RNA id: XR_002468978.2


Basic Information

Item Value
RNA id XR_002468978.2
length 2210
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110492230
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 52073740 ~ 52077554 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAACACTACAATGACCTTTGTCGCTAGGAAATCTCCCGCCCTCACAGGAGGATCCTGAGCCGGGGttgggacctgattagaatgagGGTTTTACAGAAAAGCAGATTGATTTTGTTTGGTTAATTTATTTTTTGGGGTAGTTAGTatgatattttatttttacccaaaCGTTACATTTTTGGGTTATCATTATCCACCCGCATTGTAGGTGGCAGAATGCACATTTAATTGTTACGAACGCCATTATACCATAGAAGAAGATCACCACACAGTAATCTCAATTTCgctaaacaaaatatatattttttttaaatgtttgtttgtCATCATGTCCGTGTGGTGTTATGTGGCTGGCTGTGCTAATTAGATTCTGCAAGTAGTTACGGTTATCAATAATGATGGGACCATTATCAGATGGATTTTCAGGCTGAACTGATGGGTGATGTATTTCGACGACAGCTGAGAAGTGATGCGATACCATCGATATACTTTCCTTCACAACAAAATTGAAGATTCTCAATTAGAAGTAACCTAACGTCAGCTAGCCTAGTTGGACTAGCTggGTGGTATAGAATCTTACACCATGATGCGCATCCAACCCCCAGCTCAGCACAAGGTGAAGGAGTTGTGCAGTACCAGGAAATATTCTTCAAGAGGACCAAACAGTTGGTGGTTAAGAAGCCCTACACCACTTTCGGCAGAGCCTTATCCAGCTGGCCATTCACCGCAGACAGGACAAGCCCATCGCCATAGCACAAAGAGTCTCCGCTTCCCCAGTGCACCATGCCAAACACATTTGCCAGTGTACCGAAGCCAGATAAAGGActatggctgcatttacacaggcagcccaattctgatattttttcactAATGGGTCTTTTgatcaatcagatcagctctgaaaaagatctgttGTGAAAAAATAGCAGAATTGGGCTGTATGTGTAAACGCAGACAGTGTGATTCAGCATAAGATCATGTAGAACACACTgaaggatggctcataataatggccaggacggagcaaatggaatggtatcaaacacattgaAACTGATGTATTTGATATCGTTCCACTCTAGCCATCACCACGAGCCCGTCATCCTCAATTAAAGtgtctccaaccctgtttctggagaactaccctcctgtaggtttatgCTCCTACCATAGTTGTAACTAACCTAGTTCCTTTTTTTAAACCAGCCAGCTAATTATTAGACTCAGGTGTGCTAGGTTACTACAGtgctacaggatggtagctctccaagaacagggttggagagccctgattaGAACCACCATCAAATAAATAAGATATTTTCTATTAGTCTTTTAAATTTGTCTGCCCTTATGAATTCACAGAAGACATTTATATTAAAACTGTACAGGGCTCTGTAGCATCAAACAGATGCTAGACATTCAGATATCCTCTGTAGACTCTACAGATGGGACTTATTCACCATAGTAACCTCCTTAACCAAGCCTCAGAGTGTCAGGGACTGACTGGGCCAACCCAACAGCAGGTCCCTCACAATGAGGGGCGGGCTTCAGCTTGGCACACAATTCCAAAACCACATGAGTGGACTTGGGTTATATGGAGATTAGCATAAGTGCTATGTACTGGTTGTGCATCCCACCTAAACGTATCTGTAATTACTGTATTTGGCTGTAGTTCTGCTCTTGTTGTTAGTGTATTTTTTAAATACTATGCATTTTTGGTGTCCTGTTGTGCATATAAAATATGCTATAAAGCAATGATACCAAAGCTGCGCAAATATTTGGAACTCATTGTACAAGATGAGAtgttatattttacataatttatttaaaaatatatatacgcaTAATATGTGCAGTAGAGTGGGAAAGCATGGATGAGAATAAAGACTCAGTTGTGGTACCCCTTTGGGTGGGTCATAGTGCAAAAACATTTTAGGGACTATGGCCACAAGCAACACATACTCCCTCTGTTGGACTCCTATGATAAAGCACTTGCATCACTCAGTTACTGTTGCTGAAAAAACATTGTTTGAACATCATTGCATTGTTCGTAATAACGTTGAAAACGACTAATTCTCTCTCAGTTGTAACTGAGTacctgtatattaactatagacAGACCAAATCAACAAAGTGGTAATGAATAGTATAGTGATCTGGATGCACCTTTTTTAAGTAAACAGATTTGGTGTAACATGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1583916 lncRNA downstream 2550 52070880 ~ 52071190 (-) True G1386877
TU1583888 lncRNA downstream 78342 51995091 ~ 51995398 (-) True G1386852
TU1583818 lncRNA downstream 92117 51978399 ~ 51981623 (-) False LOC110492226
TU1583816 lncRNA downstream 92117 51980623 ~ 51981623 (-) False LOC110492226
TU1583873 lncRNA downstream 103266 51968579 ~ 51970474 (-) True G1386842
TU1583921 lncRNA upstream 2362 52079916 ~ 52080116 (-) True G1386881
TU1583922 lncRNA upstream 2583 52080137 ~ 52080369 (-) True G1386882
TU1583927 lncRNA upstream 7555 52085109 ~ 52085315 (-) True G1386887
TU1583928 lncRNA upstream 8267 52085821 ~ 52086036 (-) True G1386888
TU1583929 lncRNA upstream 11697 52089251 ~ 52089832 (-) True G1386889
XM_021566366.2 mRNA downstream 4374 51998558 ~ 52069366 (-) True LOC110492229
XM_036947199.1 mRNA downstream 4549 51998558 ~ 52069191 (-) False LOC110492229
XM_036947198.1 mRNA downstream 4550 51998558 ~ 52069190 (-) False LOC110492229
XM_021566367.2 mRNA downstream 10602 51998558 ~ 52063138 (-) False LOC110492229
XM_021566355.2 mRNA downstream 83715 51980614 ~ 51990025 (-) False LOC110492226
XM_021566371.2 mRNA upstream 91261 52168815 ~ 52206285 (-) True LOC110492234
XM_021566372.2 mRNA upstream 164044 52241598 ~ 52267535 (-) False plekhm2
XM_021566373.2 mRNA upstream 164044 52241598 ~ 52267535 (-) False plekhm2
XM_021566374.2 mRNA upstream 164044 52241598 ~ 52267535 (-) True plekhm2
XM_021566378.2 mRNA upstream 190181 52267735 ~ 52273001 (-) True ddost
TU1583828 other downstream 83745 51983134 ~ 51989995 (-) True LOC110492226
TU1582822 other downstream 945092 51090645 ~ 51128648 (-) True G1385888
TU1582837 other downstream 958675 51113403 ~ 51115065 (-) True dffb
TU1582569 other downstream 1017679 51055631 ~ 51056061 (-) True G1385645
TU1581769 other downstream 2007923 50064821 ~ 50065817 (-) True G1384875
TU1585179 other upstream 341322 52418876 ~ 52428759 (-) True spen
TU1585247 other upstream 494156 52571710 ~ 52572307 (-) True LOC110492250
TU1585503 other upstream 954378 53031932 ~ 53032921 (-) True G1388236
TU1585952 other upstream 1652783 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 2467174 54544728 ~ 54545243 (-) True G1389763

Expression Profile