RNA id: XM_021566371.2


Basic Information

Item Value
RNA id XM_021566371.2
length 4601
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110492234
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 52168815 ~ 52206285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acgtaacagattacatgtaatccaaTACTCCCCAAACCTGCTTGTCATGTAACCACAAACAAGTTGCCAATGTTAGATGGAAtacacaatattgtgtagagttTTAATGATAGCAGATTAACTGGCAACTGAGTTTTTTTGATAGATTTCTGGTTTGTTGATAGTGACATGATGAAAGAACAACTTTTGAATTTTTTATTGATAAAATCTGGAAAACTGTTCAAATGAGGACAATTAGACTTTCTCTCACCACTGCTTAGTAGAGGGTTGACCGAGGTAACCATTTTTTATGTTTAATTAGGGAGTTATAATGCTTGGGAGAGGGAGAAGCCAAGTAGTTCAAGCATGCGTTTGCAAATACTTTCTTTCTCCAAACTGATACTTAGCTACTTACTTAATTGCATGggcgcacacgcatacacacacacacagacactgcctgagtacacacacagacagacacacgcctGAGCGCACACACTGTCTGCTTCCCACCCCTTTTCCCTCCTACTTGCCTTCTATCCACTTTCAGTGCATTTCTGTTGACACACAACGATCTGacccatgcgcacacacacacacacagacaaactatCACACATATTCACAGAAAGGAAAACATTTTCTCTCACACAGATGGCTGCTAGCACACTCCTCTCTCGATCTCTTTCTATAAGCAGGTGTTGAAATGCAACACTAACTATTAGAGgccgagagaaaaagagggggagagggaggagagagaacgggagagagtgCACTTCCCCAACTgtagcagggagagaggggacgagagggATTGTCAacgaggagagggagagcagaagcCTAAAGAGGGATCTGCATGGTAAGTAACCAGACCAGCGAGCACTTTTTTTCGTTTAAAGTTCCTGTTTTTTGTTGGAGGGAGAAGAAAATAAAGACACAACGGAGGAGTCGGGACCCTGTCCCCTACTTTCTGGACGAGTGGAGTAAAAATCTGAAGAAGACCTGAAGGGAATGAAGCTGGGAGGGACACAAGGCAGTCATGGATAGCACATAGAGCCTCAGCCAGACGATAGGATGGCCTGGATTCACACACTGTCGCTGGCAACCATCCAGCTCAGAAGCTACTGATATCCATGAGTCATGCTTCCCGGGTATGGATTCTCCCCTCTCCCTGACTTCCAGCCTCACCTCCATGTCTTCCGTTGCCGAGGAGAGTGTCCCAGCATGTGGTTCCCGGTCTCAGGCGAGTCTCAGGCTTTGAGCGAGGCCCGGGACGACAGGCCTCTCCTGCGGCAGTGCCAGCACAACCACATCGCCGTGTGTCAGCAGGAGCGGCAGCCGCCTGTGACCCCCAGCGACAACGGCCATGGATCACCTACTGCAGACGCTCAGCACTCCACCCCTTTGCCTCTGAATCATCGCAAACACACAAGGACTGAAGCAGAAAATGGCGGCTGGAGGAGTAACCCTGATCAAGACACTGATACGGACCTGAGTTCAGACTCTCAGATGCCAGGGGGTGACATTGAGCTTTTTATCCGGGAAGATAGGGGGACTGACCCTCCAGGGCAAGAGAAGTGTGAGAGACCCACGGTGGTGTCGACGGTGTTTCGTCCCCTCCACACAGCCCTCAGCCTGcccctgttcctccctctgtcctccctgtaCAGGGACACAGACTACTGTAACTCTCAGTCACCTGGCTCTCTATCCTCACATGAGCCTCCGGAGATGCAGACCCCAGACACCTGTCGACCCCAGAGGAGGACGTCACAGGGTTCACTCAAGGAAAAGTCTATCCGGCGTAAGATGCGAGTGTACTCACCAGACAGCCTGAGTGACGATTCTTTGGCCAGCCCCATTCTGGATGGCGACTACCTCTTCTCAGGACCCTTCGATTCCTTCCTGGAGGAGGACATCGGGGGAGACCCTGTAGATGCCACGAGCCCCTCATCAACAGGGGGGACACCCAACCCTCGAAAGACTCCACCTTTTTCCGCAGAGCCGCTGCAGTTGTCAGAGCACTCATCTGTCTTGAACTGTGGGGCTGTAGAGAATTCCTCGGCCACCGGAGGAAGCTCTTTAGCCCGCTCCAGTATGGCGGAACACGAGCGGCGTCGCTTCTCAGCCTCAGAGCTGATCTCACGGCTACAGCTTTCCCAGAGGAAGAACTCGTTCACACTAAAGCTTGGCAAGTCACTGTCAGCTCGCGTGGCCTCCCGCGACAGGCAGAACCCCAGCAACTTCAGCCCTGACTATAAGTCCACTTCCAGGCATCGTTGCTCAGGTGGTGCCAGTGACAGCGCCCCCCATAGTCCAGTAGGACCTACACCGCAACTGCCATCTGCTGACAAAAACACGCAACAACATCGACGTAGCACCGGATTCACAATCAAAAATTTGAGGAAGAAATCCATTGAGGATGATTGGTGCACTCCTCCCACAGTCAGCAGATCCAATCGTCTGTCACGGTTTCTCCCCAGCTcaATTCTGTACCAGGAGTACAGTGATGTTGCAATCAACCGAGAAATCCTGAGGCAGCAGGGGGAGGAGCCAGGTGCTGAGGAGGAGGGGCTAAGGGAGGAAGGGGCTGGGGAGACTCCATCTCCGTCTAATCTGTCTCCATCCAGCTCCTTTTGCTCATCACGAGGCTCCGCCTTCTCGCTGTGGCAAGACATCCCTGATGTCCGGACCAGCGGTCAGCTGGACAACTTCAGCAATGTTGAGCGCAAACTACAGGAGGCCAAGTTTGAGCTGGTGACATCAGAGGCGTCGTACATTCGGAGTCTGACCATCGCAGTGGACCATTTTATGCTGTCCCAGGAGCTGGGGGAGTGTCTGGGGGCCCAGGACAGACAGTGGCTCTTCTCCAAGCTCCCCGAGGTCAAGGACGTCAGTGAGAGgttccTGCAGGACCTGGAGCACAGACTGGAGGAGGACATCTTGCGTTTTGACGTGTCTGACATCGTCCTGGCCCACTGTCCCGCCCTGCGAAGGGTCTACCTCCCCTACGTGACCAACCAGGCCTACCAGGAACAGACCTACCAGCGCATGTTACAGGAGAATGCTCGCTTCCCAGGTATCCTGGCTCGTTTGGAAGAAGACCCCATCTGCCAGCGTCTTCCCCTCGCCTCCTTCCTCATCCTCCCCTTCCAGAGGATCACACGGCTCAAGATGCTGGTGGAGAATATCCTAAAGAGGACAACACCAGGCTCTAGGGATGAGGACACAGCCACCAAGGCCTTCAATGAGCTGAAAAAGATTATAAAGGAATGTAACTCCAGTGTGCAGTCAATGAAGAGGATGGAAGAGCTCATTCACCTCAATAAGAAGATCCACTTTGAGGGCAAGATATTCCCTCTGATCTCCCAGTCTCGCTGGCTGGTCAAGCATGGAGAACTGCTCGAAGTGGACACACAGACCATGAGTATTTCTGGGTCAAAGTTCAAGTTGCCCACAAGGCCTGTGTACTTGCATCTGTTCAATGACTGTCTTCTGCTGTCCAAGAAGAAGGACACGTGGAAGTTCATGGTGTTTGTTCACGCTAAGATCGGGCAGCTGAAGGTGAAGGACCTCAGTCAGAAGCTTCAGGGCATCTCAGGTTTCATCTTCCACCTGCAGCTGTGTGAGGGCCGGCAACTCAAACACCAGATCCTACTCAAGGCCCACACTGAGAGTGGGAAACAAAGATGGATCACAGCCATGTTTCCCTCTGATCCATTGGAAGATATTGAGCAGGCCACTGAGAATGATGATCTTTCCCAAGTTCAATGCATCAAGAGTTACCAGGCCCAAGAGCATGATGAGCTTACATTGGAGAAGGCTGATATTCTTCAAGCCAAGACCATTACAAGTGACGGCTGGGTGGAGGGCATTCGGCTGTCAGACGGGGAGCGGGGCTGGTTCCCCAAAACCAACGTGGAGGAGATCACAAGTCGCAGTGCGCGTCTCCGCAACCTCAGAGAAAACATCCGCGTTAAGTGTGTCACACAGAAACTGGAAGAGGAGCTCTTTTAAGTGTCCTTTCCATCCTGCAGGTTTTCATTTACACTTGGGATGTCCAATCAAACAGGGCAGCAACCCTCAACCCGTATCCATTAGACCCAGCTTTTATGCAACACCAGTTATACAATAGCTGAGCAGTTTTAGATTATCTGGATGTGGGAGTTTTATTTAGTCTGCAGGTGCTCATAAGGACATCATTTTTGGCATAGCTCGAGCATAAGCAATATTCTTAAGAAATATGGTTATCCAGCTGCATAGCAGTAATTTTCTATCACTCATGCTTGCAATGACTGCATATACAGTACAACTACTGTAACACATCAGAAACCAAGCATTTGTCTTTGCCCCCAAGCACTGTAATAGGAATAAACATAATTTCAGACATCACTTTCAACAGAACATTAAGAACTACAGTGTTTGTGCATCTTCCCTGTCTTTTGACTTTCACTGCTAGTTACACCCTATTGACAATAAGAGTTGTTTACGCGTAGACAAAAATTAAGACAGTAGCACATTATATTATTGTCCAACCACTACTACCATCTACATGCAGATGTTCACCATTCCAGTGACAcattaaatatttttaaaatatagtttaaaaaaaa

Function

GO: NA

KEGG:

id description
K20691 ARHGEF19, WGEF; Rho guanine nucleotide exchange factor 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1583929 lncRNA downstream 78983 52089251 ~ 52089832 (-) True G1386889
TU1583928 lncRNA downstream 82779 52085821 ~ 52086036 (-) True G1386888
TU1583927 lncRNA downstream 83500 52085109 ~ 52085315 (-) True G1386887
TU1583922 lncRNA downstream 88446 52080137 ~ 52080369 (-) True G1386882
TU1583921 lncRNA downstream 88699 52079916 ~ 52080116 (-) True G1386881
TU1585267 lncRNA upstream 387283 52593568 ~ 52593778 (-) True G1388023
TU1585269 lncRNA upstream 391875 52598160 ~ 52598398 (-) True G1388025
TU1585280 lncRNA upstream 405516 52611801 ~ 52612137 (-) True G1388036
TU1585283 lncRNA upstream 411390 52617675 ~ 52618106 (-) True LOC110491093
TU1585288 lncRNA upstream 434390 52640675 ~ 52640919 (-) True G1388044
XR_002468978.2 mRNA downstream 91261 52073740 ~ 52077554 (-) False LOC110492230
XM_021566366.2 mRNA downstream 99449 51998558 ~ 52069366 (-) True LOC110492229
XM_036947199.1 mRNA downstream 99624 51998558 ~ 52069191 (-) False LOC110492229
XM_036947198.1 mRNA downstream 99625 51998558 ~ 52069190 (-) False LOC110492229
XM_021566367.2 mRNA downstream 105677 51998558 ~ 52063138 (-) False LOC110492229
XM_021566372.2 mRNA upstream 35313 52241598 ~ 52267535 (-) False plekhm2
XM_021566373.2 mRNA upstream 35313 52241598 ~ 52267535 (-) False plekhm2
XM_021566374.2 mRNA upstream 35313 52241598 ~ 52267535 (-) True plekhm2
XM_021566378.2 mRNA upstream 61450 52267735 ~ 52273001 (-) True ddost
XM_021566379.2 mRNA upstream 67035 52273320 ~ 52281951 (-) True zbtb17
TU1583828 other downstream 178820 51983134 ~ 51989995 (-) True LOC110492226
TU1582822 other downstream 1040167 51090645 ~ 51128648 (-) True G1385888
TU1582837 other downstream 1053750 51113403 ~ 51115065 (-) True dffb
TU1582569 other downstream 1112754 51055631 ~ 51056061 (-) True G1385645
TU1581769 other downstream 2102998 50064821 ~ 50065817 (-) True G1384875
TU1585179 other upstream 212591 52418876 ~ 52428759 (-) True spen
TU1585247 other upstream 365425 52571710 ~ 52572307 (-) True LOC110492250
TU1585503 other upstream 825647 53031932 ~ 53032921 (-) True G1388236
TU1585952 other upstream 1524052 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 2338443 54544728 ~ 54545243 (-) True G1389763

Expression Profile