RNA id: TU1583917


Basic Information

Item Value
RNA id TU1583917
length 1519
lncRNA type sense_over
GC content 0.42
exon number 3
gene id LOC110492230
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 52073740 ~ 52077554 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTTGGGGTAGTTAGTatgatattttatttttacccaaaCGTTACATTTTTGGGTTATCATTATCCACCCGCATTGTAGGTGGCAGAATGCACATTTAATTGTTACGAACGCCATTATACCATAGAAGAAGATCACCACACAGTAATCTCAATTTCgctaaacaaaatatatattttttttaaatgtttgtttgtCATCATGTCCGTGTGGTGTTATGTGGCTGGCTGTGCTAATTAGATTCTGCAAGTAGTTACGGTTATCAATAATGATGGGACCATTATCAGATGGATTTTCAGGCTGAACTGATGGGTGATGTATTTCGACGACAGCTGAGAAGTGATGCGATACCATCGATATACTTTCCTTCACAACAAAATTGAAGATTCTCAATTAGAAGTAACCTAACGTCAGCTAGCCTAGTTGGACTAGCTggGTGGTATAGAATCTTACACCATGATGCGCATCCAACCCCCAGCTCAGCACAAGGTGAAGGAGTTGTGCAGTACCAGGAAATATTCTTCAAGAGGACCAAACAGTTGGTGGTTAAGAAGCCCTACACCACTTTCGGCAGAGCCTTATCCAGCTGGCCATTCACCGCAGACAGGACAAGCCCATCGCCATAGCACAAAGAGTCTCCGCTTCCCCAGTGCACCATGCCAAACACATTTGCCAGTGTACCGAAGCCAGATAAAGGActatggctgcatttacacaggcagcccaattctgatattttttcactAATGGGTCTTTTgatcaatcagatcagctctgaaaaagatctgttGTGAAAAAATAGCAGAATTGGGCTGTATGTGTAAACGCAGACAGTGTGATTCAGCATAAGATCATGTAGAACACACTgaaggatggctcataataatggccaggacggagcaaatggaatggtatcaaacacattgaAACTGATGTATTTGATATCGTTCCACTCTAGCCATCACCACGAGCCCGTCATCCTCAATTAAAGtgtctccaaccctgtttctggagaactaccctcctgtaggtttatgCTCCTACCATAGTTGTAACTAACCTAGTTCCTTTTTTTAAACCAGCCAGCTAATTATTAGACTCAGGTGTGCTAGGTTACTACAGtgctacaggatggtagctctccaagaacagggttggagagccctgattaGAACCACCATCAAATAAATAAGATATTTTCTATTAGTCTTTTAAATTTGTCTGCCCTTATGAATTCACAGAAGACATTTATATTAAAACTGTACAGGGCTCTGTAGCATCAAACAGATGCTAGACATTCAGATATCCTCTGTAGACTCTACAGATGGGACTTATTCACCATAGTAACCTCCTTAACCAAGCCTCAGAGTGTCAGGGACTGACTGGGCCAACCCAACAGCAGGTCCCTCACAATGAGGGGCGGGCTTCAGCTTGGCACACAATTCCAAAACCACATGAGTGGACTTGGGTTATATGGAGATTAGCATAAGTGCTATGTACTGGTTGTGCATCCCACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1583916 lncRNA downstream 3112 52070880 ~ 52071190 (-) True G1386877
TU1583888 lncRNA downstream 78904 51995091 ~ 51995398 (-) True G1386852
TU1583818 lncRNA downstream 92679 51978399 ~ 51981623 (-) False LOC110492226
TU1583816 lncRNA downstream 92679 51980623 ~ 51981623 (-) False LOC110492226
TU1583873 lncRNA downstream 103828 51968579 ~ 51970474 (-) True G1386842
TU1583921 lncRNA upstream 2491 52079916 ~ 52080116 (-) True G1386881
TU1583922 lncRNA upstream 2712 52080137 ~ 52080369 (-) True G1386882
TU1583927 lncRNA upstream 7684 52085109 ~ 52085315 (-) True G1386887
TU1583928 lncRNA upstream 8396 52085821 ~ 52086036 (-) True G1386888
TU1583929 lncRNA upstream 11826 52089251 ~ 52089832 (-) True G1386889
XM_021566366.2 mRNA downstream 4936 51998558 ~ 52069366 (-) True LOC110492229
XM_036947199.1 mRNA downstream 5111 51998558 ~ 52069191 (-) False LOC110492229
XM_036947198.1 mRNA downstream 5112 51998558 ~ 52069190 (-) False LOC110492229
XM_021566367.2 mRNA downstream 11164 51998558 ~ 52063138 (-) False LOC110492229
XM_021566356.2 mRNA downstream 84277 51980614 ~ 51990025 (-) False LOC110492226
XM_021566371.2 mRNA upstream 91390 52168815 ~ 52206285 (-) True LOC110492234
XM_021566372.2 mRNA upstream 164173 52241598 ~ 52267535 (-) False plekhm2
XM_021566373.2 mRNA upstream 164173 52241598 ~ 52267535 (-) False plekhm2
XM_021566374.2 mRNA upstream 164173 52241598 ~ 52267535 (-) True plekhm2
XM_021566378.2 mRNA upstream 190310 52267735 ~ 52273001 (-) True ddost
TU1583828 other downstream 84307 51983134 ~ 51989995 (-) True LOC110492226
TU1582822 other downstream 945654 51090645 ~ 51128648 (-) True G1385888
TU1582837 other downstream 959237 51113403 ~ 51115065 (-) True dffb
TU1582569 other downstream 1018241 51055631 ~ 51056061 (-) True G1385645
TU1581769 other downstream 2008485 50064821 ~ 50065817 (-) True G1384875
TU1585179 other upstream 341451 52418876 ~ 52428759 (-) True spen
TU1585247 other upstream 494285 52571710 ~ 52572307 (-) True LOC110492250
TU1585503 other upstream 954507 53031932 ~ 53032921 (-) True G1388236
TU1585952 other upstream 1652912 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 2467303 54544728 ~ 54545243 (-) True G1389763

Expression Profile