RNA id: NM_001246332.1


Basic Information

Item Value
RNA id NM_001246332.1
length 1816
RNA type mRNA
GC content 0.50
exon number 13
gene id foxp3-2
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53165504 ~ 53181656 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGGAGATACAGAGTAAGCCCAGGGATGCCACAGACTGAGAGTGAGAGGTTGAAGAGTGGGCGGCTGAACAGTGgtagacagcagcagcagcgagaTTGGCGGGGTGAACACGGAGAAGAGCCAGGCACACGTACCAAGCCAAATGATTCTGTCTCACCTCGGCTCTATGCTCGTACCTCTGTTACTCAGaTGGGTTTCCCATTGATGATTGGATCTGGAGGTCCACTTATGGCCTCATCTCAGCTCCAGAACATACTGTTACAGCAGTGTTCCAGTGAGGAAGAGGGGAGACCTTTCCTGCAGCGGGTGTTTCGGTGCCCCCAGTTGAGCCAGCACAGACCCTCTGTCCTACGCCAGGCTGTCCTGGCTGCCCACGTACGACCACAGACGGCCGGTTCAGCTCAACCCATATCACCGTGCAAGGTGGAGGTGGACACAGGGAGCCGTGGACAGTCCTCACCCCCACACTCTGAGCACTCTCCTGGGCCCACTCGTCACCCCTCTCCCCTGAGGAGAGCCAATCCTAAGCAGAGCTCCATCATCACCAGGCATAATGAGCCAGGTCACCCAACCCTACGGAGCTCCAGTGCTCTGTTTCTCAACGGACTCTGCTGCTGGCCAGGCTGCGATGCGGTATTTGAAGAATTTCCACGTTTTTTGAAACACCTCCACTCTGACCATGGCCATGGAGACAGAAGCATTGCACAGTGGAGGGTACAACAAGACATGGTGCAATACATGGAGACCCAGcTGACTGTGGAAAAACAGAAACTCTTTGCAATGCAACTCCATCTGCACCTGTCTGAACACAAATCAACTGACATGAAGGCAGGTTCAGATTGGCCCTACAGTCACAACCTGGCACTAGTCCTGCCCCAGTACTCATCCCCGGCCTTGGCAGCAGATGGAGTGCCACGCTGCTCCACTAAAGAGCCAGAGGAGCTGGCACAGCATGAGCAATGGCCCGCTGCCGCTCCCCACCATCTACTCCCAGATCTTGTCCCGAGTGTTGAGTGTTACAAATACAACAACATCCGGCCTCCGTACACCTACGCCTGCCTGATAAGATGGTCTATCCTGGAGTCTCCAGACAAGCAGCGCTCTCTGAATGACATCTACAACTGGTTCACCACAATGTTCTTCTACTTCCGACACAACACGGCCACATGGAAGAACGCTGTCCGTCATAATCTTAGCTTGCACAAGTGTTTTGTGCGAGTGGAGGGAGGCAAGGGGGCTGTCTGGACAGTGGATGAAATGGAATATCAAAGGAGAAAGGGACAAAAATATCACAGGGATCATCATGTGAAATGGTTGGCACCCTTCTCCTTATTCCGTCCAGAAGAACCTTGAACATAGCCATCCCTTCAGTGAATGaaaaactacaggaaaaggaagtcACCAGGACCTATAACTGAATCAGGTATATTATAACAGGGCTGGACCAAAAGCCTCCATATTAGTTCTCCAGGCAGAGGGTTGACCAgtcctggtctacagtatctacagCACCCAGCACCACCTTCTTTATTCAGCAGCAGATGGTGCTATAATACATAGCATAGCCCCGGACTCTTTTGCCTCTCTAGACTGATTATGAAGAAGTGTGCATGGCTGGAATGGCAATATATTCTGCAGCCTTTGAAATAAAAATATACACTTAAAAATGATTTGTCAATAAAACCACAGTGAAAAGGTGAACAATcattttgttttgtagtgttggCTACATATGTGTTACAGCAAGCAAGTACAAATTGGACATTCTGTCAAAAATTCATAAAATAATTAATAAAATTAATATTTGAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1585534 lncRNA downstream 69361 53094545 ~ 53097524 (-) True G1388265
TU1585516 lncRNA downstream 93575 53073102 ~ 53073310 (-) True G1388249
TU1585487 lncRNA downstream 94081 53072571 ~ 53072804 (-) True G1388220
TU1585505 lncRNA downstream 133190 53033482 ~ 53033695 (-) True G1388238
TU1585501 lncRNA downstream 135168 53031430 ~ 53031717 (-) True G1388234
TU1585606 lncRNA upstream 37551 53218454 ~ 53218762 (-) True G1388328
TU1585619 lncRNA upstream 46253 53227156 ~ 53227471 (-) True G1388333
TU1585641 lncRNA upstream 73826 53254729 ~ 53254985 (-) True G1388351
TU1585642 lncRNA upstream 74187 53255090 ~ 53255300 (-) True G1388352
TU1585647 lncRNA upstream 75516 53256419 ~ 53257688 (-) True G1388354
XM_021566454.2 mRNA downstream 20712 53097881 ~ 53146173 (-) False LOC110492274
XM_021566456.2 mRNA downstream 20712 53097882 ~ 53146173 (-) True LOC110492274
XR_005036544.1 mRNA downstream 123410 53037528 ~ 53043475 (-) True LOC110492271
XM_021566451.2 mRNA downstream 123418 53036097 ~ 53043467 (-) False LOC110492271
XM_021566458.2 mRNA upstream 25368 53206271 ~ 53211578 (-) True LOC110492276
XM_021566466.2 mRNA upstream 32429 53213332 ~ 53217730 (-) False LOC110492279
XM_021566467.2 mRNA upstream 32429 53213332 ~ 53217730 (-) False LOC110492279
XM_036947232.1 mRNA upstream 32429 53213332 ~ 53217731 (-) False LOC110492279
XM_036947233.1 mRNA upstream 33038 53213941 ~ 53217735 (-) True LOC110492279
TU1585503 other downstream 133964 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 594578 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 738126 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 1176890 51983134 ~ 51989995 (-) True LOC110492226
TU1582837 other downstream 2051820 51113403 ~ 51115065 (-) True dffb
TU1585952 other upstream 549434 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 1363825 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 1803915 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 2643256 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 2883600 56064503 ~ 56064862 (-) True G1391586

Expression Profile