RNA id: XM_036947232.1


Basic Information

Item Value
RNA id XM_036947232.1
length 2625
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110492279
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53213332 ~ 53217735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taacagggatacatttgtgcacaaaaattgagagaaataagctttttgtgcatatggaacatttctgggatattttatttcagctcatgaaaccaacactttagatgttgcgtttatatttttgttcagtggagTTAATCTTAACCACTCAGAAGGGTATCATGCTATTTACAAGTGTTGTGTACAAAGAAATTTGTATATAATTTGTCTTAATACTTAAGAGTCTGCGTCAATCTAATTAACATAATACAACAATTCCCATCAAAATCCATATCTGTATGGgcttttttgcatgggctgcatctAAATCCGCCGatgtcggccttccgcatctgcggtggaaattggcagagctacagcactgtttgtcagaccagTAGACAttgaaaattggtcttctcacgaaaacgcaGAGCCCGAACGGTTTAGCCGACTAACTAATATGACCACTATATGAAAAGATGAgactcacgaacacgatggtgtaCTCCGTTtttctctacgacccccacaagcccCATGGGACTGGTCTAAAATCATTACCGCCCATGTGCCAACGTCTGTCTGTAGCATCtgaaccgtttgggctacaaactaatataacccacaggaggttggtgaagCCTTCATTGAGGAGagcgggcttgtggtaatggctggagtggaatggtatcaaataaatggtttccaggtgtttgatgccattccatttgctatGTTCCGaccgttattatgagccgttcttccctcagcagcctctgcTGATATGACCCCATATTGGAAAGGGGAGACTTACGAACACGTTGGTATTtctgttttgctctacaacccccacaacAACGACAGGACTCGACTGAAGTTTCACAGCCGTGCTTGTTTAGAGCTCCCTCATAATCGGTTCAGAGACAACACAAGTTGACACATTCCAGAGTGGACTTGGCTCCCCATCTGTCGGCTTACCTTGGTTTAGTCAATCATTAACCACTGCTATCAGGAAAGCATCGTTCAGACGACAGGACGCCATCTCAACACGGAACTGACAAGACACTCGCCAAGTGTCCGTCCTCTGAGAATAGAAAAACAAAGTATCGTCCTTTATTACATCAGTCTTTCTATACGAGGGTTTGTGGTGTTAGTGGGAACTGTGCTCTctgagaggatgaggagaggagttAACTGCAGCTGGTTAGGAGCAGAGATCCCGCTGTCCTGGGAGTTCTTCAGTGTGATCAAGGATGAGCTATGGCTGTTTCTCATTCCTGCTGGGTTCGCTGTGATCATGCTGGCCCTGTTCCTAGAAGAGGTGGGCTTCTTCCTGCGTCACGTGTCCTACTCCAGACGCCGGCACCTCTACCTGTGGATACTGGGCATGTACCCGGTCTTTGGCTTAACCTCAATCATTGCGCTGTACGTTCCTCGCTCCTCCTCACTATGTAGCTTCATAGCTTCTCTGTACCACTCCATTACTTTGCTAAAGTTTATGGGGCTCATCACAGACTTCTTTGGGGGTAAGGCCCGCATGCTGGAGATCTTAGCTGGAGAACAGGTGTCTCCGGATCCGTTcccatgttgctgctgctgttgcctcCCTATGATAGCCATCAACAGGACCAGCCTGGGATGGATGATGGCTGCTGTGCTGCAACTGTCTGTGGTCAGAACCATCCTGTTCTTTGTCACTCTGGTCCTCTGGACAGATGAGCAGTATGACTATGGAGATGCCACCAAAAAGGCCTTGCCTGGCTATGGGCTGAGGGCCAAATTTGTCTGTATCATTGTAGTGTTGGTGCTGTGTGGCCTTCAGAGTGGAATCCTGGAGACCATGGGGGCCCTGGAGGTGGTGCCCTGCACCCCTCCCTTCTCTGTCCTCATGCGTTCCCAGCtaATTTACCACTACTCTGTGATTGTGGAGATGTTCTGCATATGCCTCTTTGCCCGCCACACGTTCCGTAAAGTGGAGCCTAGTCTAGAGGAGGGCTTTGGGCTGGAGGAGAGGCCCCCCAGAGGCATGCTGATGGAGAAGGCGGTTCAGACTGAAGACGTGGTGCCACTCGGGGAGAACCCCTGGCCTTGCTGGGAAGGTGCCGGAGTCTCCAATCCCGACTGTATTAGGGACAGCAGTGAGGACAGCCTTTGTAAAGTCGAACACGCCCCTTTGGATTGCTTCCCTTTCCCTCTTCAACCGAGACGTCAAGAGACGGTGAGGCCAGAAAACGTAACTGATGAAAGTGGCACTTTGGAGTTGCCCAAACTGACTGTCACTGCTGACATCAATGTTGTAGAGTCTAGAAATTTTACTGTTGTATGACAACATGGAATGTACTGTCCTGGAATCTCCTGGTGGGAAGACAACATAGGGGTCACCTCCAGAAAATGGAATAAACACACCATACCGCTTGAGGTACTACCTTAACCAGTTTGTTCCTTTTTGCGTATATTGACTGAGACTCTTGCTCAATGCATTCTATCTATTCCTTAGCTGAATGAAGATGGTAGCTACTGGTGTGATAGGCTGTCATTTTTTCCTACCCAGATTTTTTCTCTACTTTTTATACTCTACATTTTGTTTTGCAATGTTATCTCAAAAAGCCAATAAACTCATTTTTAAAACGCCTATTGCACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1585534 lncRNA downstream 115808 53094545 ~ 53097524 (-) True G1388265
TU1585516 lncRNA downstream 140022 53073102 ~ 53073310 (-) True G1388249
TU1585487 lncRNA downstream 140528 53072571 ~ 53072804 (-) True G1388220
TU1585505 lncRNA downstream 179637 53033482 ~ 53033695 (-) True G1388238
TU1585501 lncRNA downstream 181615 53031430 ~ 53031717 (-) True G1388234
TU1585606 lncRNA upstream 723 53218454 ~ 53218762 (-) True G1388328
TU1585619 lncRNA upstream 9425 53227156 ~ 53227471 (-) True G1388333
TU1585641 lncRNA upstream 36998 53254729 ~ 53254985 (-) True G1388351
TU1585642 lncRNA upstream 37359 53255090 ~ 53255300 (-) True G1388352
TU1585647 lncRNA upstream 38688 53256419 ~ 53257688 (-) True G1388354
XM_021566458.2 mRNA downstream 1754 53206271 ~ 53211578 (-) True LOC110492276
XM_021564410.2 mRNA downstream 31676 53166888 ~ 53181656 (-) True foxp3-2
NM_001246332.1 mRNA downstream 32429 53166885 ~ 53180903 (-) False foxp3-2
XM_021564411.2 mRNA downstream 37246 53165504 ~ 53176086 (-) False foxp3-2
XM_021566456.2 mRNA downstream 67159 53097882 ~ 53146173 (-) True LOC110492274
XM_036947230.1 mRNA upstream 1642 53219373 ~ 53226383 (-) False LOC110492277
XM_036947231.1 mRNA upstream 1642 53219373 ~ 53226384 (-) False LOC110492277
XM_021566462.2 mRNA upstream 1642 53219373 ~ 53226688 (-) False LOC110492277
XM_021566460.2 mRNA upstream 1642 53219373 ~ 53226709 (-) False LOC110492277
XM_021566463.2 mRNA upstream 1642 53219373 ~ 53226709 (-) False LOC110492277
TU1585503 other downstream 180411 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 641025 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 784573 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 1223337 51983134 ~ 51989995 (-) True LOC110492226
TU1582837 other downstream 2098267 51113403 ~ 51115065 (-) True dffb
TU1585952 other upstream 512606 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 1326997 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 1767087 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 2606428 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 2846772 56064503 ~ 56064862 (-) True G1391586

Expression Profile