RNA id: XM_036947242.1


Basic Information

Item Value
RNA id XM_036947242.1
length 5839
RNA type mRNA
GC content 0.58
exon number 12
gene id LOC110492280
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53263801 ~ 53280585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agctaagctcatgcgcAGAAACACGTCTTCAGGTCTAACGGTCCATCGATATAAAGTCATTTTTGACGAAAATTAAAACGTGTCAGTTTGAGGTTGGAATTATAACACAATCagctacttaagacattggctcgaatctaAAGTTGTGCCTTCAGAAATCGAGAAAATTAACCATTTAAGGAAGAATCGTCCACttcccaaaccccagtctggtccgTTGAGTCCACGGAGTGAGTCTTGGGAAGTATCGCGATGTTGGGCCCTCTAGGTTAGAAACTGTGGTAGTAGCTTCAAGACGAGAGGCGCCCCCCGTATgtgtttattagctagctagcgtctTACTAGCCTTTAGGCGCGTTACCGTGCACTAGCGTAGAACAACAATAGTTTATATAGCTAAATGAATTAGCACAACAAGAGGCGTGCCTACCGAGCACCAGACGAGAGAGAGAACTAGCAACTACGTGGTGGGAAGGCTAGCGAAACGGAGAGAAACAgttcagctaacgttagcttgctagttCGGGGTTTCTTGATCCACCGACCGTATTTAGCTTGCTAAAAAGCTAGCTGCTGCTGGAGGCGCAACCGATAACTGCTAGCTACTAGAGGGGAGGAAATGAAGGACAAACAGAAGAGAAAGAAGGAACGCACGTGGGCTGAGGCGGCTCGCATGGTTCTAGAGAACTTCTCTGATGCCCCCATGACGCCCAAGCAGATCCTGCATGTTATTCAGACCAAGGGGCTCAAGGAAATGAGAAGtGGCACAGCCCCTCTGGCCTGTCTGGTGACCATGCTGCATTCCCAGGTGAGGGGGGACAGAGTAAAAAACAGCATCTTCTTTAAGCTTCCTGGCAGGATGAGTCTGTTTACCTTGAAGAAGAACGCTCTGCAGTGGACCAAGAGTTCGAAGGAGGCGGAGACAGCCGAAGCCAGCACACTGGCTACTGCTAACACAGCAACAGCAGGGCCAACGGAAGGTGCGGAGCAAGAGAGCTGTGACTCCATGGAAACAGCTGCAGCCAGTGGAGAGAACGatggtgtgtggttgtgctcacCACATGCTTTCATCAGTGATCATTTGGTGGAGACGTCCATAGATGAGAGCTCGTCCAGTGCATCCTGCTCCACAGAGCCCCAGACCAGGCTGAGTAGATCTGGAGTCTCTGGACAGGTGCGCTCTGAGGCCCAGGCACAGACCCGACTAAGTCGATCCAGACAGTCGAGCAGACAGAGGAAGAAGGCTGTGATGATGCCGCGAGTGGTCCTCACTCCACTCAAGGTCAATGGTGAACACGTCCCGTCAGGGCCCATGAAGAGGAGCCGAGGCGGGGTGGAGGTGGACTTTGAAACGCCCGGCTCTATCCTGGTCAACACCAACATCAGGGCTCTCATCAACATGCGCACCTTCTCTGCCTTCCCAGCCCACTCCCAACAGCAACTCCTGCAGCTCCTCCCTGAGGTTGACCGTCAGGTTGGACCTGATGGTCTGGCTCGCCTCAGTAACTCGGCTCTCAACAATGAATTCTTCACTCACGCCTCCCAGAGCTGGAAGGAAAGGCTTGCTGAGGGGGAGTTCACCCATGAGATGCAGGTGCGATTCCGccaggagatggagaaagagaagaaagtgGAGGCATGGAAGGAGAAGTTCTTTGAGGAGTACCACGGTCAAAAGTCTGGCCTGACCCGAGAAGAGTCTCTGAAGTTGACGATGAGCGAAGCGGCCGATGCTGCCACCAGCGTTCTGGACAGCAAGGTGGCCTTGGTGGCGGCGGGAACGCCCAAGCGCCGCAGTGTGGGCAGGCGGAGGCGTGATGGCAGGATGAGACGGCGAACGCGGGCAGACTTGAGACGCAGGGCGCAACGCACCCTCTGTAAGACCAACTCCCCTACCCTGCAGTCCTCCAAGCAGCTGGAAGGCACGCTCACTTTAGATGCAGCTTCTGTTGCCTCTGTCCCCTTGCCCGTCCCAGAGGCCACCACGgtgcagggaggagaggtggtgttACAGGCCGACTGTGAACTGGAGGACCCGGCCCAGTGTGCCTCCCTAGAGCCCGTGCCCTGCCCTTCCCCTGTGCTCCTGCCTGTGACCATGCCTGTGCCCACCCTGACCCCGACCCCCAGTCCCAGCCCTGTATCTATCACCGCCTCCGATGAGCCTGAAGTCACCGCCCGCCTGCTCCCTGAAGAGCCTGCACCTGCCGTCGCctcaacctcctctccctcctcctcgtcttcctcctcctcctcctcgtcctcctccccttcctcatctccctcctccaactcagagagacagggggggttcACCGCCGGCTTGGATtcttcctcctcgtcctcttcttcctccacggCCGCTGCCACCGCTGATCCACTGGACGACGGGGCCTCCATGGTCACCTCAGTCACGGGGGGCACAACCACCAGCAGCCGGGAGAGCAGCCCTGCAGCCAGCCCCGCCCCCATCATCGCCACCTCCGCCCAGGCTGCCAAGGAGCAGAAGAGGAGGCCAGACGAGCCCCAGGCCTTCTGCAGCTTCCCCGAAAAGAGGCCGCGAATGGAAGATCGTCAGTCCTTTCGTACCACAATCGACGGGGTTCACACGGAAAAGCCGCAGCCGACAGCAGAGGAGCCCAAGGTCCCACCTATCCGGATTCAACTCTCCCGAATCAAACCGCCCTGGGTCAAAGGGCCGCCAACCTACCAGATCTGTCCCCGCATCGTGCCCCCCGGCGAGGGCTCGCGGCGCTCAGGGACGGGGGCGCGCACCCTGGCGGACATCAAAGCCCGTGCCCAGCAGGCCCGGGCCCAGCGCGAGGCCGCTGCTGCTGTTGCAGCCACTGGGGACGGACCAGGGCCGGGCGGGGGCAGGGCTGGTGCTGGGCTACAGGATCGCAGCAGTGGAAGACGAACGCGAGAGCACCCAGGACCCGTCGAGCCCGGAGGagcaggagacgtggaggagcaGGGATCGCCTGCGGGCTCTCATCCGCCTGGAACACAACTACAGCAGTCCAAATTAGAgccctctacccccacccccaacACAGCTGCCTCATCCCCCTCCCTGTCCACCTCTTCCAACCCCTCCCTGTCCTTCTCCGAGCCCCCGCAGACCCCCACTCCATCCCCAACCACCCAGGAGGAGCGACAAGGGGAGCTGAGTGGGGAAGAGgggacaacaccaccaccaatcaAAGGCACCTCCAACGGACTCTCGGACAAGGCAGCGCTGCTGGAGCCTGAGTCGGTGTCCAGCCACCTCCGAGGGCGGGGCGAGGGGGACGACTgtgacaggacaatgaccaaaaatGGTCCCCTGGCGCCCACCTCCATACCAGATTCTCTGCCCAGGTTTGGGGTCCAGGGTGTGGATGTGATCAGGTCCCtggctgggggaggagggggtgtcaTCCAACATGGTTCCCACCACGTGGGGCCACAAGAGAACCCCCCCACCCCAGCAAGAGAGGGCCACAGCCAGAGCGAAAAGCATTCACAGCCctcggagagggggagagatacagcCTCCCTCCCTCGTCTCCCACCTTCAGTCAGAGAGGACGAAGCAGGGCATCACAGCGATTCCACGGAGACGGCCTCCGACTGCGAGAACGAGAGCCAGGAGGAGGAGCCCCACCTGAGCATGTGGAGCCACCGCCTGCCTGCTCAGCGCAACGGCAACATCCAGCACCTCCAAAGGTTGTCTCAACAGGCCCACGGCCAGCCTGTGATCTGCAGCCCCCCTCTACAGCAGATCCAGCAGCCGGTCATCCAGACTCACGTGTCCAACCACCATGGCCACAGCCAAACGGTCATCCAGCCCTGCTTCCCCAACGGCCTGCCCAGCCAGAGTCTCATACAGCCAGGCCAAAAGCAGCCGCAGCCTGAATGCACTCCCCACCCAGACCAACAGACTCTCGCTGCGCCACACTCTCAAACCCAGAGGGGGCACAAAACGGACCCAATGGATGACTACAAAGCGTCCAGCCGGGGCTCGCCTGAGGAGAACTGTAGGCTGGGGCTGAAGCCTTCTCCCATGCACCCCACCGCTGGCTCCAAGAGGCTCCCTAGTTCGGCCCGGCCTGTGTCCACAGTGGAGGCCAACAATCCTCTGGTCACCCAGCTGCTTCAAGGCAGCCTCCCGATGGAGAAAGTCCTGCCGCAGACGCACTCATCCAGCAAGCTAGAGATCAACCGCCTGCCAGGGGGGCCCCAGCCagccccccagtcccagctcaacTGGCAGCAACAGACCAGGTCTCCGGGCCTTCGCTTCAGGGGTCCCACAGAGGCCCATACGGGGGAGTCCCTGGTCCCTGAGTTGTCCTCTCAGAACCAGCAGAAGTCCCCTGTTGGCCGAGGAGGCTCCCCTGGAGCAAGCCGGAGCTTCGGGTCCTCTCCCCTGGGCACAGTGCCCTCCCGCATGGCCTGCCTGCTGGAGGAGGCCTCCTCTCGGGCCACAGCCATGCAGCAGTATCTGTCCCAGCAGCCAGGTGGCTCTGTGCCCCTTGGGGCCGTGCCCGTCATCAcatccctctcttcatcctcttcctccagaCGGAACTCCCAAGAGTCGGCCGTTATCAGAGAGTCTCCAGAGAGGCACCACAACAACATTGCTCAGCCCCGGGCCACCCCCGACCTCTGCCCCTCTGAGGTGGTCCCCACTGTCAAGATAAACTGGCACCCTTCCAAACCCCACCCCCCGCACCAACAGCAGCTCTCGCCTGCACCCAACGTGAAGAGCGAGGTTTCCTCCCGGCCCTCTTGTCAAGCTCTTGTCAAAACCTCCCCCTCTGGCCCCATGGTAGGTGGTGGGCCAGGTGTGGTGGTCACCAAAAAGGAGGCAGTGAACTCTATGGACGATTACCTGACTGGAGGAGGTGGGGCTATGGAGGGACTGCTGAACATGGAGATGTCTTTAGCCCGCATGGCTAAGAAGGAGGCGCAAAGCAAAGCTCAATACTCTTCcacctccccctcttcatcttcatcctcctcttcgatctcctccctccctttccagcTCTACGGTAAGCTGCCCAAGCAGGGCGGGGGCAGCGGTGTGTCGGCCCCCGGTTTCAGCTACACGGCCAACGTGTCTGTGGTAGACGGCAGCGGCTTCTCGAGGAGCATCGCCGATGGTGTCCTACAGCTGCGTCAGCGCCACAGTGCCAGCCAGAGCGCCACGCTCAGCATCCAGGCGTTTGCAGACAGCGCCGCTGAGGAGGTGGCCCTCAAGTGCTCCTGCCGCCTTAAGGCCATGATCATGTGCCAGGGCTGCGGGGCCTTCTGCCACGACGACTGCATCGGCCCCTCCAAACTGTGTGTATCCTGCTTGGTGGTCAGATAGGTGCTTTCGCTGACGTTGCTACAGTGTTGGTGGTTTGGTGTGCCACCTTCAGCATACCTGCTCCATGTATAAACTGTTAACTAACCTAACACACCCAGGACTTGTGAGAGAAACAAGGGTGTGGGACTTAAGGCTTCGACATGTTCCACCCTCGGAAGAGGGTGGAACACAGGCAGGGTGATGCCTTGTATTATACAATCGGTCTGTATTTTTTGTTGCTTATTTTTTCTAATGCCATTAtgattattattttgtattataaTTATTAATGTGAATTTACTTGGCACGGTTGATTTGTAAATTGtgccttttttttttctccaaaaaacATTTACCTCATCTTGACACCTGTCATCAGTTCAGTGTGAAAATGGTGgctgttttgttattgtttttgttttcctcTCTGGGGAATTTGTTCTAGTCTTTCTtgcaaataaatatttttttaaatcattaaaGCAAGCATAAATTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1585647 lncRNA downstream 6113 53256419 ~ 53257688 (-) True G1388354
TU1585642 lncRNA downstream 8501 53255090 ~ 53255300 (-) True G1388352
TU1585641 lncRNA downstream 8816 53254729 ~ 53254985 (-) True G1388351
TU1585619 lncRNA downstream 36330 53227156 ~ 53227471 (-) True G1388333
TU1585606 lncRNA downstream 45039 53218454 ~ 53218762 (-) True G1388328
TU1585674 lncRNA upstream 18745 53299324 ~ 53299977 (-) True G1388375
TU1585676 lncRNA upstream 21424 53302003 ~ 53302208 (-) True G1388377
TU1585677 lncRNA upstream 21849 53302428 ~ 53302760 (-) True G1388378
TU1585680 lncRNA upstream 35246 53315825 ~ 53316414 (-) True G1388381
TU1585692 lncRNA upstream 69117 53349696 ~ 53350276 (-) True G1388393
XM_021566461.2 mRNA downstream 37082 53219373 ~ 53226719 (-) True LOC110492277
XM_021566460.2 mRNA downstream 37092 53219373 ~ 53226709 (-) False LOC110492277
XM_021566463.2 mRNA downstream 37092 53219373 ~ 53226709 (-) False LOC110492277
XM_021566462.2 mRNA downstream 37113 53219373 ~ 53226688 (-) False LOC110492277
XM_036947231.1 mRNA downstream 37417 53219373 ~ 53226384 (-) False LOC110492277
XM_021566473.2 mRNA upstream 9427 53290006 ~ 53297286 (-) True LOC110492284
XM_021566474.2 mRNA upstream 22762 53303341 ~ 53313558 (-) False LOC110492285
XM_021566475.2 mRNA upstream 22762 53303341 ~ 53313558 (-) False LOC110492285
XM_021566476.2 mRNA upstream 22762 53303341 ~ 53313558 (-) False LOC110492285
XM_021566478.2 mRNA upstream 22762 53303341 ~ 53313558 (-) True LOC110492285
TU1585503 other downstream 230880 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 691494 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 835042 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 1273806 51983134 ~ 51989995 (-) True LOC110492226
TU1582837 other downstream 2148736 51113403 ~ 51115065 (-) True dffb
TU1585952 other upstream 449758 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 1264149 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 1704239 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 2543580 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 2783924 56064503 ~ 56064862 (-) True G1391586

Expression Profile