RNA id: XM_021566383.2


Basic Information

Item Value
RNA id XM_021566383.2
length 6148
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC110492242
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 52332426 ~ 52364482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACAGGCGGAGTTGGTGACGTCCTCATTTGTGAATGAGGCTTTCGCGAGCTCACGGTTCAGTGTAGCAACTGATGAGAGCGTGGAAGGGTCCCAACCAAGCTTAGAAATAAGAAGAAAACAAACTCAAATGGATTCCCGTGGAATTAAGCGCTTGTTGTTTTCCTATGTATTAATTAACGGTATATTTATTACACTGCAAACTAAAGAAGAGGTGCTGTTGGATATGAGGGCATCAGGGAGTGAGCTAGGCTGGCTGACCTGGCCCTATGAACAAGGATCCAAGCAAGGGtgggaGGTGGTCCAGAGGAGTCTGAATGGCTCCCAGTTGTACACCTACTCTGTGTGTAATGTGGGTGAGCATGAGCAAGACAACTGGCTGCGCACCACCTTCATccagcgccgcccgtcagccTCTCGCATCTTCGTGGAACTGCAGTTCATTGTGCGTGACTGCAACTCATTCGACGGCTCGTCGCTCACCTGCAAGGAGACCTTCAACCTGTTCTCCTCTGAGTCGGACGCCGACATCGGCACCAGCTTCCGCAAGGGCCAGTTCAAGAAGGTGGCCACCATCGCGCCGGACGAGATCACCAGCCGCAACGAGCTGCGCATCAACACAGAGACACGGGTGGTGGAGAGCCTCAGCAGGAAAGGCTTCTACCTGGCCTTCCAGGATATTGGGGCCTGCATGGCGCTGCTCTCTGTCAGGGTCTACTACAAGACCTGCCCCGCCACCATCAAGAGCCTCGCAGCCTTCCCTGAGACAGTGGCGGGTGGGGGGGTGAACCAGGCCCTGAGGGAAGTAGCGGGGGCCTGCGTGGAGAACGCGGTGAGTGAGGAGTCGCCCCGCATCTACTGCACGATGGACGGAGAGTGGGTGGTGCCTGTTGGACAGTGCCAATGCATGCCCGGCTACGAGGCCGTCAACGACACATGTCGAGATTGTCAGCCAGGCTTCTTCAAAGCGTTTGTCTCCAACGACGCATGTGAGCTTTGTCCTGTTAACACCAAGCTGCTGAGCTCCGGGGCACTGTTCTGTCCATGTGCAGAAGACTTCTATCGTGCTCCCGATGACCCAACTACAGGGCCCTGCTCAGGCCTGCCCTCAGCACCGCGAGAACTGGTCGCCACGACCACCCAGCTGGCGGCAGGCAAGCTGCAGCTGTCATGGAGTCCGCCGGAGGACACGGGCGGCCGCAGTGACATCAGCTACAGCGTGGAGTGCCGGCGCTGCGAGGGCACCGCGTGCCAGCCATGCGGGGAGAAGGTGCGCCTTGAGCCGGCCAGCTCAGGCCTGATGGACACCAGGGTGGCAGTGAGCGAACTGGAGCCCCACCTCAACTACACGTTCACCGTTGAGGCCCACAGCGGAGTATCGCTGTTCGCCAGCCAGGGGACGCCACGCTCCAACAGGCCCCCATCCACCAGCACATTGACAACTGCCCTGCACTACACAGaCCCCCCCAAGGTGACGTCCATGCGTCTGGATGAGCGGAGCCTCACCAGCCTTTCCCTGTCCTGGGCTGTAGCCCCCCGCAGGCCCGTGCCCCAGCCCACCCGCTACAAACTCACTTACCGCAAGAAGGATGACAATCTGGATGTGACCACGTACACTGTTCTGATTCTAGAGAAGAGCTCTGTGCAGATCAGTGACTTGTCCCCAGGCACAGCCTACCTATTCAGGGTACAGGCCCTGAGCCCCGAGGGCAACCCTGGAGGATCCAGCATAGAGGATGAATTTGAGACCCTGACTGAAGTGCCACTGTCCCAGAGCAACACAGGGGTCATATTCGGAGCAGCAGTTGGCGGAGCGGCCATGTTGATGATTGTGGTGGTCGTCCTGCTCATACGCAAACGGAGAAGGCGATCTCATACAAGACAAGGACCAGAGGATACTTACTTCTCTAGCTCAGAGCAACTGAAGCCGCTGAAGACCTATGTGGATCCGCACACGTACGAGGACCCCAACATGGCCATCCTCAAGTTTGCCAGCGAGATCCATCCCAGCCATGTGACCAAGCAGAAAGTCATTGGAGCAGGGGAGTTTGGAGAGGTGTACCGTGGTATTCTGAAAGCGCCAGGGCGGAAGGAGGGGGCGGTGGCCATTAAGACGCTGAAGCCGGGCTACTCAGAGAAGCAGAGGCAGGACTTCCTGTCAGAAGCGAGCATCATGGGACAGTTTTCCCACCAGAACATCATTCGCCTGGAGGGAGTCGTCACCAAATTCAAGCATGCCATGATTGTGACTGAGTATATGGAGAACGGCGCACTGGACAAGTACCTAAAGGATCGTGATGGCGAGATGCCCTCCTTCCAGCTGGTGGGCATGATGCATGGCATCGCCGCTGGCATGAAGTACCTGTCTGACATGAGCTACGTTCACCGGGACCTGGCTGCCCGCAACATCCTGGTCAACAACAACCTGGAGTGTAAGGTGTCTGACTTCGGCCTGTCCCGAGTGCTGGAGGACGACCCTGAGGGCACCTACACCACCAGCGGTGGTAAGATCCCCATCCGCTGGACAGCCCCAGAGGCCATTGCCTACAGAAAATTCACCTCGGCCAGTGACGTGTGGAGCTTCGGCATCGTCATGTGGGAAGTCATGGCCTTTGGCGAGCGCCCCTACTGGGACATGAGCAACTGCGAGGTGATGAAGGCCATCAACGAGGCGTTCAGGCTGCCAGCGCCCATGGACTGCCCATCAGCCGTCTACCAGCTCATGCTGCAGTGCTGGCTGCAGGACCGCTCCAAGAGGCCCCGTTTCCCGGACATCGTCAGCCTGCTGGACAAGCTGCTCAGGAGCCCCGAGTCCTTGAAGGCTATCGCAGACTTCGACCCCCGCGTATCCATCCGCCTGCCCAGCACAAGTGGTTCGGACGGCTTACCCTTCAGGTCGGTGTCAGAGTGGCTGGAGTCCATCAAGATGAGCCAGTACAGTGAGAACTTCACCTGCGCTGGAGTGGTCACCATGGACCAGGTGCTGCAGATGAAGAATGTGGATATCAAGAACATTGGCGTAAGACTGCCCGGCCACCTGAAGAGAATTGCATACAGCATCCTGGGCTTGAAAGACCAGACCAGCACCCTGAGTGTATTTGCAGTGTGACCCAATGCTAGTGGTGCAGGAATTTGAGTtggacagcactctgactgaacTTTGAACTCTGTGTTGGACTGGACTGGAGCGGAGCTGCGGGGACGGCTTTGGACAGACAAACTGAAAACTTCTTAGGGGCATGGTCTAGCCAAAAGAGACTGACAATACTGTGCAATCTTAAAGATTTCTAACAGACTTGTTAAGCgtatctaaaaaataaaaaaaaggaatGGAGTATTTTTACAACAATAGATGTATTGATTAGactgtgtatattatatactgtatatatgttatTATCCATGTCAGTTGTATAGATACAGTTCAATCCCCAATCTTTGTTAATATTTTGTTTGCAtgcttcccctctctcccctgaaaCTAATCAAGTCATAAAAGTCTTGGAATAGCTTGTACCGAGGTTGTCTCTTGTTTCCATAGCAACTAATATTGAGAAGAGAAAATTAAGAAGTCACAAAACCACTTACACCAAAGCAATTATTTGTGTGAAGTGGACTGCTGTGGCCTTTTGGGTATGAGTTTGGCGGTGTTTGTGCCAGTGAAATGCATTGTGGTCCATGTAATCTCTTGCTAAACTAATGAGAATGGACTCGAAGCAGAGAGTGGACCTGAATGGGCCTGGGCAGGACGTATGTTAACATGATGGTGCATTTGTGTATGCCACAGTCTTGAGGTTATTGTCTTAGTCCAGTTTGGGATGTTGTTAGCTGCTGTTGTGCCTTATCTGGGCTTGATTTAGATGTTAAGCTATCATATGAAAATAACGTGAAAAGATATGAGGTACTCCTCATGTTCAGTTTAACTGGCCGCAAACGCTTGTGTTAATTGATTGGGATCAAGAACATCACTTACATTGAAGCACTTAAATAAGTAACAATTGGGATGAGTTGTCTCATCTAAAACATCTATCTATCTtgccattattattatcatcatgcCATAGGAAGATCATTTGAAATAAAATGAGGCAGCTGAAAGAATTTGTTTATATttgggtcgttccacgaaatTAGTTCTTTttcgtccctttgatattttaagtagacatTGTGCACAAATAATAAGCATGTTatatttaatatagaccacatggaaaatACAACAAATCTGATTTTTTTATGTGAATGAATACTTGATCAAGTGCCAAAATGCatcattttgacatgtccctcagTTTATCCTCTTTGACTccctaggaagattttaacccgcTCAACCCCAACATTTGTCCAAATGatcaccatcattgtaagccctagttattttgtggctttgacagtcatttctgaagagtattatttatttaatgttggTGATTGCATtacttttttttccttttttttttaaacacctgTCCCTTAttttatggtcaaccctgttatgtgaaatgaactctcgttttaatatggtgaaactattccatGTTGGAAAAAAATTGTTTCAAAAGAGACATTGAACGTTTAATAGTCAAATCTGAGAAGCAGGTGAGCTAGTTCTACTCATTTGTCCGTTTTGTGTTGGAAAACTGAGTGGGTCGAGTATGATACGTCCACCCTGTTACCCAtggatagacaggctagaaatctTTTAACAATTTCATGGTCTGTGAAATTGCCACTGCTGcacacaagcttccattccctctgtcacaaggggatttatggctgcTTTAAGGTTAagtcgtcaaccctgttactttttGACACTTAATAAGCAGTTAATATAgtcattttttaatttaacctctgagatggggattttttaaaatatatatttataatttgaacatgtgctctttatgacggAATGTTATAATtatgtgaaataaaacatttattttcaccAAGTTACGCTACTCAAAAGGTACCTATTTGGTGGAACGACCCATTTAATGATGGATTTAATTTTGAAAGGTATTGTGTCAAGCTTTATCAAGTCAGGATTACAGGCCTTTTTTCAAAGTGGTTTGAAAATACAAATGCCCAACATGTTTGAATTAAATAGATGATTTAGGATTAGAAATGCTTGTTGTGATGATTTCAGAGAATGTAAAGTGTAGTTTGATATGCAATTTCAATGTGACagtaaaagtatttttttttaaatcacaactTAGATTTACCATTATTTTCTTGTTCTAATTGCTTTATCCTTATTTCTTATTTGGTGTTTAGTAACAAGTGTTTTATGGGATGGAACAATTTGCTTTGAGAATGCAGATAATAATACCATTGTATTATTTTTCCTCTCAATGCATTTCATTGATAAAGTGCTTGCTTCTGGCAATGCCAAGAAAGTATCAGTTTTCTTCAGTCTTAATTGACCAGCTCATCCATATCCAATAGTTtccccagatcagtttgtgctcttgccaacatACCAAACAAtagagttggcaagagcacaaacagatctggtacCAGCCTATATCCAAAAGACTGTGTGCATCATTTATCCCAATGCTCTAAAAAGATGACGGTTTGTTAGTGACTCTCTCTTCACTACTTGACTTTTTGCTTTAACTTTTTTGGATCGTCTTATTTCACATCTTATGCTCCTTGTTTCATTTATGAATATAGAAGTCTATAGTACTTTTTTTTATTAGTTTACTAGATTTTCATTTGGAAAAGGGATTTTCTGGGGGGGAGGGGTTTATTGCCTTTTGTATAATTGAACTTTGTAAGCATATTTTACTGCTTTTTATAGGAAAATTAAAAATTGTATGTTCAATTTAGGTAACTTTCATCAAAGTTACATCACTCTTATTGTTGCTGTCTTACAGACAAATTAACAATTTATTGATTTCAAAAGTAAACTTTGTTTTATACTTTATTTAATAgtctatttattttttacttgtatTTATTGTTCATAATTACACTGAGCTGGGCTTTATTTGAAATTGAAGGTTGTCTTGTCATAAACTATTCGTTGCCCTTCATTCATATTTGATTCCATTCGTTGCCGTTGACCAATGATTGACGCGCCAAAAAACACCACTTACAATAAAGCCTGAAATTTGACTTCC

Function

GO: NA

KEGG:

id description
K05103 EPHA2, ECK; Eph receptor A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1583929 lncRNA downstream 242594 52089251 ~ 52089832 (-) True G1386889
TU1583928 lncRNA downstream 246390 52085821 ~ 52086036 (-) True G1386888
TU1583927 lncRNA downstream 247111 52085109 ~ 52085315 (-) True G1386887
TU1583922 lncRNA downstream 252057 52080137 ~ 52080369 (-) True G1386882
TU1583921 lncRNA downstream 252310 52079916 ~ 52080116 (-) True G1386881
TU1585267 lncRNA upstream 229086 52593568 ~ 52593778 (-) True G1388023
TU1585269 lncRNA upstream 233678 52598160 ~ 52598398 (-) True G1388025
TU1585280 lncRNA upstream 247319 52611801 ~ 52612137 (-) True G1388036
TU1585283 lncRNA upstream 253193 52617675 ~ 52618106 (-) True LOC110491093
TU1585288 lncRNA upstream 276193 52640675 ~ 52640919 (-) True G1388044
XM_021566382.2 mRNA downstream 9889 52311057 ~ 52322537 (-) True fam131c
XM_021566380.2 mRNA downstream 47542 52282839 ~ 52284884 (-) True hspb7
XM_021566379.2 mRNA downstream 50475 52273320 ~ 52281951 (-) True zbtb17
XM_021566378.2 mRNA downstream 59425 52267735 ~ 52273001 (-) True ddost
XM_021566373.2 mRNA downstream 64891 52241598 ~ 52267535 (-) False plekhm2
XM_021566388.2 mRNA upstream 15069 52379551 ~ 52419314 (-) False spen
XM_021566385.2 mRNA upstream 15069 52379551 ~ 52428868 (-) False spen
XM_021566387.2 mRNA upstream 15069 52379551 ~ 52428868 (-) False spen
XM_036947204.1 mRNA upstream 15069 52379551 ~ 52428868 (-) False spen
XM_021566386.2 mRNA upstream 15069 52379551 ~ 52428869 (-) False spen
TU1583828 other downstream 342431 51983134 ~ 51989995 (-) True LOC110492226
TU1582822 other downstream 1203778 51090645 ~ 51128648 (-) True G1385888
TU1582837 other downstream 1217361 51113403 ~ 51115065 (-) True dffb
TU1582569 other downstream 1276365 51055631 ~ 51056061 (-) True G1385645
TU1581769 other downstream 2266609 50064821 ~ 50065817 (-) True G1384875
TU1585179 other upstream 54394 52418876 ~ 52428759 (-) True spen
TU1585247 other upstream 207228 52571710 ~ 52572307 (-) True LOC110492250
TU1585503 other upstream 667450 53031932 ~ 53032921 (-) True G1388236
TU1585952 other upstream 1365855 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 2180246 54544728 ~ 54545243 (-) True G1389763

Expression Profile