RNA id: TU1583816


Basic Information

Item Value
RNA id TU1583816
length 910
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC110492226
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51978399 ~ 51990025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accccccaacgGACCAAACACAAGCTGGTGGCTGAGGGGAAGAAGCTCACCTTCCGATGTGGGAAGAAAATTGCAGCAAAGGCAGGCAAAGTACACTGGTACAAGGACGGAGAGATTCTGGAGTACTCCCACCCTGGCTACATCTCCCTAAAAGACGACCACATCAGTATCGTGGCCAACGCCATCAACGAGGGCACATACACCTGCATCGTGAGGAAAAAGAACAAGGTCCTCACCAACTACTCCTGGAGGGTACGAGTGCGCTTCTGAGGGTGATGCCCCCATCCGCACATAGAAGCACTGGGTATTAGCACAGAGAACACACAACCATAGAAACAGAATTACCAGAAGAGGAAAAGCCCTTagacaactgcattttcacacattgacttgaatgggatgtCCGTTCTAGGAATTATATTTCAAAGCACACCTTCACTCAAACATTGCTTGTTCAAAACGGGGACCTCACTCACTTGGGCACATATTTTAATGTATGTACATTGTCTAAACAATACCCTCAAAACAATCATGTTTTAGGTCTGTTTTTTTGTAATGCATTTTCATATGTGCACAATAAACCCTTTTGTTCTATGGTAAGTAGTATATAGAATCTAGATGTAAAACTACATTGTGTCCAAGTGAGTATTCGATACACTGCTGGCATTGTTTGTTATGTATTATGTGAACAATAGACTGTTCATTGAAGTTAGAGCTCACTGACACTTACAGGGTAGCTAGTAGCCTCAAACTTCTCTAAATATTGTCCAGGAATTTCAAATAAATGTAACTAGCCTGGTTACTTTATGCCATGGGTAATGCATTCTAAAAGCTACTGCATCAATGCATGACACCTACAGTATAAACAAcatgttggttccatgtttcatgagctgaaataaaagatcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1583873 lncRNA downstream 10149 51968579 ~ 51970474 (-) True G1386842
TU1583834 lncRNA downstream 57926 51922431 ~ 51922697 (-) True G1386806
TU1583832 lncRNA downstream 62462 51917949 ~ 51918161 (-) True G1386804
TU1583781 lncRNA downstream 64724 51913152 ~ 51915899 (-) True G1386762
TU1583804 lncRNA downstream 106252 51873961 ~ 51874371 (-) True G1386784
TU1583888 lncRNA upstream 13468 51995091 ~ 51995398 (-) True G1386852
TU1583916 lncRNA upstream 89257 52070880 ~ 52071190 (-) True G1386877
TU1583917 lncRNA upstream 92679 52074302 ~ 52077425 (-) True LOC110492230
TU1583921 lncRNA upstream 98293 52079916 ~ 52080116 (-) True G1386881
TU1583922 lncRNA upstream 98514 52080137 ~ 52080369 (-) True G1386882
XM_036947183.1 mRNA downstream 242331 51721970 ~ 51738292 (-) True LOC110492221
XM_021566323.2 mRNA downstream 245063 51721970 ~ 51735560 (-) False LOC110492221
XM_036945783.1 mRNA downstream 262666 51690883 ~ 51717957 (-) True LOC110491091
XM_021566322.2 mRNA downstream 376653 51522349 ~ 51603970 (-) True LOC110492220
XM_021566316.2 mRNA downstream 862773 51113591 ~ 51117850 (-) False dffb
XM_021566367.2 mRNA upstream 16935 51998558 ~ 52063138 (-) False LOC110492229
XM_036947198.1 mRNA upstream 16935 51998558 ~ 52069190 (-) False LOC110492229
XM_036947199.1 mRNA upstream 16935 51998558 ~ 52069191 (-) False LOC110492229
XM_021566366.2 mRNA upstream 16935 51998558 ~ 52069366 (-) True LOC110492229
XR_002468978.2 mRNA upstream 92117 52073740 ~ 52077554 (-) False LOC110492230
TU1582822 other downstream 851975 51090645 ~ 51128648 (-) True G1385888
TU1582837 other downstream 865558 51113403 ~ 51115065 (-) True dffb
TU1582569 other downstream 924562 51055631 ~ 51056061 (-) True G1385645
TU1581769 other downstream 1914806 50064821 ~ 50065817 (-) True G1384875
TU1581430 other downstream 2261084 49603118 ~ 49719539 (-) True LOC110491086
TU1583828 other upstream 1511 51983134 ~ 51989995 (-) True LOC110492226
TU1585179 other upstream 437253 52418876 ~ 52428759 (-) True spen
TU1585247 other upstream 590087 52571710 ~ 52572307 (-) True LOC110492250
TU1585503 other upstream 1050309 53031932 ~ 53032921 (-) True G1388236
TU1585952 other upstream 1748714 53730337 ~ 53732915 (-) True LOC110492299

Expression Profile