True spen
TU1585247 other upstream 833418 52571710 ~ 52572307 (-) True LOC110492250
TU1585503 other upstream 1293640 53031932 ~ 53032921 (-) True G1388236
TU1585952 other upstream 1992045 53730337 ~ 53732915 (-) True LOC110492299

Expression Profile